Diffusion SpecMiCP / ReactMiCP (master) History

specmicp/src
mastere6c26c6b28857aab46a2db6…

Apr 28 2017

common: fix cli parser backend
e6c26c6b2885
·georget on Apr 28 2017, 20:15.

Apr 21 2017

specmicp:bin update to match reactmicp-unsaturated
c0da2ae5f913
·georget on Apr 21 2017, 20:18.
database: add ENV reader for db
65d091e2f810
·georget on Apr 21 2017, 20:16.

Apr 20 2017

common:log correct segfault of if no all_io_files
0fc353dd99de
·georget on Apr 20 2017, 17:47.

Apr 18 2017

common: Add io files tracker
6ab3d4f897e0
·georget on Apr 18 2017, 23:01.
reactmicp:runner return _iter filepath
7689995362b8
·georget on Apr 18 2017, 22:49.
minor:reactmicp:unsaturated add useful comment on variables creation
370081051f4e
·georget on Apr 18 2017, 22:44.
Correct data and time parsing for DST
2919173a8b48
·georget on Apr 18 2017, 22:06.

Mar 13 2017

fix:unsaturated read inert_volume_fractio from hdf5 file
8044abc08d5b
·georget on Mar 13 2017, 18:40.

Mar 7 2017

common:io add a file to register all files
ff4beacfbb0d
·georget on Mar 7 2017, 19:45.
common: add read date/item string
c5793433c3d6
·georget on Mar 7 2017, 19:43.

Feb 27 2017

common: add to filesystem api
0f32942e254a
·georget on Feb 27 2017, 17:39.
log: add function to log error and throw runtime_error
d9ee766dbb95
·georget on Feb 27 2017, 17:31.

Feb 21 2017

common: complete HDF5Timesteps API
8e3336821374
·georget on Feb 21 2017, 20:52.
conf:database allow to turn off check_compo in database
91d356fc6d3f
·georget on Feb 21 2017, 20:43.
bin:reactmicp fix gas equation configuration
c0c8d2fa8f10
·georget on Feb 21 2017, 20:33.
bin:reactmicp Use current directory to check for database
aa1e0f666fc1
·georget on Feb 21 2017, 20:20.

Feb 14 2017

fix: update specmicp bin to print path to db is solution
dea414652a6e
·georget on Feb 14 2017, 22:01.

Feb 13 2017

specmicp: fix parsing database
994e96f2d151
·georget on Feb 13 2017, 23:57.
fix:database do not use metadata in database hash
8879040f78fc
·georget on Feb 13 2017, 23:46.
specmicp:io fix read/save solution to yaml file
60df8d7802f5
·georget on Feb 13 2017, 20:49.

Feb 3 2017

specmicp: move AdimSolutionSolver to specmicp::io
c0bc1498b349
·georget on Feb 3 2017, 17:00.

Jan 27 2017

minor: init some values in yaml reader
46885de5dc06
·georget on Jan 27 2017, 22:01.
fix parsing water equation in yaml file
7a9fcae060d9
·georget on Jan 27 2017, 21:57.
minor:specmicp print water equation
81053b2a4950
·georget on Jan 27 2017, 21:51.
fix build to use config yaml lib
9e522bc9887f
·georget on Jan 27 2017, 21:48.
specmicp: fix uninitialized variables
a30360d1e053
·georget on Jan 27 2017, 21:33.

Jan 4 2017

specmicp fix add_<> function in reactant_box
91703167680d
·georget on Jan 4 2017, 13:35.

Jan 3 2017

Fix for build with gcc 4.9.2 (debian 8)
a8288920e6fe
·georget on Jan 3 2017, 14:34.

Nov 23 2016

fix:specmicp correct porosity computation in residual
c3cae15edbf6
·georget on Nov 23 2016, 16:21.
minor:specmicp initialization random generator
42d1352287f2
·georget on Nov 23 2016, 16:18.
fix:specmicp : correct C->K conversion
4e045d7518d2
·georget on Nov 23 2016, 16:16.

Oct 4 2016

minor: add configuration log for no_precipitation
06af08aa99ce
·georget on Oct 4 2016, 19:22.

Sep 30 2016

minor:specmicp add function for cython glue
ee286ee159df
·georget on Sep 30 2016, 21:44.

Sep 21 2016

reactmicp: Add constraint to remove the precipitation of a mineral
37c71514d885
·georget on Sep 21 2016, 19:16.
specmicp: fix no precipitation in adim solver
539807e728a9
·georget on Sep 21 2016, 19:14.
debug: print the current residuals
05066e4d960f
·georget on Sep 21 2016, 19:12.
unsaturated: add residuals in post_residuals_impl
30a1dd687101
·georget on Sep 21 2016, 19:09.
minor: fix dfpm configuration print
395d9580f23b
·georget on Sep 21 2016, 19:04.

Sep 19 2016

specmicp: add mineral upper bound in ReactantBox
166fda7bb141
·georget on Sep 19 2016, 03:39.

Sep 18 2016

micpsolver: clean BoxVI code
f451f96e739a
·georget on Sep 18 2016, 16:17.
specmicp solver : add upper bound on minerals
4837d2ea3d06
·georget on Sep 18 2016, 04:18.
micpsolver : add box constrained VI solver
b33545f17075
·georget on Sep 18 2016, 04:14.

Aug 30 2016

specmicp: add configuration for fixed saturation equation
97deef116070
·georget on Aug 30 2016, 19:34.
specmicp: Add a fixed saturation equation
5821dfca248c
·georget on Aug 30 2016, 17:05.

Aug 3 2016

minor:fix:reactmicp clean whitespaces is iter output
357c78b974d0
·georget on Aug 3 2016, 17:18.

Jul 29 2016

specmicp Vectorise debye-huckel computation
b65fcb5110b5
·georget on Jul 29 2016, 21:53.

Jul 22 2016

fix: add missing compilation headers
e9389b3fb332
·georget on Jul 22 2016, 16:05.

Jul 20 2016

add:dpfm configure/check pivots threshold
949704b848f1
·georget on Jul 20 2016, 17:53.
add:sparse_solver pivots checking in QR solver
41d623add9a4
·georget on Jul 20 2016, 17:30.

Jun 29 2016

add:specmicp functor to set update in StepProblem
2c714e5b1af0
·georget on Jun 29 2016, 17:12.
add:specmicp StepSolver
1933e8b52009
·georget on Jun 29 2016, 15:28.
fix:specmicp Initialization of SmartAdimSolver
dc54b321598d
·georget on Jun 29 2016, 15:26.

Jun 24 2016

specmip initialization of smart solver in conf
ae4f87a36ca0
·georget on Jun 24 2016, 20:50.
impr:reactmicp:unsaturated Transport stagger conf
c6cff64fe196
·georget on Jun 24 2016, 16:47.

Jun 21 2016

fix:reactmicp:unsaturated check residuals_0
af90341cb097
·georget on Jun 21 2016, 17:21.
fix:reactmicp:unsaturated computation of aqueous transport residuals
2de6635023a7
·georget on Jun 21 2016, 17:19.
reactmicp:unsaturated fix firsts residual in transport
a827fdd5b2b3
·georget on Jun 21 2016, 17:11.
add:dfpm A special method to compute the initial residual can be set
1e654b420708
·georget on Jun 21 2016, 17:09.
add:reactmicp:hdf5: the unsaturated reader can return the mesh
ac46e0a5bfda
·georget on Jun 21 2016, 17:07.

Jun 3 2016

add:reactmicp:unsaturated Inert volume fraction
a1d31955868e
·georget on Jun 3 2016, 21:13.
add:reactmicp Transfer clock time
926e75cd0a71
·georget on Jun 3 2016, 20:07.
Add:rectmicp:unsaturated Implicit gas flux
1ba90898b04a
·georget on Jun 3 2016, 19:24.
minor:bin:reactmicp print dfpm conf for gas
5b27dfbd6dec
·georget on Jun 3 2016, 05:13.
Add:dfpm save jacobian if it can't be decomposed
b0ebbfcf56f3
·georget on Jun 3 2016, 05:11.
fix:reactmicp Charge keeper in ReactantBox
e351e2efe52f
·georget on Jun 3 2016, 05:06.

May 27 2016

fix:out more descriptive log messages
821379fc98d7
·georget on May 27 2016, 15:11.
fix:reactmicp: typo in gas equation configuration
ad53bd7bcbfd
·georget on May 27 2016, 15:09.
fix:unsaturated modify precision of jacobian
28297954ab81
·georget on May 27 2016, 15:05.

May 25 2016

fix:specmicp add charge keeper as component
cd2af1e75648
·georget on May 25 2016, 03:36.
fix:reactmicp:unsaturated check before set
4d7034361c24
·georget on May 25 2016, 03:34.
fix:specmicp add move constructor to extractor
afa831028047
·georget on May 25 2016, 03:33.
add:laws: Van Genutchen capillary pressure model
da23927dfb20
·georget on May 25 2016, 03:23.
fix: towards 0 warning with Clang
8e2ae07751c4
·georget on May 25 2016, 03:21.
fix:build: explicit link of database to yaml-cpp
802535447142
·georget on May 25 2016, 03:13.

May 22 2016

fix: compilation free warning !
c1ba3920479b
·georget on May 22 2016, 22:51.
fix:dfpm remove dead code
b51cc4546096
·georget on May 22 2016, 22:25.
specmicp: remove deprecated methods (AdimExtractor)
d9d18912c2b4
·georget on May 22 2016, 22:20.
dfpm: remove deprecated configuration interface
439b4e78d9e7
·georget on May 22 2016, 22:20.
database: remove deprecated functions
16e082acd0d4
·georget on May 22 2016, 21:51.
units: remove old configuration interface
dc7c72b24e3b
·georget on May 22 2016, 21:51.
specmicp: remove old configuration interface
4e6ffc91d0dc
·georget on May 22 2016, 21:50.
specmicp binary use new YAML interface
b1aa7b422b2b
·georget on May 22 2016, 17:57.
fix:specmicp:configuration fix typo in configuration reading !
c5c5cb9eabcf
·georget on May 22 2016, 17:56.
specmicp: update default starting guess
18558bda9f4f
·georget on May 22 2016, 17:44.

May 15 2016

build: allow compilation with c++14
d624753fa276
·georget on May 15 2016, 19:57.
fix:reactmicp Remove unnecessary visibility directives
95882d9768cd
·georget on May 15 2016, 17:42.
impr:database set unknow_class as a database module
84b0a3f89ae4
·georget on May 15 2016, 17:28.

May 14 2016

fix:filesystem find_path : check path first
070e844d79c4
·georget on May 14 2016, 21:36.
add:mesh read/save mesh in hdf5 file
024def84ee79
·georget on May 14 2016, 21:01.
impr:eigen pass const vector& as const Ref<const vector>&
75a9e7c82fe8
·georget on May 14 2016, 20:59.
feat:dfpm:mesh Refactoring of mesh module (same interface)
fb9249c52241
·georget on May 14 2016, 15:18.

May 6 2016

fix:solver fix commit 46ff29c and tests
73b62312473f
·georget on May 6 2016, 21:40.
api:specmicp:solver clean adimensional solver
a07f579e9946
·georget on May 6 2016, 21:19.

May 5 2016

reactant_box: add volume fraction parsing
e9ed76a21257
·georget on May 5 2016, 16:47.
units: add volume fraction as a amount unit
418c24ad2b1f
·georget on May 5 2016, 16:44.

May 3 2016

impr:specmicp allow retrieving solution in unsafe mode
f96bf7686096
·georget on May 3 2016, 22:25.
feat:specmicp:configuration add ReactBox configuration
a49b2019a703
·georget on May 3 2016, 22:24.
fix:specmicp Add move operator for ReactantBox
315d79756ea6
·georget on May 3 2016, 20:42.
minor:database add 'move' operations for DatabaseHolder
9283170dfee0
·georget on May 3 2016, 20:41.

specmicp/srcmastere6c26c6b28857aab46a2db6…

Apr 28 2017

Apr 21 2017

Apr 20 2017

Apr 18 2017

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Mar 7 2017

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Sep 19 2016

Sep 18 2016

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Jun 24 2016

Jun 21 2016

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May 27 2016

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May 3 2016

specmicp/src
mastere6c26c6b28857aab46a2db6…