Diffusion SpecMiCP / ReactMiCP (master) History

specmicp/src
masterdc70f931a106d5919076f24…

May 25 2015

correct mesh configuration
d2f6af05b2a9
·fabien on May 25 2015, 21:25.
Use either the number of nodes or dx to build a uniform axisymmetric mesh
1c373d7b9bed
·fabien on May 25 2015, 21:24.
forward declaration of YAML::Node in db conf
36ba3a378a95
·fabien on May 25 2015, 21:23.

May 24 2015

Database configuration
8125b93b7f67
·fabien on May 24 2015, 22:50.
Mesh configuration using YAML language
5c4906ae4e6c
·fabien on May 24 2015, 20:45.
Add helper functions for YAML configurations
add6a4326b0b
·fabien on May 24 2015, 20:40.

May 22 2015

Add UserTermination in DiffusiveUpscalingStagger
a7f264f4cbb4
·fabien on May 22 2015, 15:44.

May 20 2015

Flush output for regular output
4de161c78d57
·fabien on May 20 2015, 19:58.
Correct (?) treatment of fixed components
c082bf825032
·fabien on May 20 2015, 15:03.
Style corrections
009a007fe380
·fabien on May 20 2015, 14:50.

May 18 2015

Remove duplicate line in transport staggerd of saturated system
7499194f1147
·fabien on May 18 2015, 20:13.
Add option to save total concentrations
2a708c0db172
·fabien on May 18 2015, 20:13.
Cmake files again
debf6abf5a42
·fabien on May 18 2015, 17:10.
Add lto flags
a4fe4c3a589a
·fabien on May 18 2015, 00:39.
Add SPECMICP_DLL_PUBLC/SPECMICP_DLL_LOCAL attributes in reactmicp
11a3e9886bfd
·fabien on May 18 2015, 00:33.

May 15 2015

Add mesh configurations
a3aa6bd19bed
·fabien on May 15 2015, 22:24.
Change the function to create a uniform axisymmetric mesh
2ddcee773082
·fabien on May 15 2015, 22:24.
Mesh generation functions
50e9364e5f18
·fabien on May 15 2015, 19:43.
Add configuration functions for DFPM/ReacMiCP
b249ffddc332
·fabien on May 15 2015, 03:08.

May 14 2015

Merge branch 'master' of bitbucket.org:specmicp/specmicp
985a1fc56532
·georget on May 14 2015, 21:07.
Add a class to output var fron SaturatedVariables
c119a9c6a811
·fabien on May 14 2015, 21:05.
Correct installation of utils/io/csv_formatter.io
9ecec8ce67e3
·georget on May 14 2015, 14:56.

May 13 2015

Add base class for output/CSV file
f48b6ea5015e
·fabien on May 13 2015, 23:14.
IO module for ReactMiCP
d00d17fb19ee
·fabien on May 13 2015, 15:43.
Lots of minor fixes
b37bc6fcac85
·fabien on May 13 2015, 15:42.
improve src/physics
5a4fec4bba22
·fabien on May 13 2015, 15:39.
Improve micpsolve/ncp_functions.hpp
9ba099c45a1b
·fabien on May 13 2015, 15:38.
Namespace documentation
ef44ef6723d3
·fabien on May 13 2015, 15:36.
Correct linking for dfpm and reactmicp libs
04a2a87d5f98
·fabien on May 13 2015, 15:10.
Split types.hpp into types.hpp and macros.hpp
3345ac3c833b
·fabien on May 13 2015, 15:08.
Add macro to define default options in dfpmsolver
bd04a52c5ed2
·fabien on May 13 2015, 14:33.
Use macro to define default options for SpecMiCP
8b7823715ed7
·fabien on May 13 2015, 01:02.
Add macros to define the default options of the micpsolver
4e648657a5e9
·fabien on May 13 2015, 00:11.

May 12 2015

Move io modules for reactmicp into the reactmicp module
13e411554225
·fabien on May 12 2015, 21:50.
Move units and laws into specmicp-common
64d7762c1e4e
·fabien on May 12 2015, 21:17.
Move the io/meshes to the dfpm lib, not inline anymore
0707910fa512
·fabien on May 12 2015, 20:16.
Kinetic stagger for ReactMiCP
5c3bb71fa606
·fabien on May 12 2015, 19:38.
Rename the method to save the database in a JSON file
833d04b69fff
·fabien on May 12 2015, 04:18.

May 5 2015

Add a simple DiffusiveUpscalingStagger
121163d3d7a7
·fabien on May 5 2015, 20:01.
I forgot the secondary aqueous species in the solution saver....
bdda0cd099d0
·fabien on May 5 2015, 15:00.

May 4 2015

Add DatabaseWriter module
38536acf95fd
·fabien on May 4 2015, 15:44.
Add missing method in DataContainer
320805e68161
·fabien on May 4 2015, 15:42.
Documentation and minor fixes for specmicp_common
87ddbd8df2da
·fabien on May 4 2015, 15:41.

May 3 2015

The basis in the JSON database does not have to be ordered anymore
e3aed6f39085
·fabien on May 3 2015, 23:34.
Give access to the vector of AdimensionalSystemSolution
e961026e5a94
·fabien on May 3 2015, 22:21.
Add the specmicp_common library
ff0d0fbcfe7b
·fabien on May 3 2015, 22:19.

May 1 2015

Corret symbol export in serializer
7e7e298a6160
·fabien on May 1 2015, 00:15.
Add a serializer for AdimensionalSystemSolution
583eb2cd10a4
·fabien on May 1 2015, 00:09.

Apr 30 2015

Minor fixes/documentation in Specmicp
8dd3dcc176c6
·fabien on Apr 30 2015, 04:03.
Add a fixed molality constraints in AdimensionalSystem
eee5a564c204
·fabien on Apr 30 2015, 00:29.

Apr 29 2015

Database reader : test of charge balance
5f94039643c1
·georget on Apr 29 2015, 22:39.

Apr 28 2015

clean the database API
498ace618930
·fabien on Apr 28 2015, 23:10.
Documentation for src/types.hpp
c50eee2ea943
·fabien on Apr 28 2015, 16:19.
CmakeLists fixes/enhancements
3d80bf60e333
·fabien on Apr 28 2015, 16:19.
Use static libraries for all tests
8208e107ea62
·fabien on Apr 28 2015, 05:21.
Set the visibility flags for the Specmicp library
7df477fd05e4
·fabien on Apr 28 2015, 04:53.
Set the visibility flags for the database library
2553b8ca7134
·fabien on Apr 28 2015, 04:10.
Fixes to compile with Clang (3.6.0)
9c9d231a7dfd
·fabien on Apr 28 2015, 01:27.

Apr 27 2015

Fixes suggested by Cppcheck
da87eb82fc39
·fabien on Apr 27 2015, 22:41.
Add a hash in the database
fbbaf4c5659e
·fabien on Apr 27 2015, 00:16.

Apr 24 2015

Fix/Improve reactmicp return code handling
ce616e309344
·fabien on Apr 24 2015, 16:45.
mark the functions in io::* as inline
4938fa491f61
·fabien on Apr 24 2015, 16:44.

Apr 23 2015

Correct installation commands
c3981c8d675c
·fabien on Apr 23 2015, 22:08.
Fixes minor problems found with the new SANITIZER build type
ecc68045c31e
·fabien on Apr 23 2015, 05:34.
Use small step by default in AdimensionalSystemSolver
9f4ca7e6c456
·fabien on Apr 23 2015, 00:23.
correct const correctness for swap_components()
db18755be7ec
·fabien on Apr 23 2015, 00:22.

Apr 22 2015

Minor fixes in Cmake files
40a28cb7668f
·fabien on Apr 22 2015, 01:49.

Apr 21 2015

correct inclusion of headers
4dde22e2e8fc
·fabien on Apr 21 2015, 21:58.
Proper installation of cython/databases/doc
d05c342d7b8f
·fabien on Apr 21 2015, 17:23.
finally, SpecMiCP/ReactMiCP can be installed
367d9d550e9d
·fabien on Apr 21 2015, 05:24.

Apr 20 2015

Deprecate the total_saturation_{mineral,water}
9cc89d2d9dc1
·fabien on Apr 20 2015, 03:10.
Add a depracation macro
df1297a70e87
·fabien on Apr 20 2015, 03:09.

Apr 19 2015

Update jsoncpp to version 1.6.2
d22a20e5775c
·fabien on Apr 19 2015, 22:01.
Appendix to the database
e16082e00ff6
·fabien on Apr 19 2015, 21:52.

Apr 17 2015

night doc, duck duck
c67f9def418d
·fabien on Apr 17 2015, 04:26.
Evening doc, tired duck
c017dd3a0e61
·fabien on Apr 17 2015, 01:55.

Apr 16 2015

Afternoon doc, happy duck
ca9410fe623d
·fabien on Apr 16 2015, 21:45.
Morning doc welcomes duck
d204ff482220
·fabien on Apr 16 2015, 15:15.
Documentation
d242af75fe48
·fabien on Apr 16 2015, 05:32.

Apr 15 2015

License update before release
b174f1ddf352
·tag: 0.0.3
·fabien on Apr 15 2015, 22:11.
Documentation for the database/species module
94f086f45381
·fabien on Apr 15 2015, 04:29.
The hashing fn does not be to be in every list
9641dcf37708
·fabien on Apr 15 2015, 04:02.

Apr 13 2015

Continue refactoring of Database reader
cfebef7a040e
·fabien on Apr 13 2015, 04:36.
Refactor database reader
14493d59dde5
·fabien on Apr 13 2015, 00:05.

Apr 12 2015

Improve consistency of function naming
d4be19a55956
·fabien on Apr 12 2015, 22:40.

Apr 11 2015

Minor fixes in the c++ SpecMiCP API
a5a9ab80bdf3
·fabien on Apr 11 2015, 22:29.

Apr 10 2015

Add helper function to initialize the solver
9c778f32ba82
·fabien on Apr 10 2015, 05:14.
Solution can return the vector of main solution
698bdbf6176e
·fabien on Apr 10 2015, 03:59.

Apr 8 2015

correct function naming in micpsolver structs
ffb470e98818
·fabien on Apr 8 2015, 22:44.
Add helper meber functions
824f90062e79
·fabien on Apr 8 2015, 15:31.
Add member function to set options in MiCPSolverOptions
0510c2d1f2b1
·fabien on Apr 8 2015, 15:24.

Apr 6 2015

Reader : Move implementation details into the cpp file
4cf2a40df164
·fabien on Apr 6 2015, 15:35.

Apr 2 2015

Fixes strange allocation bug in ReactiveTransportRunner
cdf89e2fd60f
·fabien on Apr 2 2015, 05:25.
Add end user include
56a3baf15614
·fabien on Apr 2 2015, 03:56.
Documentation in src/common.hpp
affc03129ce6
·fabien on Apr 2 2015, 03:40.
Update licence
ed9f62bffad3
·fabien on Apr 2 2015, 02:56.
No diffusion of the electron
d8b65021bdf9
·branch: oxydoreduc
·fabien on Apr 2 2015, 02:34.

Apr 1 2015

Add the ability to solve oxydoreduction system
ea534669b0e6
·fabien on Apr 1 2015, 23:05.
Add the Faraday constants to the list of constants
9a83589563ca
·fabien on Apr 1 2015, 23:03.
Add AqueousSelector and OxydoSelector
cb51196a93d4
·fabien on Apr 1 2015, 23:02.

specmicp/srcmasterdc70f931a106d5919076f24…

May 25 2015

May 24 2015

May 22 2015

May 20 2015

May 18 2015

May 15 2015

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May 13 2015

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May 3 2015

May 1 2015

Apr 30 2015

Apr 29 2015

Apr 28 2015

Apr 27 2015

Apr 24 2015

Apr 23 2015

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Apr 21 2015

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Apr 19 2015

Apr 17 2015

Apr 16 2015

Apr 15 2015

Apr 13 2015

Apr 12 2015

Apr 11 2015

Apr 10 2015

Apr 8 2015

Apr 6 2015

Apr 2 2015

Apr 1 2015

specmicp/src
masterdc70f931a106d5919076f24…