Diffusion SpecMiCP / ReactMiCP (yaml/safe) History

safe13e411554225a32ade1a3df…

May 12 2015

Move io modules for reactmicp into the reactmicp module
13e411554225
·fabien on May 12 2015, 21:50.
Kinetic stagger for ReactMiCP
5c3bb71fa606
·fabien on May 12 2015, 19:38.

May 5 2015

Add a simple DiffusiveUpscalingStagger
121163d3d7a7
·fabien on May 5 2015, 20:01.

May 3 2015

Give access to the vector of AdimensionalSystemSolution
e961026e5a94
·fabien on May 3 2015, 22:21.

Apr 28 2015

Use static libraries for all tests
8208e107ea62
·fabien on Apr 28 2015, 05:21.
Fixes to compile with Clang (3.6.0)
9c9d231a7dfd
·fabien on Apr 28 2015, 01:27.

Apr 24 2015

Fix/Improve reactmicp return code handling
ce616e309344
·fabien on Apr 24 2015, 16:45.

Apr 22 2015

Minor fixes in Cmake files
40a28cb7668f
·fabien on Apr 22 2015, 01:49.

Apr 21 2015

correct inclusion of headers
4dde22e2e8fc
·fabien on Apr 21 2015, 21:58.
Proper installation of cython/databases/doc
d05c342d7b8f
·fabien on Apr 21 2015, 17:23.
finally, SpecMiCP/ReactMiCP can be installed
367d9d550e9d
·fabien on Apr 21 2015, 05:24.

Apr 15 2015

License update before release
b174f1ddf352
·tag: 0.0.3
·fabien on Apr 15 2015, 22:11.

Apr 2 2015

Fixes strange allocation bug in ReactiveTransportRunner
cdf89e2fd60f
·fabien on Apr 2 2015, 05:25.
Update licence
ed9f62bffad3
·fabien on Apr 2 2015, 02:56.
No diffusion of the electron
d8b65021bdf9
·branch: oxydoreduc
·fabien on Apr 2 2015, 02:34.

Mar 25 2015

Update ReactMiCP for the new databse module
3240263f41a0
·fabien on Mar 25 2015, 20:22.

Mar 24 2015

Remove all the old code in the reactmicp folder
dfd04be5d63c
·fabien on Mar 24 2015, 19:06.

Mar 19 2015

Improve the OpenMP section
cb15e034fead
·tag: 0.0.2
·fabien on Mar 19 2015, 19:16.

Mar 17 2015

Add a runner class for the reactive transport solver
a1bb082f067b
·fabien on Mar 17 2015, 15:45.
In reactive transpor solver, return a reference to the timer instead of a copy
c9a42d8c3f55
·fabien on Mar 17 2015, 15:44.
Add the member reset_main_variables in reactmicp::solver::VariablesBase
e5adba3b79c0
·fabien on Mar 17 2015, 15:42.
import reactive transport timestepper
08dbc2f3e912
·fabien on Mar 17 2015, 15:38.

Mar 13 2015

Remove the check for Total concentration too small in the reactive transport…
2ab1f72f9891
·fabien on Mar 13 2015, 04:14.
Remove the cut-off for including a component in the total concentration; the…
d16ed536054f
·fabien on Mar 13 2015, 02:55.

Mar 6 2015

add member function is SaturatedVariables to access main variables directly
331aa30110ba
·fabien on Mar 6 2015, 14:42.

Mar 4 2015

Minor enhancements in the Timestepper
f26e0452c13c
·fabien on Mar 4 2015, 19:47.

Mar 2 2015

improve detection of problems in the ReactiveTransportSolver
5acd30632a6a
·fabien on Mar 2 2015, 21:29.

Feb 28 2015

Add more information about time in ReactiveTransportPerformance
abe3dbcbe88d
·fabien on Feb 28 2015, 23:36.
Add a member in SaturatedReact::Variables to reset the main variables
67e8b2d9680e
·fabien on Feb 28 2015, 23:33.

Feb 27 2015

Use the new timer class in the reactive transport solver
39c9426c395d
·fabien on Feb 27 2015, 17:34.

Feb 26 2015

save the ndf in the transport program and set inline
f7c3cd7d6b9b
·fabien on Feb 26 2015, 15:21.
add a timer in the reactive transport solver to obtain more information about…
9417b8aab783
·fabien on Feb 26 2015, 04:06.

Feb 25 2015

obtain chemistry error in reactive transport solver, fixes issue #16
7ea49ff12a15
·fabien on Feb 25 2015, 22:07.
add an adaptative timestepper algorithm
e403516d3274
·fabien on Feb 25 2015, 22:05.

Feb 23 2015

Use the immobile concentration instead of the solid concentration, include the…
602cfb4f2886
·fabien on Feb 23 2015, 20:17.
Add the possibility to use a different constraints for each node
6a53d7d1a970
·fabien on Feb 23 2015, 20:17.
Do not compute speciation for a component if the total concentration is <1e-10
7c8016b56303
·fabien on Feb 23 2015, 20:17.
Solve the advection problem with the upstream scheme
912b33a4f6ec
·fabien on Feb 23 2015, 20:17.
Add the possibility to add slave nodes to the problem in saturated_react. Slave…
3013f5ef096c
·fabien on Feb 23 2015, 20:17.
Prepare the saturated_react system to solve advection problem
8c6fd9361771
·fabien on Feb 23 2015, 20:17.
Initialise the reactive transport solver Preformance struct
a162fe6f75cd
·fabien on Feb 23 2015, 20:17.

Feb 6 2015

remove unused struct from saturated_react
a0d7a916d1a1
·fabien on Feb 6 2015, 20:45.

Jan 20 2015

Correct complaints of valgrind-memcheck abount non-initialized values
c0560e3c1407
·fabien on Jan 20 2015, 22:56.
Update/improve documentation for the reactmicp::solver namespace and its members
ecc0663ea7ef
·fabien on Jan 20 2015, 15:46.

Jan 16 2015

Remove the one step reactive transport system - don't work, don't compile
b9a808db21fb
·branch: fixpoint
·fabien on Jan 16 2015, 16:38.
Do not update variables if EquilibriumSolver has not converged
9fc5d580b72b
·fabien on Jan 16 2015, 16:18.

Jan 14 2015

Improvements/bug correction in the saturated react system
d4ae324ea89d
·fabien on Jan 14 2015, 00:26.

Jan 12 2015

add more test for saturated_react system, correct bugs
0bedb6497e35
·fabien on Jan 12 2015, 22:52.
Minor\ corrections in SaturatedReact systems
1d57790e5b76
·fabien on Jan 12 2015, 20:53.
A return code was missing in ReactiveTransportSolver::solve_one_iteration
55b82d2b1e21
·fabien on Jan 12 2015, 20:52.
Start the work on the new SaturatedDiffusion systems for the new reactive…
3c484d96fa9b
·fabien on Jan 12 2015, 17:05.
Correct typo in reactmicp::solver::StaggerReturnCode
edab8e64cbc6
·fabien on Jan 12 2015, 15:21.

Jan 10 2015

improve reactive transport solver
17ac62383dd7
·fabien on Jan 10 2015, 02:29.

Jan 9 2015

Improve reactive transport solver
6f21451dd340
·fabien on Jan 9 2015, 22:05.
add foundations of the flexible reactive transport solver
a19ce13e1a11
·fabien on Jan 9 2015, 17:45.

Dec 19 2014

update reactmicp/equilibrium_curve to agree with commit 030defd, rename BC to…
1bd7817be013
·fabien on Dec 19 2014, 21:29.

Dec 16 2014

use previous flux in reactive transport - do not work
6dd908c529b8
·fabien on Dec 16 2014, 15:15.

Dec 12 2014

add coupler, extractor for equilibrium
4adc6181a531
·fabien on Dec 12 2014, 19:42.
correct size management of the array in Chemictry equilibrium curve
bde740772827
·fabien on Dec 12 2014, 19:33.
improve transport program of reactive transport
3a5d25312f42
·fabien on Dec 12 2014, 19:25.

Dec 9 2014

start implementation of EquilibriumCurve approad to reactive transport
f96d0f24dfe0
·fabien on Dec 9 2014, 05:15.
correct coupling, update water in speciation solver to keep saturation at 1
44f3acfa1b25
·fabien on Dec 9 2014, 04:59.

Dec 7 2014

add the dfpm module, generic finite volume module, move meshes to dfpm
511a07d7f37c
·fabien on Dec 7 2014, 20:50.

Dec 2 2014

add options for enabling/disabling solution of purely aqueous problem
7cf040dc468d
·fabien on Dec 2 2014, 19:13.

Dec 1 2014

don't compute speciation if there is no more mineral
e2bd2e54f5c5
·fabien on Dec 1 2014, 17:40.

Nov 25 2014

try improving convergence
32ec38c717c2
·fabien on Nov 25 2014, 15:23.

Nov 24 2014

improve convergence for reactive transport
03a6ee9fa3fe
·fabien on Nov 24 2014, 17:36.
Correct unit problem (again) in transport update
3406a6d82549
·fabien on Nov 24 2014, 17:34.

Nov 23 2014

improve algorithm
276009d19c18
·fabien on Nov 23 2014, 22:04.

Nov 22 2014

correct reactive transport solver
bdfe852fa9b2
·georget on Nov 22 2014, 19:32.
Allow for truncated axisymmetric mesh
9d76e2cc297d
·georget on Nov 22 2014, 19:30.

Nov 17 2014

correct naming in uniform mesh 1D
4905ca8043ef
·fabien on Nov 17 2014, 20:58.
improve reactive solver
ab9678d714b1
·fabien on Nov 17 2014, 20:56.

Nov 13 2014

use temporary variables for the computation
75e069a6735b
·fabien on Nov 13 2014, 00:56.
use new Performance Structure/ PErformance handler and Options handler in…
d9b9320c1f9b
·fabien on Nov 13 2014, 00:54.
rename file containing the reactive transport solver options
25b4a7a686ca
·fabien on Nov 13 2014, 00:45.

Nov 11 2014

improve reactmicp
e1f224c238f0
·fabien on Nov 11 2014, 22:04.

Oct 25 2014

add reactive transport neutrality solver, and update transport program and the…
6d08d8744732
·fabien on Oct 25 2014, 22:31.
add transport_parameters_base, to share porosity and have only one variables
745d2292fc54
·fabien on Oct 25 2014, 22:29.
set update check to be at machine epsilon in secondary variables computation
8ce74ad5e3d5
·fabien on Oct 25 2014, 22:24.

Oct 22 2014

update program, coupler tests and examples to use new features of dfpm solver
6c35d421db39
·fabien on Oct 22 2014, 17:41.

Oct 21 2014

lots of small corrections
7009d71a1296
·fabien on Oct 21 2014, 21:38.
modify jacobian computation in electroneutrality program
0e24a03b71fa
·fabien on Oct 21 2014, 21:35.

Oct 20 2014

add electroneutrality transport program
ab2944bc8002
·fabien on Oct 20 2014, 23:03.

Oct 15 2014

start work on a the transport oslver with neutrality
e882181496b7
·fabien on Oct 15 2014, 23:16.

Oct 9 2014

reduce header dependancy
9ac10ec69a99
·fabien on Oct 9 2014, 04:39.
use typedef
69f1f340a8f5
·fabien on Oct 9 2014, 02:43.

Oct 8 2014

add example directory
da3d68efcce0
·fabien on Oct 8 2014, 22:06.
add axissymmetric mesh 1d, one file per mesh, add reactmicp/mesh.hpp
a3fe40ba7210
·fabien on Oct 8 2014, 20:19.
Prepare mesh module for asymmetric mesh
a82ae4d34189
·fabien on Oct 8 2014, 16:57.
add transport options into reactive transport options
dbcf1c3de1b8
·fabien on Oct 8 2014, 16:45.

Oct 6 2014

modify reactmicp and dfpmsolver to use common.hpp
c46a22fd727b
·fabien on Oct 6 2014, 19:19.

Oct 3 2014

remove unecessary files
e5484eae1665
·fabien on Oct 3 2014, 00:36.
improve fixed-point iteration solver
1461da1319e9
·fabien on Oct 3 2014, 00:30.

Oct 1 2014

SIA reactive transport start to work
83e1af765087
·fabien on Oct 1 2014, 19:37.

Sep 28 2014

start working on BCs and ther applications
49aeec52193c
·fabien on Sep 28 2014, 23:38.
update and coupling utils in SIASaturatedVariables
a68894083238
·fabien on Sep 28 2014, 20:16.

Sep 26 2014

dfpmsolver, and saturated_diffusion program can be solved
8342bd67907c
·fabien on Sep 26 2014, 02:27.

Sep 25 2014

start working on SIA solver
b5fde6377526
·fabien on Sep 25 2014, 05:00.
reactive transport - fully implicit ... does not work
f1c39bf54729
·fabien on Sep 25 2014, 01:31.

specmicp/src/reactmicpyaml/safe13e411554225a32ade1a3df…

May 12 2015

May 5 2015

May 3 2015

Apr 28 2015

Apr 24 2015

Apr 22 2015

Apr 21 2015

Apr 15 2015

Apr 2 2015

Mar 25 2015

Mar 24 2015

Mar 19 2015

Mar 17 2015

Mar 13 2015

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Mar 4 2015

Mar 2 2015

Feb 28 2015

Feb 27 2015

Feb 26 2015

Feb 25 2015

Feb 23 2015

Feb 6 2015

Jan 20 2015

Jan 16 2015

Jan 14 2015

Jan 12 2015

Jan 10 2015

Jan 9 2015

Dec 19 2014

Dec 16 2014

Dec 12 2014

Dec 9 2014

Dec 7 2014

Dec 2 2014

Dec 1 2014

Nov 25 2014

Nov 24 2014

Nov 23 2014

Nov 22 2014

Nov 17 2014

Nov 13 2014

Nov 11 2014

Oct 25 2014

Oct 22 2014

Oct 21 2014

Oct 20 2014

Oct 15 2014

Oct 9 2014

Oct 8 2014

Oct 6 2014

Oct 3 2014

Oct 1 2014

Sep 28 2014

Sep 26 2014

Sep 25 2014

specmicp/src/reactmicp
yaml/safe13e411554225a32ade1a3df…