Corrections done in ENCODE peak part Corrections done in SPar-K part…
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Authored by rgroux on Jan 17 2020, 17:14.

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Corrections done in ENCODE peak part Corrections done in SPar-K part Modification to lower size of PDF: All SPar-K figures remade in png with lower res Most scATAC-seq images redone with lower res

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rgroux

Jan 17 2020, 17:14

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rgroux

Jan 17 2020, 17:15

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R9524:cf47b11d2185: Corrections done in intro part Corrections done in discussion part

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rgroux committed R9524:9c4e9be36fc2: Corrections done in ENCODE peak part Corrections done in SPar-K part… (authored by rgroux).Jan 17 2020, 17:14

Changes (35)

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	M			images/ch_atac-seq/data_classCTCF_8class.png
	M			images/ch_atac-seq/data_classPU.1_2class.png
	M			images/ch_atac-seq/data_classjun_3class.png
	M			images/ch_atac-seq/peaks_rmsk_sampled_sequences_23class.png
	M			images/ch_atac-seq/simulated_sequences_2class_flip_auc_roc.png
	M			images/ch_atac-seq/simulated_sequences_2class_flip_best_motifs.png
	M			images/ch_atac-seq/sp1_motifs_6class_noshift_flip.png
	M			images/ch_atac-seq/sp1_motifs_6class_shift_flip.png
	D			images/ch_spark/figure1.pdf
	A			images/ch_spark/figure1.png
	D			images/ch_spark/supplemental_figure1.pdf
	A			images/ch_spark/supplemental_figure1.png
	D			images/ch_spark/supplemental_figure2.pdf
	A			images/ch_spark/supplemental_figure2.png
	D			images/ch_spark/supplemental_figure4.pdf
	A			images/ch_spark/supplemental_figure4.png
	D			images/ch_spark/supplemental_figure5.pdf
	A			images/ch_spark/supplemental_figure5.png
	D			images/ch_spark/supplemental_figure8.pdf
	A			images/ch_spark/supplemental_figure8.png
	M			main/ch_encode_peaks.aux
	M			main/ch_encode_peaks.tex
	M			main/ch_spark.aux
	M			main/ch_spark.tex
	M			my_thesis.aux
	M			my_thesis.blg
	M			my_thesis.log
	M			my_thesis.pdf
	M			my_thesis.synctex.gz
	M			my_thesis.toc
	M			scripts/ch_atac-seq/figure_ctcf_6classes.R
	M			scripts/ch_atac-seq/figure_ctcf_sp1_myc_ebf1_footprint.R
	M			scripts/ch_atac-seq/figure_sp1_6classes.R
	A			scripts/ch_spark/figures.R
	M			scripts/ch_spark/get_figures.sh