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rgroux (Romain Groux)

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Repositories (2)

User Details

User Since
Oct 31 2016, 19:46 (169 w, 1 d)
Availability
Available
Organization
epfl.ch (university)

Recent Activity

Yesterday

rgroux committed R8820:269172e8f4ef: cleaning and documenting src (authored by rgroux).
cleaning and documenting src
Tue, Jan 28, 17:22

Mon, Jan 27

rgroux committed R8820:b40706cbffdf: cleaning and documenting src (authored by rgroux).
cleaning and documenting src
Mon, Jan 27, 17:49
rgroux committed R8820:dc5e1ddfe3d6: cleaning and documenting src (authored by rgroux).
cleaning and documenting src
Mon, Jan 27, 16:29

Mon, Jan 20

rgroux committed R9524:dde9a89267d9: Corrections done in abstract Corrections done in introduction Corrections done… (authored by rgroux).
Corrections done in abstract Corrections done in introduction Corrections done…
Mon, Jan 20, 13:36
rgroux committed R9524:6d834c02dbfc: Version submitted as thesis draft to the jury (authored by rgroux).
Version submitted as thesis draft to the jury
Mon, Jan 20, 13:36

Sun, Jan 19

rgroux committed R9524:38825d70d718: Corrections done in SMilE-seq part Corrections done in PWMScan part (authored by rgroux).
Corrections done in SMilE-seq part Corrections done in PWMScan part
Sun, Jan 19, 15:17

Fri, Jan 17

rgroux committed R9524:9c4e9be36fc2: Corrections done in ENCODE peak part Corrections done in SPar-K part… (authored by rgroux).
Corrections done in ENCODE peak part Corrections done in SPar-K part…
Fri, Jan 17, 17:15

Thu, Jan 16

rgroux committed R9524:cf47b11d2185: Corrections done in intro part Corrections done in discussion part (authored by rgroux).
Corrections done in intro part Corrections done in discussion part
Thu, Jan 16, 17:26

Wed, Jan 15

rgroux committed R9524:283ecd8183ee: Corrections done ATAC-seq part (authored by rgroux).
Corrections done ATAC-seq part
Wed, Jan 15, 15:24
rgroux committed R9524:e921de5c8a7d: corrections in intro done corrections done ATAC-seq part (authored by rgroux).
corrections in intro done corrections done ATAC-seq part
Wed, Jan 15, 15:24
rgroux committed R8820:f6891f750d11: save (authored by rgroux).
save
Wed, Jan 15, 13:13

Mon, Jan 13

rgroux committed R8820:411e7adaffa4: save (authored by rgroux).
save
Mon, Jan 13, 13:07

Fri, Jan 10

rgroux committed R9524:6f764a966c32: Typos corrected in dedications (authored by rgroux).
Typos corrected in dedications
Fri, Jan 10, 13:25
rgroux committed R9524:d5168af0104b: Abstract translated in FR (authored by rgroux).
Abstract translated in FR
Fri, Jan 10, 13:12
rgroux committed R9524:3e26dc467ef9: Abstract done in EN (authored by rgroux).
Abstract done in EN
Fri, Jan 10, 11:33

Thu, Jan 9

rgroux committed R9524:86dc2b9eeb8a: corrections done in ATAC-seq part correction in appendix work done on head (authored by rgroux).
corrections done in ATAC-seq part correction in appendix work done on head
Thu, Jan 9, 23:50

Tue, Jan 7

rgroux committed R9524:ea68a8190825: corrections done in ATAC-seq part refactor of appendix (authored by rgroux).
corrections done in ATAC-seq part refactor of appendix
Tue, Jan 7, 17:23
rgroux committed R9524:9007eac05170: Corrections done in lab project part Corrections done in intro (authored by rgroux).
Corrections done in lab project part Corrections done in intro
Tue, Jan 7, 10:48

Mon, Jan 6

rgroux committed R9524:80e03fdd9e54: Corrections done in intro part (authored by rgroux).
Corrections done in intro part
Mon, Jan 6, 18:17

Dec 27 2019

rgroux committed R9524:9519abe183ae: Corrections done in SMiLe-seq part (authored by rgroux).
Corrections done in SMiLe-seq part
Dec 27 2019, 16:29

Dec 20 2019

rgroux committed R9524:dd66c66a0851: Typos corrected in intro (authored by rgroux).
Typos corrected in intro
Dec 20 2019, 11:12

Dec 19 2019

rgroux committed R9524:7827cbf1fbf6: Intro refactoring done (authored by rgroux).
Intro refactoring done
Dec 19 2019, 16:15

Dec 18 2019

rgroux committed R9524:5ca972dceaf0: Started refactoring intro (authored by rgroux).
Started refactoring intro
Dec 18 2019, 17:56

Dec 17 2019

rgroux committed R9524:aa0cd4f771be: Correction in ENCODE peak part Part about pattern discovery added in intro (authored by rgroux).
Correction in ENCODE peak part Part about pattern discovery added in intro
Dec 17 2019, 18:02
rgroux committed R9524:334acf4caef0: SPar-K chapter done (authored by rgroux).
SPar-K chapter done
Dec 17 2019, 10:01

Dec 16 2019

rgroux committed R9524:a44695a93f29: SPar-K part put into standalone chapter Working on it (authored by rgroux).
SPar-K part put into standalone chapter Working on it
Dec 16 2019, 18:07

Dec 13 2019

rgroux committed R9524:8dbd2ca661fe: PWMScan part put into standalone chapter PWMScan chapter done (authored by rgroux).
PWMScan part put into standalone chapter PWMScan chapter done
Dec 13 2019, 16:43

Dec 12 2019

rgroux committed R9524:a2f20fc9b99c: Started correction 1st draft (authored by rgroux).
Started correction 1st draft
Dec 12 2019, 17:12
rgroux committed R9524:533467f64550: Discussion done (authored by rgroux).
Discussion done
Dec 12 2019, 12:41

Dec 11 2019

rgroux committed R9524:5af42eb4195e: Discussion added to ENCODE peaks part Work done on general discussion (authored by rgroux).
Discussion added to ENCODE peaks part Work done on general discussion
Dec 11 2019, 18:45

Dec 10 2019

rgroux committed R9524:41d561f1ebd5: Worked on details in intro (authored by rgroux).
Worked on details in intro
Dec 10 2019, 14:20

Dec 9 2019

rgroux committed R9524:db6c486f7de7: Intro done (authored by rgroux).
Intro done
Dec 9 2019, 17:08
rgroux committed R9524:d3e7bdb4da91: Work done on intro chapter (TF part) (authored by rgroux).
Work done on intro chapter (TF part)
Dec 9 2019, 13:24

Dec 5 2019

rgroux committed R9524:7fcd1c40b829: Work done on intro chapter (TF part) (authored by rgroux).
Work done on intro chapter (TF part)
Dec 5 2019, 18:20

Dec 4 2019

rgroux committed R9524:ddce3f6a7b3f: Work done on intro chapter (TF part) (authored by rgroux).
Work done on intro chapter (TF part)
Dec 4 2019, 17:57

Dec 3 2019

rgroux committed R9524:4a87af0ea346: Work done on intro chapter (chromatine part) (authored by rgroux).
Work done on intro chapter (chromatine part)
Dec 3 2019, 19:02

Dec 2 2019

rgroux committed R9524:fd2060e7130a: Work done on intro chapter (chromatine part) (authored by rgroux).
Work done on intro chapter (chromatine part)
Dec 2 2019, 17:14

Nov 29 2019

rgroux committed R9524:1f6911181312: Work done on intro chapter (chromatine part) (authored by rgroux).
Work done on intro chapter (chromatine part)
Nov 29 2019, 17:42

Nov 27 2019

rgroux committed R9524:b87b4ae80387: Work done on intro chapter (chromatine part) (authored by rgroux).
Work done on intro chapter (chromatine part)
Nov 27 2019, 18:05

Nov 26 2019

rgroux committed R9524:abb312226ae9: Work done on intro chapter (chromatine part) (authored by rgroux).
Work done on intro chapter (chromatine part)
Nov 26 2019, 18:53

Nov 25 2019

rgroux committed R9524:272850fe8e1b: Work done on intro chapter (chromatine part) (authored by rgroux).
Work done on intro chapter (chromatine part)
Nov 25 2019, 18:35

Nov 22 2019

rgroux committed R9524:06231b988884: Working on intro chapter (authored by rgroux).
Working on intro chapter
Nov 22 2019, 19:00

Nov 21 2019

rgroux committed R9524:9dac0d43264d: modif of a figure label ATAC-seq chapter (authored by rgroux).
modif of a figure label ATAC-seq chapter
Nov 21 2019, 13:26

Nov 20 2019

rgroux committed R9524:b808f6c81281: ATAC-seq chapter complete (authored by rgroux).
ATAC-seq chapter complete
Nov 20 2019, 14:22

Nov 19 2019

rgroux committed R9524:afb7d7dbbdd1: Working on ATAC-seq chapter (authored by rgroux).
Working on ATAC-seq chapter
Nov 19 2019, 18:38
rgroux committed R9524:bdbf816ffe43: Working on ATAC-seq chapter (authored by rgroux).
Working on ATAC-seq chapter
Nov 19 2019, 15:25

Nov 18 2019

rgroux committed R9524:0b7fa930217c: Working on ATAC-seq chapter (authored by rgroux).
Working on ATAC-seq chapter
Nov 18 2019, 19:09

Nov 15 2019

rgroux committed R9524:bca5cb2e33d7: Work on ENCODE peaks chapter done Working on ATAC-seq chapter (authored by rgroux).
Work on ENCODE peaks chapter done Working on ATAC-seq chapter
Nov 15 2019, 18:29

Nov 14 2019

rgroux committed R9524:945b91f33e27: Work done on ENCODE peaks EBF1 part complete (authored by rgroux).
Work done on ENCODE peaks EBF1 part complete
Nov 14 2019, 18:28

Nov 8 2019

rgroux committed R9524:da4a342448ba: Work done on ENCODE peaks (authored by rgroux).
Work done on ENCODE peaks
Nov 8 2019, 17:18

Nov 7 2019

rgroux committed R9524:14c9dd055f48: Work done on ENCODE peaks (authored by rgroux).
Work done on ENCODE peaks
Nov 7 2019, 17:12

Nov 6 2019

rgroux committed R9524:9c2f00eb23b9: Work done on ENCODE peaks (authored by rgroux).
Work done on ENCODE peaks
Nov 6 2019, 17:32

Nov 5 2019

rgroux committed R9524:194b5435ab94: Work done on ENCODE peaks (authored by rgroux).
Work done on ENCODE peaks
Nov 5 2019, 17:44

Nov 4 2019

rgroux committed R9524:3ba67018b386: Work done on ENCODE peaks (authored by rgroux).
Work done on ENCODE peaks
Nov 4 2019, 17:14

Oct 30 2019

rgroux committed R9524:546af7625ae0: Working on encode peak chapter Added section and figures on NDR (authored by rgroux).
Working on encode peak chapter Added section and figures on NDR
Oct 30 2019, 17:32
rgroux committed R9524:8f197d5a8bcc: Working on encode peak chapter Added section and figures on NDR (authored by rgroux).
Working on encode peak chapter Added section and figures on NDR
Oct 30 2019, 17:21

Oct 28 2019

rgroux committed R9524:118813769059: Working on encode peaks chapter (authored by rgroux).
Working on encode peaks chapter
Oct 28 2019, 18:07

Oct 25 2019

rgroux committed R9524:e98ebe709f44: Working on encode peaks chapter (authored by rgroux).
Working on encode peaks chapter
Oct 25 2019, 17:52

Oct 24 2019

rgroux committed R9524:1fe5865d2dfc: Work on published projects done Started chapter on ENCODE peaks (authored by rgroux).
Work on published projects done Started chapter on ENCODE peaks
Oct 24 2019, 19:00
rgroux committed R9524:6e75d53dd23a: save (authored by rgroux).
save
Oct 24 2019, 07:40

Oct 22 2019

rgroux committed R9524:10ef4f759347: MGA chapter done Working on EPD chapter (authored by rgroux).
MGA chapter done Working on EPD chapter
Oct 22 2019, 18:33

Oct 21 2019

rgroux committed R9524:ef1db7ca3a32: Work on Software part Its name changes to be about laboratory projects Speak… (authored by rgroux).
Work on Software part Its name changes to be about laboratory projects Speak…
Oct 21 2019, 18:08

Oct 17 2019

rgroux committed R9524:5085e29d8fd1: Published softwares and SMiLE-seq chapters proof read (authored by rgroux).
Published softwares and SMiLE-seq chapters proof read
Oct 17 2019, 15:13
rgroux committed R9524:9f1248a4f530: Using EPFL template Writting PWMScan part (authored by rgroux).
Using EPFL template Writting PWMScan part
Oct 17 2019, 15:13
rgroux committed R9524:2cb4179d12c2: save (authored by rgroux).
save
Oct 17 2019, 15:13
rgroux committed R9524:ff47ff07eb94: Work done on software chapter SMiLE-seq chapter ATAC-seq chapter (authored by rgroux).
Work done on software chapter SMiLE-seq chapter ATAC-seq chapter
Oct 17 2019, 15:13
rgroux committed R9524:31f6f831e89b: save (authored by rgroux).
save
Oct 17 2019, 15:13

Sep 27 2019

rgroux committed R8820:f2b641ecc1c6: Added necessary code for EMSequenceApplication and… (authored by rgroux).
Added necessary code for EMSequenceApplication and…
Sep 27 2019, 09:16
rgroux committed R8820:b3279a0472da: Added code to compute kmer enrichment (authored by rgroux).
Added code to compute kmer enrichment
Sep 27 2019, 09:16

Sep 19 2019

rgroux committed R8820:cb31ac5cd561: Bug in EMSequence apparently corrected. Now there is only a check for small… (authored by rgroux).
Bug in EMSequence apparently corrected. Now there is only a check for small…
Sep 19 2019, 18:26
rgroux committed R8820:27fbded05120: save There is a bug in EMSequence Save before starting to dissect the code (authored by rgroux).
save There is a bug in EMSequence Save before starting to dissect the code
Sep 19 2019, 08:40

Sep 5 2019

rgroux committed R8820:b2cb3d77d7e8: save (authored by rgroux).
save
Sep 5 2019, 17:58

Sep 2 2019

rgroux committed R8820:9307741499a8: save (authored by rgroux).
save
Sep 2 2019, 09:11

Aug 29 2019

rgroux committed R8820:782b030be48e: save (authored by rgroux).
save
Aug 29 2019, 10:33

Aug 23 2019

rgroux committed R8820:ee90f0419b6f: save (authored by rgroux).
save
Aug 23 2019, 15:37
rgroux committed R8820:7b3b7bc40180: save (authored by rgroux).
save
Aug 23 2019, 10:28

Aug 20 2019

rgroux committed R8820:1f2a156d69fc: Move constructors and assignment operators added to Matrix, DataLayer, EM and… (authored by rgroux).
Move constructors and assignment operators added to Matrix, DataLayer, EM and…
Aug 20 2019, 10:14

Aug 19 2019

rgroux committed R8820:1bfc0a93ba65: Major update: EM for sequence now support background class Important code… (authored by rgroux).
Major update: EM for sequence now support background class Important code…
Aug 19 2019, 14:53

Jul 25 2019

rgroux committed R8820:c65a488e1038: Sequence layer fully supported Sequence matrices construction and EM motif… (authored by rgroux).
Sequence layer fully supported Sequence matrices construction and EM motif…
Jul 25 2019, 17:54

Jul 12 2019

rgroux committed R8820:f158c081ec79: Support for sequence layer under dev (authored by rgroux).
Support for sequence layer under dev
Jul 12 2019, 16:51

Jul 11 2019

rgroux committed R8820:d777fdf7e152: save (authored by rgroux).
save
Jul 11 2019, 11:10
rgroux committed R8820:fcead3d81371: Work in progress to have a multi-layer EM classification (authored by rgroux).
Work in progress to have a multi-layer EM classification
Jul 11 2019, 10:47

Jul 3 2019

rgroux committed R8820:faf6f1d50a68: 1)ATAC-seq data subsets created for open chromatin and nucleosomes. 2)Code to… (authored by rgroux).
1)ATAC-seq data subsets created for open chromatin and nucleosomes. 2)Code to…
Jul 3 2019, 16:27

May 3 2019

rgroux committed R8820:5ff7043d02d8: AIC computation added to ChIPPartitioning impl (authored by rgroux).
AIC computation added to ChIPPartitioning impl
May 3 2019, 15:31

Apr 30 2019

rgroux committed R8820:5a106c74da4f: ChIPPartitioning algorithm implemented and fully working. (authored by rgroux).
ChIPPartitioning algorithm implemented and fully working.
Apr 30 2019, 13:23