Diffusion SpecMiCP / ReactMiCP (yaml/safe) History

History
yaml/safe3d80bf60e3339757664bb8f…

Apr 28 2015

CmakeLists fixes/enhancements
3d80bf60e333
·fabien on Apr 28 2015, 16:19.
Use static libraries for all tests
8208e107ea62
·fabien on Apr 28 2015, 05:21.
Set the visibility flags for the Specmicp library
7df477fd05e4
·fabien on Apr 28 2015, 04:53.
Set the visibility flags for the database library
2553b8ca7134
·fabien on Apr 28 2015, 04:10.
Fixes to compile with Clang (3.6.0)
9c9d231a7dfd
·fabien on Apr 28 2015, 01:27.

Apr 27 2015

Fixes suggested by Cppcheck
da87eb82fc39
·fabien on Apr 27 2015, 22:41.
Correct syntax in Catch test so it works with Cmake 3.0.2
ff5c82d2c719
·georget on Apr 27 2015, 15:44.
Add a reactmicp example script for qsub
0e9c9eca9e55
·georget on Apr 27 2015, 15:42.
Add an option to disable the cython module
52245b843fdc
·georget on Apr 27 2015, 15:01.
Add a script to automatize the PGO sequence
d6e70603f1c4
·fabien on Apr 27 2015, 02:10.
Add a hash in the database
fbbaf4c5659e
·fabien on Apr 27 2015, 00:16.

Apr 26 2015

Add a function to define a Catch test
16cfdc479a40
·fabien on Apr 26 2015, 20:27.
Improve SanitizerBuild
9dfcde9f2f65
·fabien on Apr 26 2015, 20:26.

Apr 24 2015

Fix/Improve reactmicp return code handling
ce616e309344
·fabien on Apr 24 2015, 16:45.
mark the functions in io::* as inline
4938fa491f61
·fabien on Apr 24 2015, 16:44.

Apr 23 2015

Correct installation commands
c3981c8d675c
·fabien on Apr 23 2015, 22:08.
Minor fixes in test_specmicp_adim
b3bb8393f99b
·fabien on Apr 23 2015, 05:36.
Fixes minor problems found with the new SANITIZER build type
ecc68045c31e
·fabien on Apr 23 2015, 05:34.
Add a new BUILD_TYPE : Sanitizer
92e6db36ac4c
·fabien on Apr 23 2015, 05:32.
Register the tests in CMake
0695a5eebbb7
·fabien on Apr 23 2015, 04:05.
remove obsolete tests
f8f5240d04ac
·fabien on Apr 23 2015, 04:02.
Correct the saturated_react tests
45121f5a38e6
·fabien on Apr 23 2015, 03:37.
Correct FindSpecMiCP.cmake
094ec7a3c031
·fabien on Apr 23 2015, 00:24.
Use small step by default in AdimensionalSystemSolver
9f4ca7e6c456
·fabien on Apr 23 2015, 00:23.
correct const correctness for swap_components()
db18755be7ec
·fabien on Apr 23 2015, 00:22.

Apr 22 2015

Minor fixes in Cmake files
40a28cb7668f
·fabien on Apr 22 2015, 01:49.

Apr 21 2015

correct inclusion of headers
4dde22e2e8fc
·fabien on Apr 21 2015, 21:58.
correct FindSpecMiCP.cmake
2e5c1cff71ae
·fabien on Apr 21 2015, 21:58.
add a FindSpecMiCP cmake module
e8e561d09e79
·fabien on Apr 21 2015, 20:26.
More work on the cmake files
e8dc0eca640b
·fabien on Apr 21 2015, 17:57.
Proper installation of cython/databases/doc
d05c342d7b8f
·fabien on Apr 21 2015, 17:23.
README.md edited online with Bitbucket
671f98532361
·georget on Apr 21 2015, 05:37.
finally, SpecMiCP/ReactMiCP can be installed
367d9d550e9d
·fabien on Apr 21 2015, 05:24.

Apr 20 2015

SpecMiCP_cython handles c++ errors
02e65c604d98
·fabien on Apr 20 2015, 16:57.
Deprecate the total_saturation_{mineral,water}
9cc89d2d9dc1
·fabien on Apr 20 2015, 03:10.
Add a depracation macro
df1297a70e87
·fabien on Apr 20 2015, 03:09.

Apr 19 2015

Update the specmicp.database cython module
4cb4397eda12
·fabien on Apr 19 2015, 23:50.
Update jsoncpp to version 1.6.2
d22a20e5775c
·fabien on Apr 19 2015, 22:01.
Appendix to the database
e16082e00ff6
·fabien on Apr 19 2015, 21:52.
Improve specmicp_cython module
d5f3e4484902
·fabien on Apr 19 2015, 19:33.

Apr 17 2015

Correct the inert volume in the hydration of an oxyde formulation
2092f6d9b914
·fabien on Apr 17 2015, 04:27.
Use a consistent notation for the amorphous species in the cemdata database
196e66f8c73c
·fabien on Apr 17 2015, 04:26.
night doc, duck duck
c67f9def418d
·fabien on Apr 17 2015, 04:26.
Evening doc, tired duck
c017dd3a0e61
·fabien on Apr 17 2015, 01:55.

Apr 16 2015

Afternoon doc, happy duck
ca9410fe623d
·fabien on Apr 16 2015, 21:45.
Morning doc welcomes duck
d204ff482220
·fabien on Apr 16 2015, 15:15.
Documentation
d242af75fe48
·fabien on Apr 16 2015, 05:32.
README.md edited online with Bitbucket
86effa9b0933
·specmicp on Apr 16 2015, 02:08.
Update the README.md
20c3769905df
·fabien on Apr 16 2015, 02:00.

Apr 15 2015

License update before release
b174f1ddf352
·tag: 0.0.3
·fabien on Apr 15 2015, 22:11.
Documentation for the database/species module
94f086f45381
·fabien on Apr 15 2015, 04:29.
The hashing fn does not be to be in every list
9641dcf37708
·fabien on Apr 15 2015, 04:02.

Apr 13 2015

Hydrates a cement with its formulation in oxyde
defd29f146c3
·fabien on Apr 13 2015, 22:49.
Update cemdata database
47bfc4b94709
·fabien on Apr 13 2015, 22:47.
Minor fixes and updates in cython module
fe96a0546924
·fabien on Apr 13 2015, 17:02.
Continue refactoring of Database reader
cfebef7a040e
·fabien on Apr 13 2015, 04:36.
Refactor database reader
14493d59dde5
·fabien on Apr 13 2015, 00:05.

Apr 12 2015

Improve consistency of function naming
d4be19a55956
·fabien on Apr 12 2015, 22:40.
Everything compiles \o/
94fa7a141211
·fabien on Apr 12 2015, 22:24.
Remove test of the old reactmicp solver
630710becb73
·fabien on Apr 12 2015, 22:22.

Apr 11 2015

Add a python module to compute cement hydration
1ac061b7370f
·fabien on Apr 11 2015, 22:36.
Flag Goethite and Hematite as kinetic species
3e6666c597f4
·fabien on Apr 11 2015, 22:30.
Minor fixes in the c++ SpecMiCP API
a5a9ab80bdf3
·fabien on Apr 11 2015, 22:29.

Apr 10 2015

Merge branch 'cython'
c4c7e54e6efa
·fabien on Apr 10 2015, 05:17.
Add access to the logger in the cython module
4b4cc27e3ddb
·branch: cython
·fabien on Apr 10 2015, 05:17.
Add helper function to initialize the solver
9c778f32ba82
·fabien on Apr 10 2015, 05:14.
Minor fixed in the main CMakeLists
72b4f0f12aa9
·fabien on Apr 10 2015, 04:23.
lots of minor fixes and documentation in the cython module
307fe9844151
·fabien on Apr 10 2015, 04:18.
Solution can return the vector of main solution
698bdbf6176e
·fabien on Apr 10 2015, 03:59.

Apr 8 2015

Remove cython module using the old ReducedSystem
901e398cf5eb
·fabien on Apr 8 2015, 23:01.
First executable commit of the cython module
24b3557bdcb5
·fabien on Apr 8 2015, 22:47.
correct function naming in micpsolver structs
ffb470e98818
·fabien on Apr 8 2015, 22:44.
continue the cython implementation
1bcfe70f1489
·fabien on Apr 8 2015, 15:42.
Add helper meber functions
824f90062e79
·fabien on Apr 8 2015, 15:31.
Add member function to set options in MiCPSolverOptions
0510c2d1f2b1
·fabien on Apr 8 2015, 15:24.
Fixes the eigen include
4787af2cb2cb
·fabien on Apr 8 2015, 15:22.

Apr 6 2015

Start updating the cython module for specmicp
037e16710e65
·fabien on Apr 6 2015, 15:41.
Include two cmake modules for cython
e9e13c1a1fe3
·fabien on Apr 6 2015, 15:38.
Reader : Move implementation details into the cpp file
4cf2a40df164
·fabien on Apr 6 2015, 15:35.

Apr 5 2015

New value to choose different porosities in the reactive transport carbonation…
5ba6971de02e
·fabien on Apr 5 2015, 19:43.

Apr 2 2015

Add a reactive transport example including Fe phases
c386cca6975b
·fabien on Apr 2 2015, 18:59.
Add oxyde as kinetic minerals in cemdata database
e40f6e97269a
·fabien on Apr 2 2015, 18:57.
Comment the carbonation examples
688860f644d0
·fabien on Apr 2 2015, 05:26.
Fixes strange allocation bug in ReactiveTransportRunner
cdf89e2fd60f
·fabien on Apr 2 2015, 05:25.
Add end user include
56a3baf15614
·fabien on Apr 2 2015, 03:56.
Update README.md
430491e14d8a
·fabien on Apr 2 2015, 03:41.
Documentation in src/common.hpp
affc03129ce6
·fabien on Apr 2 2015, 03:40.
Correct the name of the minerals
38a054f9e711
·fabien on Apr 2 2015, 03:03.
Update licence
ed9f62bffad3
·fabien on Apr 2 2015, 02:56.
No diffusion of the electron
d8b65021bdf9
·branch: oxydoreduc
·fabien on Apr 2 2015, 02:34.

Apr 1 2015

Add carbonation example for specmicp using Fe bearing phases
7b0f49c530e7
·fabien on Apr 1 2015, 23:09.
Add test for the oxydoreduction
988370a609fc
·fabien on Apr 1 2015, 23:07.
Add a database test that loads the Cemdata database
7e6021fdbf6d
·fabien on Apr 1 2015, 23:06.
Add the ability to solve oxydoreduction system
ea534669b0e6
·fabien on Apr 1 2015, 23:05.
Add the Faraday constants to the list of constants
9a83589563ca
·fabien on Apr 1 2015, 23:03.
Add AqueousSelector and OxydoSelector
cb51196a93d4
·fabien on Apr 1 2015, 23:02.
Add cemdata.js
522d1d188e48
·fabien on Apr 1 2015, 23:00.
Improve the main CMakeLists.txt
690a91cea2b7
·fabien on Apr 1 2015, 22:59.

Mar 31 2015

Refactor residual and jacobian in specmicp
8d287d0302ef
·fabien on Mar 31 2015, 16:00.
Correct include in micpsolver.inl
4438bed8f0a6
·fabien on Mar 31 2015, 15:59.

Historyyaml/safe3d80bf60e3339757664bb8f…

Apr 28 2015

Apr 27 2015

Apr 26 2015

Apr 24 2015

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Apr 22 2015

Apr 21 2015

Apr 20 2015

Apr 19 2015

Apr 17 2015

Apr 16 2015

Apr 15 2015

Apr 13 2015

Apr 12 2015

Apr 11 2015

Apr 10 2015

Apr 8 2015

Apr 6 2015

Apr 5 2015

Apr 2 2015

Apr 1 2015

Mar 31 2015

History
yaml/safe3d80bf60e3339757664bb8f…