Diffusion SpecMiCP / ReactMiCP (reactmicp/unsaturated) History

History
reactmicp/unsaturated2553b8ca71343f840ee75fb…

Apr 28 2015

Set the visibility flags for the database library
2553b8ca7134
·fabien on Apr 28 2015, 04:10.
Fixes to compile with Clang (3.6.0)
9c9d231a7dfd
·fabien on Apr 28 2015, 01:27.

Apr 27 2015

Fixes suggested by Cppcheck
da87eb82fc39
·fabien on Apr 27 2015, 22:41.
Correct syntax in Catch test so it works with Cmake 3.0.2
ff5c82d2c719
·georget on Apr 27 2015, 15:44.
Add a reactmicp example script for qsub
0e9c9eca9e55
·georget on Apr 27 2015, 15:42.
Add an option to disable the cython module
52245b843fdc
·georget on Apr 27 2015, 15:01.
Add a script to automatize the PGO sequence
d6e70603f1c4
·fabien on Apr 27 2015, 02:10.
Add a hash in the database
fbbaf4c5659e
·fabien on Apr 27 2015, 00:16.

Apr 26 2015

Add a function to define a Catch test
16cfdc479a40
·fabien on Apr 26 2015, 20:27.
Improve SanitizerBuild
9dfcde9f2f65
·fabien on Apr 26 2015, 20:26.

Apr 24 2015

Fix/Improve reactmicp return code handling
ce616e309344
·fabien on Apr 24 2015, 16:45.
mark the functions in io::* as inline
4938fa491f61
·fabien on Apr 24 2015, 16:44.

Apr 23 2015

Correct installation commands
c3981c8d675c
·fabien on Apr 23 2015, 22:08.
Minor fixes in test_specmicp_adim
b3bb8393f99b
·fabien on Apr 23 2015, 05:36.
Fixes minor problems found with the new SANITIZER build type
ecc68045c31e
·fabien on Apr 23 2015, 05:34.
Add a new BUILD_TYPE : Sanitizer
92e6db36ac4c
·fabien on Apr 23 2015, 05:32.
Register the tests in CMake
0695a5eebbb7
·fabien on Apr 23 2015, 04:05.
remove obsolete tests
f8f5240d04ac
·fabien on Apr 23 2015, 04:02.
Correct the saturated_react tests
45121f5a38e6
·fabien on Apr 23 2015, 03:37.
Correct FindSpecMiCP.cmake
094ec7a3c031
·fabien on Apr 23 2015, 00:24.
Use small step by default in AdimensionalSystemSolver
9f4ca7e6c456
·fabien on Apr 23 2015, 00:23.
correct const correctness for swap_components()
db18755be7ec
·fabien on Apr 23 2015, 00:22.

Apr 22 2015

Minor fixes in Cmake files
40a28cb7668f
·fabien on Apr 22 2015, 01:49.

Apr 21 2015

correct inclusion of headers
4dde22e2e8fc
·fabien on Apr 21 2015, 21:58.
correct FindSpecMiCP.cmake
2e5c1cff71ae
·fabien on Apr 21 2015, 21:58.
add a FindSpecMiCP cmake module
e8e561d09e79
·fabien on Apr 21 2015, 20:26.
More work on the cmake files
e8dc0eca640b
·fabien on Apr 21 2015, 17:57.
Proper installation of cython/databases/doc
d05c342d7b8f
·fabien on Apr 21 2015, 17:23.
README.md edited online with Bitbucket
671f98532361
·georget on Apr 21 2015, 05:37.
finally, SpecMiCP/ReactMiCP can be installed
367d9d550e9d
·fabien on Apr 21 2015, 05:24.

Apr 20 2015

SpecMiCP_cython handles c++ errors
02e65c604d98
·fabien on Apr 20 2015, 16:57.
Deprecate the total_saturation_{mineral,water}
9cc89d2d9dc1
·fabien on Apr 20 2015, 03:10.
Add a depracation macro
df1297a70e87
·fabien on Apr 20 2015, 03:09.

Apr 19 2015

Update the specmicp.database cython module
4cb4397eda12
·fabien on Apr 19 2015, 23:50.
Update jsoncpp to version 1.6.2
d22a20e5775c
·fabien on Apr 19 2015, 22:01.
Appendix to the database
e16082e00ff6
·fabien on Apr 19 2015, 21:52.
Improve specmicp_cython module
d5f3e4484902
·fabien on Apr 19 2015, 19:33.

Apr 17 2015

Correct the inert volume in the hydration of an oxyde formulation
2092f6d9b914
·fabien on Apr 17 2015, 04:27.
Use a consistent notation for the amorphous species in the cemdata database
196e66f8c73c
·fabien on Apr 17 2015, 04:26.
night doc, duck duck
c67f9def418d
·fabien on Apr 17 2015, 04:26.
Evening doc, tired duck
c017dd3a0e61
·fabien on Apr 17 2015, 01:55.

Apr 16 2015

Afternoon doc, happy duck
ca9410fe623d
·fabien on Apr 16 2015, 21:45.
Morning doc welcomes duck
d204ff482220
·fabien on Apr 16 2015, 15:15.
Documentation
d242af75fe48
·fabien on Apr 16 2015, 05:32.
README.md edited online with Bitbucket
86effa9b0933
·specmicp on Apr 16 2015, 02:08.
Update the README.md
20c3769905df
·fabien on Apr 16 2015, 02:00.

Apr 15 2015

License update before release
b174f1ddf352
·tag: 0.0.3
·fabien on Apr 15 2015, 22:11.
Documentation for the database/species module
94f086f45381
·fabien on Apr 15 2015, 04:29.
The hashing fn does not be to be in every list
9641dcf37708
·fabien on Apr 15 2015, 04:02.

Apr 13 2015

Hydrates a cement with its formulation in oxyde
defd29f146c3
·fabien on Apr 13 2015, 22:49.
Update cemdata database
47bfc4b94709
·fabien on Apr 13 2015, 22:47.
Minor fixes and updates in cython module
fe96a0546924
·fabien on Apr 13 2015, 17:02.
Continue refactoring of Database reader
cfebef7a040e
·fabien on Apr 13 2015, 04:36.
Refactor database reader
14493d59dde5
·fabien on Apr 13 2015, 00:05.

Apr 12 2015

Improve consistency of function naming
d4be19a55956
·fabien on Apr 12 2015, 22:40.
Everything compiles \o/
94fa7a141211
·fabien on Apr 12 2015, 22:24.
Remove test of the old reactmicp solver
630710becb73
·fabien on Apr 12 2015, 22:22.

Apr 11 2015

Add a python module to compute cement hydration
1ac061b7370f
·fabien on Apr 11 2015, 22:36.
Flag Goethite and Hematite as kinetic species
3e6666c597f4
·fabien on Apr 11 2015, 22:30.
Minor fixes in the c++ SpecMiCP API
a5a9ab80bdf3
·fabien on Apr 11 2015, 22:29.

Apr 10 2015

Merge branch 'cython'
c4c7e54e6efa
·fabien on Apr 10 2015, 05:17.
Add access to the logger in the cython module
4b4cc27e3ddb
·branch: cython
·fabien on Apr 10 2015, 05:17.
Add helper function to initialize the solver
9c778f32ba82
·fabien on Apr 10 2015, 05:14.
Minor fixed in the main CMakeLists
72b4f0f12aa9
·fabien on Apr 10 2015, 04:23.
lots of minor fixes and documentation in the cython module
307fe9844151
·fabien on Apr 10 2015, 04:18.
Solution can return the vector of main solution
698bdbf6176e
·fabien on Apr 10 2015, 03:59.

Apr 8 2015

Remove cython module using the old ReducedSystem
901e398cf5eb
·fabien on Apr 8 2015, 23:01.
First executable commit of the cython module
24b3557bdcb5
·fabien on Apr 8 2015, 22:47.
correct function naming in micpsolver structs
ffb470e98818
·fabien on Apr 8 2015, 22:44.
continue the cython implementation
1bcfe70f1489
·fabien on Apr 8 2015, 15:42.
Add helper meber functions
824f90062e79
·fabien on Apr 8 2015, 15:31.
Add member function to set options in MiCPSolverOptions
0510c2d1f2b1
·fabien on Apr 8 2015, 15:24.
Fixes the eigen include
4787af2cb2cb
·fabien on Apr 8 2015, 15:22.

Apr 6 2015

Start updating the cython module for specmicp
037e16710e65
·fabien on Apr 6 2015, 15:41.
Include two cmake modules for cython
e9e13c1a1fe3
·fabien on Apr 6 2015, 15:38.
Reader : Move implementation details into the cpp file
4cf2a40df164
·fabien on Apr 6 2015, 15:35.

Apr 5 2015

New value to choose different porosities in the reactive transport carbonation…
5ba6971de02e
·fabien on Apr 5 2015, 19:43.

Apr 2 2015

Add a reactive transport example including Fe phases
c386cca6975b
·fabien on Apr 2 2015, 18:59.
Add oxyde as kinetic minerals in cemdata database
e40f6e97269a
·fabien on Apr 2 2015, 18:57.
Comment the carbonation examples
688860f644d0
·fabien on Apr 2 2015, 05:26.
Fixes strange allocation bug in ReactiveTransportRunner
cdf89e2fd60f
·fabien on Apr 2 2015, 05:25.
Add end user include
56a3baf15614
·fabien on Apr 2 2015, 03:56.
Update README.md
430491e14d8a
·fabien on Apr 2 2015, 03:41.
Documentation in src/common.hpp
affc03129ce6
·fabien on Apr 2 2015, 03:40.
Correct the name of the minerals
38a054f9e711
·fabien on Apr 2 2015, 03:03.
Update licence
ed9f62bffad3
·fabien on Apr 2 2015, 02:56.
No diffusion of the electron
d8b65021bdf9
·branch: oxydoreduc
·fabien on Apr 2 2015, 02:34.

Apr 1 2015

Add carbonation example for specmicp using Fe bearing phases
7b0f49c530e7
·fabien on Apr 1 2015, 23:09.
Add test for the oxydoreduction
988370a609fc
·fabien on Apr 1 2015, 23:07.
Add a database test that loads the Cemdata database
7e6021fdbf6d
·fabien on Apr 1 2015, 23:06.
Add the ability to solve oxydoreduction system
ea534669b0e6
·fabien on Apr 1 2015, 23:05.
Add the Faraday constants to the list of constants
9a83589563ca
·fabien on Apr 1 2015, 23:03.
Add AqueousSelector and OxydoSelector
cb51196a93d4
·fabien on Apr 1 2015, 23:02.
Add cemdata.js
522d1d188e48
·fabien on Apr 1 2015, 23:00.
Improve the main CMakeLists.txt
690a91cea2b7
·fabien on Apr 1 2015, 22:59.

Mar 31 2015

Refactor residual and jacobian in specmicp
8d287d0302ef
·fabien on Mar 31 2015, 16:00.
Correct include in micpsolver.inl
4438bed8f0a6
·fabien on Mar 31 2015, 15:59.

Mar 27 2015

Small changes in micpsolver
a915d2a00af6
·fabien on Mar 27 2015, 19:02.
fixes commit 0174eeb
665b1c9415f6
·fabien on Mar 27 2015, 16:10.
Optimize the semismooth reformulation
3f78fff02e69
·fabien on Mar 27 2015, 16:04.

Historyreactmicp/unsaturated2553b8ca71343f840ee75fb…

Apr 28 2015

Apr 27 2015

Apr 26 2015

Apr 24 2015

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Apr 22 2015

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Apr 20 2015

Apr 19 2015

Apr 17 2015

Apr 16 2015

Apr 15 2015

Apr 13 2015

Apr 12 2015

Apr 11 2015

Apr 10 2015

Apr 8 2015

Apr 6 2015

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Apr 2 2015

Apr 1 2015

Mar 31 2015

Mar 27 2015

History
reactmicp/unsaturated2553b8ca71343f840ee75fb…