Diffusion scATAC-seq d777fdf7e152

save
d777fdf7e152
Actions

Authored by rgroux on Jul 11 2019, 11:05.

Description

save

Details

Committed

rgroux

Jul 11 2019, 11:05

Pushed

rgroux

Jul 11 2019, 11:10

Parents

R8820:fcead3d81371: Work in progress to have a multi-layer EM classification

Branches

Unknown

Tags

Unknown

Event Timeline

rgroux committed R8820:d777fdf7e152: save (authored by rgroux).Jul 11 2019, 11:05

Changes (63)

		Path
M		scripts/10xgenomics_PBMC_5k_classification_1/classification_ctcf_motif.sh
M		scripts/10xgenomics_PBMC_5k_classification_1/classification_ebf1_motif.sh
M		scripts/10xgenomics_PBMC_5k_classification_1/classification_myc_motif.sh
M		scripts/10xgenomics_PBMC_5k_classification_1/classification_sp1_motif.sh
M		scripts/10xgenomics_PBMC_5k_classification_2/classification_ctcf_motif.sh
M		scripts/10xgenomics_PBMC_5k_classification_2/classification_ebf1_motif.sh
M		scripts/10xgenomics_PBMC_5k_classification_2/classification_myc_motif.sh
M		scripts/10xgenomics_PBMC_5k_classification_2/classification_sp1_motif.sh
M		src/Applications/ChIPPartitioningApplication.cpp
M		src/Applications/ChIPPartitioningApplication.hpp
D		src/Applications/ChIPPartitioningApplicationNew.cpp
D		src/Applications/ChIPPartitioningApplicationNew.hpp
M		src/Applications/ProbToModelApplication.hpp
D		src/Applications/ProbToRefApplication.cpp
D		src/Applications/ProbToRefApplication.hpp
M		src/CMakeLists.txt
P	(dir)	src/Clustering/ Copied to src/Clustering.old
P	(dir)	src/Clustering.old/ Copied from src/Clustering
V		src/{Clustering.old ← Clustering}/ClusteringEngine.cpp
V		src/{Clustering.old ← Clustering}/ClusteringEngine.hpp
V		src/{Clustering.old ← Clustering}/EMEngine.cpp
V		src/{Clustering.old ← Clustering}/EMEngine.hpp
V		src/{Clustering.old ← Clustering}/ReferenceComputer.cpp
V		src/{Clustering.old ← Clustering}/ReferenceComputer.hpp
V		src/{Clustering.old ← Clustering}/typedef.hpp
V		src/{Clustering → Clustering.old}/ClusteringEngine.cpp
V		src/{Clustering → Clustering.old}/ClusteringEngine.hpp
V		src/{Clustering ← ClusteringNew}/DataLayer.cpp
V		src/{Clustering ← ClusteringNew}/DataLayer.hpp
V		src/{Clustering → Clustering.old}/EMEngine.cpp
V		src/{Clustering → Clustering.old}/EMEngine.hpp
V		src/{Clustering ← ClusteringNew}/ModelComputer.cpp
V		src/{Clustering ← ClusteringNew}/ModelComputer.hpp
V		src/{Clustering ← ClusteringNew}/ReadLayer.cpp
V		src/{Clustering ← ClusteringNew}/ReadLayer.hpp
V		src/{Clustering ← ClusteringNew}/ReadModelComputer.cpp
V		src/{Clustering ← ClusteringNew}/ReadModelComputer.hpp
V		src/{Clustering → Clustering.old}/ReferenceComputer.cpp
V		src/{Clustering → Clustering.old}/ReferenceComputer.hpp
V		src/{Clustering ← ClusteringNew}/SequenceLayer.cpp
V		src/{Clustering ← ClusteringNew}/SequenceLayer.hpp
V		src/{Clustering ← ClusteringNew}/SequenceModelComputer.cpp
V		src/{Clustering ← ClusteringNew}/SequenceModelComputer.hpp
V		src/{Clustering → Clustering.old}/typedef.hpp
D		src/ClusteringNew
V		src/{ClusteringNew → Clustering}/DataLayer.cpp
D		src/ClusteringNew/DataLayer.cpp.save
V		src/{ClusteringNew → Clustering}/DataLayer.hpp
D		src/ClusteringNew/DataLayer.hpp.save
V		src/ClusteringNew/EMEngineNew.cpp
V		src/ClusteringNew/EMEngineNew.hpp
V		src/{ClusteringNew → Clustering}/ModelComputer.cpp
V		src/{ClusteringNew → Clustering}/ModelComputer.hpp
V		src/{ClusteringNew → Clustering}/ReadLayer.cpp
V		src/{ClusteringNew → Clustering}/ReadLayer.hpp
V		src/{ClusteringNew → Clustering}/ReadModelComputer.cpp
V		src/{ClusteringNew → Clustering}/ReadModelComputer.hpp
V		src/{ClusteringNew → Clustering}/SequenceLayer.cpp
V		src/{ClusteringNew → Clustering}/SequenceLayer.hpp
V		src/{ClusteringNew → Clustering}/SequenceModelComputer.cpp
V		src/{ClusteringNew → Clustering}/SequenceModelComputer.hpp
M		src/main_em.cpp
M		src/main_em2.cpp