Diffusion SpecMiCP / ReactMiCP (master) History

specmicp/src/reactmicp
masterb2c071e32a998c01f06ecd5…

Jul 20 2021

Add a new simple reactive transport system
b2c071e32a99
·georget on Jul 20 2021, 16:52.

Mar 18 2021

Fix compilation error, gcc 10
20ed7ad3d222
·branch: dev
·georget on Mar 18 2021, 19:52.

Feb 20 2019

specmicp:solid solution add print/config for solid solutions
58ce56c41f2e
·georget on Feb 20 2019, 08:52.

Nov 29 2018

chloride:minor small fixes
ba5fd2e04664
·georget on Nov 29 2018, 16:28.

Nov 7 2018

build: modernize cmake files
376ef9dbf3c0
·georget on Nov 7 2018, 09:13.

Oct 19 2018

chloride:eqstagger turn off solver non ideality while perturbating solution
d7edfae72c6f
·georget on Oct 19 2018, 09:03.

Sep 28 2018

reactmicp:chloride small improvements - running simmulation
4527ae1e21e8
·georget on Sep 28 2018, 12:14.

Sep 13 2018

reactmicp: chloride Perturbation of adim solution only solves aqueous species
4b72db0089fc
·georget on Sep 13 2018, 18:44.

Sep 11 2018

reactmicp:chloride improve ChlorideHDF5Reader
4ecda11ec9cb
·georget on Sep 11 2018, 13:30.

Sep 10 2018

reactmicp:chloride small fixes all around
7401b2cbe674
·georget on Sep 10 2018, 17:59.
fix:reactmicp initialize timers correctly
4f4f8a3c1bd2
·georget on Sep 10 2018, 17:53.

Aug 24 2018

reactmicp:chloride start working towards exec for chloride system
29ed1db4fb30
·georget on Aug 24 2018, 12:44.
reactmicp:runner move some function of SimulationInfo to cpp file
0b52e3b5e97f
·georget on Aug 24 2018, 12:17.

Aug 15 2018

reactmicp:chloride improve boundary conditions and add configuration
12ee7fce271b
·georget on Aug 15 2018, 16:16.
reactmicp:systems move AdimConstraints into common
773188cd2fbe
·georget on Aug 15 2018, 16:16.
reactmicp:common move configuration for equilibriumOptionsVector to common
5051d957d18f
·georget on Aug 15 2018, 09:23.

Aug 14 2018

reactmicp:chloride add HDF5 reader/saver
68302da2615f
·georget on Aug 14 2018, 18:57.
reactmicp:chloride misc improvement
ccc131052ac4
·georget on Aug 14 2018, 18:57.
reactmicp:unsaturated update to new common reactmicp system
4a73e9b95387
·georget on Aug 14 2018, 18:57.
reactmicp:systems add common to gather boilerplates between systems
c56a7c260189
·georget on Aug 14 2018, 18:57.

Aug 7 2018

reactmicp:chloride constraints is provided by BCs
0363df1a334f
·georget on Aug 7 2018, 14:29.
reactmicp:chloride add init_variables
44a3ef5ab597
·georget on Aug 7 2018, 14:25.
reactmicp:chloride transport stagger now use chem stagger
3e713c77b395
·georget on Aug 7 2018, 08:56.

Jul 3 2018

reactmicp:chloride use openmp in transport stagger
1acce8e96b7d
·georget on Jul 3 2018, 14:58.

Jun 29 2018

reactmicp:minor public classes in libraries
fc5f9eb0803a
·georget on Jun 29 2018, 14:20.

Jun 25 2018

Merge branch 'chloride' of bitbucket.org:specmicp/specmicp into chloride
38c6305ed272
·georget on Jun 25 2018, 18:18.
reactmicp:chloride bit of cleaning in transport program
cc0bc69f6348
·georget on Jun 25 2018, 18:11.

Mar 3 2018

build:minor add option to disable reactmicp system
39bff88c9e9a
·georget on Mar 3 2018, 10:37.

Feb 21 2018

chloride: fixes for chemistry solver in transport program
1ca349fa1a0e
·georget on Feb 21 2018, 14:36.

Feb 14 2018

chloride: perturb adim, current and potential init
628531a71b14
·georget on Feb 14 2018, 12:00.

Feb 13 2018

chloride: good equilibrium obtained for Na/Cl system
03817253affd
·georget on Feb 13 2018, 13:15.

Jan 29 2018

tmp: lot small changes for system transfer
35557e3cfb69
·georget on Jan 29 2018, 20:36.

Dec 22 2017

chloride: more work on the chloride system
848705901e68
·georget on Dec 22 2017, 16:56.

Dec 11 2017

chloride:fix with tests
c900f5ba2d13
·georget on Dec 11 2017, 11:54.
reactmicp:add helper function to transform dfpm return code
8a7c3529bcc0
·georget on Dec 11 2017, 11:52.

Dec 8 2017

continuing chloride system implementation
00f02a85ce08
·georget on Dec 8 2017, 17:24.

Nov 27 2017

reactmicp: add member to ChemistryStaggerBase
5d637ad6be6d
·georget on Nov 27 2017, 11:47.

Nov 20 2017

chloride: first commit for new chloride system
3a45c7fe073a
·georget on Nov 20 2017, 13:14.

Oct 31 2017

build:fix PGO optimization
50d9a67908d3
·georget on Oct 31 2017, 13:18.

Oct 27 2017

Some more comments
921a58bdaf61
·georget on Oct 27 2017, 18:06.

Sep 13 2017

build:fix one more for the road baby
9e31d0b9115e
·georget on Sep 13 2017, 11:40.

Sep 12 2017

build:fix fix hdf5 include dirs
fd1f6982eaf8
·georget on Sep 12 2017, 16:34.
build: fix the fix, std(11)(14) compilation
569af6df0266
·georget on Sep 12 2017, 15:58.
build: Add SpecMiCPConfig.cmake : package file
990fa8a6d5ec
·georget on Sep 12 2017, 13:20.

Sep 11 2017

build: refactor cmake file for cmake config file
9f0bfa6957ca
·georget on Sep 11 2017, 15:59.

Aug 22 2017

doc: More documentation !
4728ae8e7325
·georget on Aug 22 2017, 22:03.

Aug 4 2017

Documentation run
f7c95635bdac
·georget on Aug 4 2017, 18:52.

Apr 18 2017

reactmicp:runner return _iter filepath
7689995362b8
·georget on Apr 18 2017, 22:49.
minor:reactmicp:unsaturated add useful comment on variables creation
370081051f4e
·georget on Apr 18 2017, 22:44.

Mar 13 2017

fix:unsaturated read inert_volume_fractio from hdf5 file
8044abc08d5b
·georget on Mar 13 2017, 18:40.

Oct 4 2016

minor: add configuration log for no_precipitation
06af08aa99ce
·georget on Oct 4 2016, 19:22.

Sep 21 2016

reactmicp: Add constraint to remove the precipitation of a mineral
37c71514d885
·georget on Sep 21 2016, 19:16.
debug: print the current residuals
05066e4d960f
·georget on Sep 21 2016, 19:12.
unsaturated: add residuals in post_residuals_impl
30a1dd687101
·georget on Sep 21 2016, 19:09.

Aug 3 2016

minor:fix:reactmicp clean whitespaces is iter output
357c78b974d0
·georget on Aug 3 2016, 17:18.

Jul 22 2016

fix: add missing compilation headers
e9389b3fb332
·georget on Jul 22 2016, 16:05.

Jun 24 2016

impr:reactmicp:unsaturated Transport stagger conf
c6cff64fe196
·georget on Jun 24 2016, 16:47.

Jun 21 2016

fix:reactmicp:unsaturated check residuals_0
af90341cb097
·georget on Jun 21 2016, 17:21.
fix:reactmicp:unsaturated computation of aqueous transport residuals
2de6635023a7
·georget on Jun 21 2016, 17:19.
reactmicp:unsaturated fix firsts residual in transport
a827fdd5b2b3
·georget on Jun 21 2016, 17:11.
add:reactmicp:hdf5: the unsaturated reader can return the mesh
ac46e0a5bfda
·georget on Jun 21 2016, 17:07.

Jun 3 2016

add:reactmicp:unsaturated Inert volume fraction
a1d31955868e
·georget on Jun 3 2016, 21:13.
add:reactmicp Transfer clock time
926e75cd0a71
·georget on Jun 3 2016, 20:07.
Add:rectmicp:unsaturated Implicit gas flux
1ba90898b04a
·georget on Jun 3 2016, 19:24.

May 27 2016

fix:out more descriptive log messages
821379fc98d7
·georget on May 27 2016, 15:11.
fix:unsaturated modify precision of jacobian
28297954ab81
·georget on May 27 2016, 15:05.

May 25 2016

fix:reactmicp:unsaturated check before set
4d7034361c24
·georget on May 25 2016, 03:34.
fix: towards 0 warning with Clang
8e2ae07751c4
·georget on May 25 2016, 03:21.

May 22 2016

fix: compilation free warning !
c1ba3920479b
·georget on May 22 2016, 22:51.

May 15 2016

fix:reactmicp Remove unnecessary visibility directives
95882d9768cd
·georget on May 15 2016, 17:42.

May 14 2016

add:mesh read/save mesh in hdf5 file
024def84ee79
·georget on May 14 2016, 21:01.

Apr 19 2016

minor:reactmicp:unsaturated cleanup transport stagger
0e6eede28aa4
·georget on Apr 19 2016, 22:31.
impr:dfpm:io print functions are in their own module
213a1c2ddeb9
·georget on Apr 19 2016, 21:18.
fix:reactmicp:unsaturated fix options getters in transport staggers
acc7f102c526
·georget on Apr 19 2016, 18:07.
fix various bugs found with asan/ubsan
d5e810125277
·georget on Apr 19 2016, 03:15.

Apr 9 2016

fix:build fix hdf5 include directories
97dcff9fa40d
·georget on Apr 9 2016, 20:27.

Apr 7 2016

fix:reactmicp:unsaturated:transport_stagger move dfpm solver initialization
8d7445331c34
·georget on Apr 7 2016, 17:56.
impr:reactmicp:solver print debug information if return code is good enough
6e88c9b19244
·georget on Apr 7 2016, 17:49.

Apr 6 2016

impr:reactmicp:unsaturated only compute residual 0 when initialisation is done
080906e9f926
·georget on Apr 6 2016, 22:45.
impr:reactmicp:unsaturated compute equilibrium for each node at the beginning…
5f8a1f17204f
·georget on Apr 6 2016, 19:20.

Apr 1 2016

fix:build install specmicp/reactmicp main headers
d72d8bcb98a4
·georget on Apr 1 2016, 19:00.

Mar 31 2016

impr:reactmicp:unsaturated openmp directives -> change scheduling for solving…
abfc691f2c1d
·georget on Mar 31 2016, 02:35.
impr:reactmicp:unsaturated:io rewrited hdf5 saver/reader using new wrapper
3e0ab284bd47
·georget on Mar 31 2016, 02:35.

Mar 21 2016

upd:reactmicp runner also output the resource usage information
1e56d0882286
·georget on Mar 21 2016, 20:30.

Mar 20 2016

doc:reactmicp:solver
18753ecb08de
·georget on Mar 20 2016, 16:36.

Mar 18 2016

upd:reactmicp:solver hide implementation details of runner
e21028dfd1f9
·georget on Mar 18 2016, 14:44.

Mar 17 2016

fix:reactmicp:solver timer, and timer output
8b85285ada0c
·georget on Mar 17 2016, 15:39.

Mar 16 2016

impr:reactmicp:unsaturated can now use millimoles unit
41fa07d8cfab
·georget on Mar 16 2016, 15:44.

Mar 7 2016

cosmetic:unsaturated
712a7e059d81
·georget on Mar 7 2016, 21:46.
impr:reactmicp move all timestep initialization to transport stagger
81ec8df88413
·georget on Mar 7 2016, 21:43.
impr:unsaturated:chemistry return option vector
06a7c676281b
·georget on Mar 7 2016, 21:38.
impr:reactmicp share chemistry and transport stagger with upscaling stagger
3d97f5b10cac
·georget on Mar 7 2016, 21:32.

Mar 2 2016

impr:reactmicp:solver allow passing the working directory
c5400cbd468d
·georget on Mar 2 2016, 17:07.
fix:unsaturated many small corrections
72260a03c6cc
·georget on Mar 2 2016, 16:01.

Feb 29 2016

fix:reactmicp:unsaturated fix ? some work still needed on merged equations
f7dff2d80197
·georget on Feb 29 2016, 18:44.
impr:reactmicp:unsaturated use smart solver if needed in equilibrium stagger
d4df81a69eac
·georget on Feb 29 2016, 15:32.
impr:reactmicp call to transport stagger to print information
4eccfa347703
·georget on Feb 29 2016, 15:28.

Feb 26 2016

impr:unsaturated add debug information in equilibrium_stagger
c54dc4629ec7
·georget on Feb 26 2016, 17:33.
fix:systems:unsaturated:variables also reset secondary variables
c47f2ae4e1c8
·georget on Feb 26 2016, 16:16.
fix:unsaturated:transport_stagger multiple fixes
c009ebffe161
·georget on Feb 26 2016, 16:06.