Diffusion scATAC-seq b3279a0472da

Added code to compute kmer enrichment
b3279a0472da
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Authored by rgroux on Sep 25 2019, 17:20.

Description

Added code to compute kmer enrichment

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Committed

rgroux

Sep 25 2019, 17:20

Pushed

rgroux

Sep 27 2019, 09:16

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R8820:cb31ac5cd561: Bug in EMSequence apparently corrected. Now there is only a check for small…

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rgroux committed R8820:b3279a0472da: Added code to compute kmer enrichment (authored by rgroux).Sep 25 2019, 17:20

Changes (37)

				Path
	V			scripts/10xgenomics_PBMC_5k_peaks_classification_0/{analysis_test_sampled.R → classification_peaks_sampled.R}
	V			scripts/10xgenomics_PBMC_5k_peaks_classification_0/{classification_peaks_sampled.R ← analysis_test_sampled.R}
	M			scripts/10xgenomics_PBMC_5k_peaks_classification_0/run_all.sh
	V			scripts/10xgenomics_PBMC_5k_peaks_classification_1/{analysis_test_sampled.R → classification_peaks_sampled.R}
	V			scripts/10xgenomics_PBMC_5k_peaks_classification_1/{classification_peaks_sampled.R ← analysis_test_sampled.R}
	M			scripts/10xgenomics_PBMC_5k_peaks_classification_1/run_all.sh
	V			scripts/10xgenomics_PBMC_5k_peaks_classification_2/{analysis_test_sampled.R → classification_peaks_sampled.R}
	V			scripts/10xgenomics_PBMC_5k_peaks_classification_2/{classification_peaks_sampled.R ← analysis_test_sampled.R}
	M			scripts/10xgenomics_PBMC_5k_peaks_classification_2/run_all.sh
	V			scripts/10xgenomics_PBMC_5k_peaks_classification_3/{analysis_test_sampled.R → classification_peaks_sampled.R}
	V			scripts/10xgenomics_PBMC_5k_peaks_classification_3/{classification_peaks_sampled.R ← analysis_test_sampled.R}
	M			scripts/10xgenomics_PBMC_5k_peaks_classification_3/run_all.sh
	V			scripts/10xgenomics_PBMC_5k_peaks_classification_4/{analysis_test_sampled.R → classification_peaks_sampled.R}
	V			scripts/10xgenomics_PBMC_5k_peaks_classification_4/{classification_peaks_sampled.R ← analysis_test_sampled.R}
	M			scripts/10xgenomics_PBMC_5k_peaks_classification_4/run_all.sh
	V			scripts/10xgenomics_PBMC_5k_peaks_classification_5/{analysis_test_sampled.R → classification_peaks_sampled.R}
	V			scripts/10xgenomics_PBMC_5k_peaks_classification_5/{classification_peaks_sampled.R ← analysis_test_sampled.R}
	M			scripts/10xgenomics_PBMC_5k_peaks_classification_5/run_all.sh
	V			scripts/10xgenomics_PBMC_5k_peaks_classification_6/{analysis_test_sampled.R → classification_peaks_sampled.R}
	V			scripts/10xgenomics_PBMC_5k_peaks_classification_6/{classification_peaks_sampled.R ← analysis_test_sampled.R}
	M			scripts/10xgenomics_PBMC_5k_peaks_classification_6/classification_peaks_sampled.sh
	M			scripts/10xgenomics_PBMC_5k_peaks_classification_6/run_all.sh
	D			scripts/10xgenomics_PBMC_5k_peaks_classification_7/analysis_test.R
	A			scripts/10xgenomics_PBMC_5k_peaks_classification_7/classification_peaks.R
	M			scripts/10xgenomics_PBMC_5k_peaks_classification_7/classification_peaks.sh
	M			scripts/10xgenomics_PBMC_5k_peaks_classification_7/run_all.sh
	P			src/Applications/.ProbToModelApplication.cpp.swp Copied from scripts/10xgenomics_PBMC_5k/.10xgenomics.sh.swp
	M			src/Applications/ProbToModelApplication.cpp
	M			src/CMakeLists.txt
	A			src/Statistics/KmersStatistics.cpp
	A			src/Statistics/KmersStatistics.hpp
	M			src/Statistics/Statistics.cpp
	M			src/Statistics/Statistics.hpp
	M			src/Utility/dna_utility.cpp
	M			src/Utility/dna_utility.hpp
	A			src/Utility/sorting_utility.hpp
	M			src/main_test.cpp