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Diffusion tfbs_annotate_FIMO (master) Graph

R10523/scripts
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CommitAuthorDetailsCommitted
f61890f69f76pulver
swissregulon scan in TEs 
May 5 2021
1ed5a91f7632pulver
swissregulon tss clustered 
Apr 23 2021
b8b8477cd08cpulver
swissregulon scan of tss clusters, protein coding genes 
Apr 22 2021
6019ae089167pulver
swissregulon scan of TE in windows 
Apr 21 2021
0d8b7056863apulver
producing results dir 
Apr 12 2021
4430ecaacffapulver
local scratch path 
Apr 12 2021
ccac380801c4pulver
correcting download of ucsc binaries 
Apr 12 2021
154a103238b8pulver
local analysis 
Apr 12 2021
cf4612682d98pulver
analysis performed on the local machine 
Apr 12 2021
a1d993c0bab8pulver
update 
Apr 8 2021
2e934c17f90bpulver
annotating hg19 promoters with ambrosini best4gene 
Aug 24 2020
5360dc02d451pulver
added header to result file 
Aug 19 2020
2e72ce521fd6pulver
concatenate and sort using unix sort instead of pandas 
Aug 19 2020
b1adb46512f4pulver
MEME format background model for 0-order, taking both strands into account 
Aug 19 2020
fe8cff74718apulver
compute background frequencies 
Aug 18 2020
09191d77acf2pulver
download faCount with script 
Aug 18 2020
c996bff49f9bpulver
writing output to file directly in each process (speed), subprocess.run instead… 
Jul 1 2020
473da4e5dc1fpulver
removed matched sequences from output 
Jun 30 2020
b6d9ba449a47pulver
pool instead of threadpool, using text output to standard output to avoid huge… 
Jun 30 2020
54c09d669aaepulver
added input argv where necessary, still not optimal. Launched the analysis on… 
Jun 29 2020
73d080087c1cpulver
working script for simple run_fimo 
Jun 29 2020
8c9cdf69492dpulver
moved temp to scratch, run fimo on toy example, without scheduler 
Jun 29 2020
72b0aec13785pulver
extract fasta 
Jun 29 2020
49de628d2146pulver
gitignore, split bed file 
Jun 29 2020
cc02afdf5e57pulver
twoBitToFa 
Jun 26 2020
7ac2c32a2451pulver
download reference genome script 
Jun 26 2020
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