Diffusion scATAC-seq 5a106c74da4f

ChIPPartitioning algorithm implemented and fully working.
5a106c74da4f
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Authored by rgroux on Apr 30 2019, 13:10.

Description

ChIPPartitioning algorithm implemented and fully working.

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Committed

rgroux

Apr 30 2019, 13:10

Pushed

rgroux

Apr 30 2019, 13:22

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rgroux committed R8820:5a106c74da4f: ChIPPartitioning algorithm implemented and fully working. (authored by rgroux).Apr 30 2019, 13:10

Changes (67)

		Path
A		.gitignore
A		CMakeLists.txt
A	(dir)	scripts/
A	(dir)	scripts/bulk_sequencing/
A		scripts/bulk_sequencing/analysis_cluster_ctcf_mnase_k562.R
A		scripts/bulk_sequencing/cluster_ctcf_dnase_k562.sh
A		scripts/bulk_sequencing/cluster_ctcf_mnase_k562.sh
A		scripts/bulk_sequencing/prepare_data.R
A		scripts/bulk_sequencing/run_all.sh
A		scripts/em.R
A		scripts/plot_references.R
A		scripts/run_all.sh
A	(dir)	scripts/simulate_chipseq_data/
A		scripts/simulate_chipseq_data/run_all.sh
A		scripts/simulate_chipseq_data/simulate_data_chipseq.R
A	(dir)	src/
A	(dir)	src/Applications/
A		src/Applications/ApplicationInterface.cpp
A		src/Applications/ApplicationInterface.hpp
A		src/Applications/ChIPPartitioningApplication.cpp
A		src/Applications/ChIPPartitioningApplication.hpp
A		src/Applications/ProbToRefApplication.cpp
A		src/Applications/ProbToRefApplication.hpp
A		src/CMakeLists.txt
A	(dir)	src/Clustering/
A		src/Clustering/ClusteringEngine.cpp
A		src/Clustering/ClusteringEngine.hpp
A		src/Clustering/EMEngine.cpp
A		src/Clustering/EMEngine.hpp
A		src/Clustering/ReferenceComputer.cpp
A		src/Clustering/ReferenceComputer.hpp
A		src/Clustering/typedef.hpp
A		src/Config.hpp
A	(dir)	src/GUI/
A		src/GUI/ConsoleProgressBar.cpp
A		src/GUI/ConsoleProgressBar.hpp
A		src/GUI/Diplayable.cpp
A		src/GUI/Diplayable.hpp
A		src/GUI/Updatable.cpp
A		src/GUI/Updatable.hpp
A	(dir)	src/Matrix/
A		src/Matrix/Matrix.hpp
A		src/Matrix/Matrix2D.hpp
A		src/Matrix/Matrix3D.hpp
A		src/Matrix/Matrix4D.hpp
A	(dir)	src/Matrix_old/
A		src/Matrix_old/Matrix.hpp
A		src/Matrix_old/Matrix2D.hpp
A		src/Matrix_old/Matrix3D.hpp
A		src/Matrix_old/Matrix4D.hpp
A	(dir)	src/Parallel/
A		src/Parallel/ThreadPool.cpp
A		src/Parallel/ThreadPool.hpp
A	(dir)	src/Random/
A		src/Random/Random.cpp
A		src/Random/Random.hpp
A		src/Random/RandomNumberGenerator.cpp
A		src/Random/RandomNumberGenerator.hpp
A	(dir)	src/Statistics/
A		src/Statistics/Statistics.cpp
A		src/Statistics/Statistics.hpp
A	(dir)	src/Unittests/
A		src/Unittests/unittests_matrix.cpp
A	(dir)	src/Utility/
A		src/Utility/Vector_utility.hpp
A		src/main.cpp
A		src/unittests.cpp