Diffusion scATAC-seq 9307741499a8

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Authored by rgroux on Sep 2 2019, 09:06.

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rgroux

Sep 2 2019, 09:06

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rgroux

Sep 2 2019, 09:11

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R8820:782b030be48e: save

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rgroux committed R8820:9307741499a8: save (authored by rgroux).Sep 2 2019, 09:06

Changes (43)

				Path
	M			scripts/10xgenomics_PBMC_5k_peaks_classification_1/motif_tree.R
	M			scripts/10xgenomics_PBMC_5k_peaks_classification_2/motif_tree.R
	M			scripts/10xgenomics_PBMC_5k_peaks_classification_3/motif_tree.R
	M			scripts/10xgenomics_PBMC_5k_peaks_classification_5/motif_tree.R
	V			src/Applications/{ClassCorrelationMatrixCreatorApplication.cpp → ClassReadDataCreatorApplication.cpp}
	P			src/Applications/ClassCorrelationMatrixCreatorApplication.hpp Deleted after being copied to multiple locations: src/Applications/ClassReadDataCreatorApplication.hpp src/Applications/ClassSequenceDataCreatorApplication.hpp
	V			src/Applications/{ClassReadDataCreatorApplication.cpp ← ClassCorrelationMatrixCreatorApplication.cpp}
	P			src/Applications/ClassReadDataCreatorApplication.hpp Copied from src/Applications/ClassCorrelationMatrixCreatorApplication.hpp
	A			src/Applications/ClassSequenceDataCreatorApplication.cpp
	V			src/Applications/{ClassSequenceDataCreatorApplication.hpp ← ClassCorrelationMatrixCreatorApplication.hpp}
	M			src/CMakeLists.txt
	M			src/Clustering/ConsensusSequenceLayer.cpp
	P			src/Clustering/ConsensusSequenceLayer.hpp Copied from src/Clustering/SequenceLayer.hpp
	P			src/Clustering/Data2DLayer.cpp Copied from src/Clustering/DataLayer.cpp
	A			src/Clustering/Data2DLayer.hpp
	A			src/Clustering/Data3DLayer.cpp
	A			src/Clustering/Data3DLayer.hpp
	P			src/Clustering/DataLayer.cpp Copied to src/Clustering/Data2DLayer.cpp
	M			src/Clustering/DataLayer.hpp
	P			src/Clustering/EMConsensusSequence.cpp Copied from src/Clustering/EMRead.cpp
	P			src/Clustering/EMConsensusSequence.hpp Copied from src/Clustering/EMRead.hpp
	M			src/Clustering/EMJoint.cpp
	M			src/Clustering/EMJoint.hpp
	P			src/Clustering/EMRead.cpp Copied to src/Clustering/EMConsensusSequence.cpp
	P			src/Clustering/EMRead.hpp Copied to src/Clustering/EMConsensusSequence.hpp
	M			src/Clustering/EMSequence.cpp
	M			src/Clustering/EMSequence.hpp
	M			src/Clustering/ReadLayer.cpp
	M			src/Clustering/ReadLayer.hpp
	M			src/Clustering/SequenceLayer.cpp
	P			src/Clustering/SequenceLayer.hpp Copied to src/Clustering/ConsensusSequenceLayer.hpp
	A			src/GenomicTools/ClassReadDataCreator.cpp
	A			src/GenomicTools/ClassReadDataCreator.hpp
	A			src/GenomicTools/ClassSequenceDataCreator.cpp
	A			src/GenomicTools/ClassSequenceDataCreator.hpp
	M			src/GenomicTools/CorrelationMatrixCreator.cpp
	M			src/GenomicTools/MatrixCreator.cpp
	M			src/GenomicTools/MatrixCreator.hpp
	M			src/GenomicTools/SequenceMatrixCreator.cpp
	M			src/GenomicTools/SequenceMatrixCreator.hpp
	M			src/Utility/dna_utility.cpp
	M			src/Utility/dna_utility.hpp
	M			src/main_test.cpp