Bug in EMSequence apparently corrected. Now there is only a check for small…
cb31ac5cd561
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Authored by rgroux on Sep 19 2019, 18:20.

Description

Bug in EMSequence apparently corrected. Now there is only a check for small values at the end of the loglikilhood and posterior probabilities computations (EM) and uring model updates (Layers). For consistancy in the compuations, all Layer classes and EM classes have been corrected using a consistant pattern.

Details

Committed

rgroux

Sep 19 2019, 18:20

Pushed

rgroux

Sep 19 2019, 18:25

Parents

R8820:27fbded05120: save There is a bug in EMSequence Save before starting to dissect the code

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[cURL/7] (http://10.0.1.35:80/api/diffusion.mergedcommitsquery) <CURLE_COULDNT_CONNECT> The cURL library raised an error while making a request. You may be able to find more information about this error (error code: 7) on the cURL site: http://curl.haxx.se/libcurl/c/libcurl-errors.html#CURLECOULDNTCONNECT[cURL/7] (http://10.0.1.35:80/api/diffusion.refsquery) <CURLE_COULDNT_CONNECT> The cURL library raised an error while making a request. You may be able to find more information about this error (error code: 7) on the cURL site: http://curl.haxx.se/libcurl/c/libcurl-errors.html#CURLECOULDNTCONNECT

Event Timeline

rgroux committed R8820:cb31ac5cd561: Bug in EMSequence apparently corrected. Now there is only a check for small… (authored by rgroux).Sep 19 2019, 18:20

Changes (29)

				Path
	M			scripts/10xgenomics_PBMC_5k_motifs_classification_1/classification_ctcf_motif.sh
	M			scripts/10xgenomics_PBMC_5k_motifs_classification_1/classification_ebf1_motif.sh
	M			scripts/10xgenomics_PBMC_5k_motifs_classification_1/classification_myc_motif.sh
	M			scripts/10xgenomics_PBMC_5k_motifs_classification_1/classification_sp1_motif.R
	M			scripts/10xgenomics_PBMC_5k_motifs_classification_1/classification_sp1_motif.sh
	M			scripts/10xgenomics_PBMC_5k_motifs_classification_2/classification_ctcf_motif.sh
	M			scripts/10xgenomics_PBMC_5k_motifs_classification_2/classification_ebf1_motif.sh
	M			scripts/10xgenomics_PBMC_5k_motifs_classification_2/classification_myc_motif.sh
	M			scripts/10xgenomics_PBMC_5k_motifs_classification_2/classification_sp1_motif.sh
	M			scripts/10xgenomics_PBMC_5k_motifs_classification_3/classification_ctcf_motif.sh
	M			scripts/10xgenomics_PBMC_5k_motifs_classification_3/classification_sp1_motif.sh
	M			scripts/10xgenomics_PBMC_5k_motifs_classification_4/classification_ctcf_motif.sh
	M			scripts/10xgenomics_PBMC_5k_motifs_classification_4/classification_sp1_motif.sh
	M			src/Clustering/ConsensusSequenceLayer.cpp
	M			src/Clustering/ConsensusSequenceLayer.hpp
	M			src/Clustering/DataLayer.cpp
	M			src/Clustering/EMConsensusSequence.cpp
	M			src/Clustering/EMConsensusSequence.hpp
	M			src/Clustering/EMJoint.cpp
	M			src/Clustering/EMJoint.hpp
	M			src/Clustering/EMRead.cpp
	M			src/Clustering/EMRead.hpp
	M			src/Clustering/EMSequence.cpp
	M			src/Clustering/EMSequence.hpp
	M			src/Clustering/ReadLayer.cpp
	M			src/Clustering/ReadLayer.hpp
	M			src/Clustering/SequenceLayer.cpp
	M			src/Clustering/SequenceLayer.hpp
	M			src/main_test.cpp

Bug in EMSequence apparently corrected. Now there is only a check for small…cb31ac5cd561Actions

Description

Details

Event Timeline

Changes (29)

R8820:cb31ac5cd561

scripts/10xgenomics_PBMC_5k_motifs_classification_1/classification_ctcf_motif.sh

scripts/10xgenomics_PBMC_5k_motifs_classification_1/classification_ebf1_motif.sh

scripts/10xgenomics_PBMC_5k_motifs_classification_1/classification_myc_motif.sh

scripts/10xgenomics_PBMC_5k_motifs_classification_1/classification_sp1_motif.R

scripts/10xgenomics_PBMC_5k_motifs_classification_1/classification_sp1_motif.sh

scripts/10xgenomics_PBMC_5k_motifs_classification_2/classification_ctcf_motif.sh

scripts/10xgenomics_PBMC_5k_motifs_classification_2/classification_ebf1_motif.sh

scripts/10xgenomics_PBMC_5k_motifs_classification_2/classification_myc_motif.sh

scripts/10xgenomics_PBMC_5k_motifs_classification_2/classification_sp1_motif.sh

scripts/10xgenomics_PBMC_5k_motifs_classification_3/classification_ctcf_motif.sh

scripts/10xgenomics_PBMC_5k_motifs_classification_3/classification_sp1_motif.sh

scripts/10xgenomics_PBMC_5k_motifs_classification_4/classification_ctcf_motif.sh

scripts/10xgenomics_PBMC_5k_motifs_classification_4/classification_sp1_motif.sh

src/Clustering/ConsensusSequenceLayer.cpp

src/Clustering/ConsensusSequenceLayer.hpp

src/Clustering/DataLayer.cpp

src/Clustering/EMConsensusSequence.cpp

src/Clustering/EMConsensusSequence.hpp

src/Clustering/EMJoint.cpp

src/Clustering/EMJoint.hpp

src/Clustering/EMRead.cpp

src/Clustering/EMRead.hpp

src/Clustering/EMSequence.cpp

src/Clustering/EMSequence.hpp

src/Clustering/ReadLayer.cpp

src/Clustering/ReadLayer.hpp

src/Clustering/SequenceLayer.cpp

src/Clustering/SequenceLayer.hpp

src/main_test.cpp

Bug in EMSequence apparently corrected. Now there is only a check for small…
cb31ac5cd561
Actions