Graphmaster
Graph
master
History Graph
History Graph
Commit | Author | Details | Committed | ||||
---|---|---|---|---|---|---|---|
9f72c32f6675 | laurenczy | Removing MelArray repo from master branch | May 7 2018 | ||||
d6189be88816 | laurenczy | Typo | May 7 2018 | ||||
7613678dd452 | laurenczy | Updated README | May 7 2018 | ||||
03d1a3713b79 | laurenczy | Adding MelArray repository | May 7 2018 | ||||
3279c9f29cb2 | kashev | Dry-run functionality | Nov 27 2017 | ||||
59f3b2b72af7 | kashev | Template command | Nov 27 2017 | ||||
806dde518604 | laurenczy | Updates after testing | Oct 13 2017 | ||||
a6553f67ba20 | laurenczy | Added different configurations | Oct 13 2017 | ||||
467127cb1972 | laurenczy | Changing build and run scripts to separate steps | Oct 13 2017 | ||||
a5554b2887ea | laurenczy | Bugfixes | Oct 13 2017 | ||||
43f797536bbb | laurenczy | Bugfixes | Oct 13 2017 | ||||
79b8de8cf215 | laurenczy | Added python + cuda config | Oct 13 2017 | ||||
0156083bd4f3 | laurenczy | Added python + cuda config | Oct 13 2017 | ||||
d040f01e1881 | laurenczy | Updates for testing | Oct 13 2017 | ||||
bc3c23a87406 | laurenczy | Updates for testing | Oct 13 2017 | ||||
db6b13fa31bd | laurenczy | Updating runner config file | Oct 13 2017 | ||||
688462c08f42 | laurenczy | Updated building and running scripts | Oct 13 2017 | ||||
a00fd86c981d | laurenczy | Updated Dockerfiles for cudnn library | Oct 12 2017 | ||||
11692fe2863b | laurenczy | Updated Singularity images runner script to test for tensorflow | Oct 12 2017 | ||||
bea67b54dc79 | laurenczy | Updated LD_LIBRARY_PATH definitions | Oct 12 2017 | ||||
a80b2c1c0190 | laurenczy | Updated running script | Oct 12 2017 | ||||
67fe47664b4c | laurenczy | Added test script and running script | Oct 12 2017 | ||||
b9bf6c0eddc6 | laurenczy | Updating pulling script | Oct 12 2017 | ||||
74e80d38f60d | laurenczy | Added GPU Dockerfiles | Oct 12 2017 | ||||
17a6f64dceac | laurenczy | Changing the container creation | Aug 25 2017 | ||||
619ccbcf7002 | laurenczy | Adding MPI over ethernet submission scripts | Aug 23 2017 | ||||
13fc090e376c | laurenczy | Adding MPI over ethernet submission scripts | Aug 23 2017 | ||||
055030e15783 | laurenczy | Merge branch 'master' of ssh://c4science.ch/diffusion/2915/esct-pipeline… | Aug 23 2017 | ||||
2aad49e7de90 | laurenczy | Removing temporary notes file | Aug 23 2017 | ||||
bc45aa9e34a6 | laurenczy | Removing bad logs | Aug 23 2017 | ||||
862c01026060 | laurenczy | Added LSF sumbission logs | Aug 23 2017 | ||||
dd79edaa35d9 | laurenczy | Added tilling submission scripts | Aug 23 2017 | ||||
f5be7e83ff6e | laurenczy | Fixing CUDA parameter in submission scripts | Aug 22 2017 | ||||
65cee79109aa | laurenczy | Updating launching script | Aug 22 2017 | ||||
6e41f720c7c9 | laurenczy | Updating launching script | Aug 22 2017 | ||||
216ef40c4fec | laurenczy | Added LSF job launching script | Aug 22 2017 | ||||
a542b873640b | laurenczy | Added no CUDA versions of LSF scripts | Aug 22 2017 | ||||
f83d3a7bb197 | laurenczy | Added .out extension to log files | Aug 22 2017 | ||||
61d8604e0874 | laurenczy | Added no container script | Aug 22 2017 | ||||
5f87b95ca8ed | laurenczy | Merge branch 'master' of https://c4science.ch/diffusion/2915/esct-pipeline… | Aug 22 2017 | ||||
fc109dd6439d | laurenczy | Added Singularity build scritp | Aug 22 2017 | ||||
4b2d7443f497 | laurenczy | Added LSF submission scripts | Aug 22 2017 | ||||
1bd341d02d96 | laurenczy | Fixed version number | Aug 22 2017 | ||||
06e90b3f25ec | laurenczy | Fixed version number | Aug 22 2017 | ||||
96b5a036c592 | laurenczy | Added pushing script | Aug 22 2017 | ||||
5ab0f7969cb5 | laurenczy | Fixed Dockerfile for LD_LIBRARY_PATH and PATH variables | Aug 22 2017 | ||||
974c8ef4235c | laurenczy | Added docker images building script | Aug 22 2017 | ||||
98bb54e0f689 | laurenczy | Deleting logs from repo | Aug 22 2017 | ||||
c32b5b9f3aa0 | laurenczy | Ordering files, renaming, adding comments | Aug 22 2017 | ||||
06a1296c950b | laurenczy | Added Dockerfile and YAML file | Aug 14 2017 | ||||
286888735b82 | laurenczy | Added MPI folder | Aug 14 2017 | ||||
1bcec4e2b0e1 | kashev | Packaged for PyPi | Jul 20 2017 | ||||
25877569f9e0 | kashev | Added docker2singularity build type; binds; {run}/{exec} | Jul 20 2017 | ||||
1de174bfdd99 | kashev | Binds section, refactor substitutions | Jul 17 2017 | ||||
b80d3d163280 | • sduvaud | Added HTML validation | Jul 7 2017 | ||||
1dd1e2c8127b | heinzstockinger | removed wrapper.sh which is already in container" | Jun 28 2017 | ||||
072d723992fe | Heinz Stockinger | added SIB-publications example | Jun 28 2017 | ||||
41139a0fa5b1 | laurenczy | Added config file for hello_world | Jun 23 2017 | ||||
f5ec274b5772 | laurenczy | Tested runner script, made a python3 version | Jun 23 2017 | ||||
2dda3e0d84ca | kashev | Merge branch 'master' of ssh://c4science.ch/diffusion/2915/esct-pipeline… | Jun 22 2017 | ||||
6f09d9c943be | kashev | First version of pipeline runner script. Still WIP but functional, with… | Jun 22 2017 | ||||
87ebc08e65e2 | laurenczy | Added own version of docker2singularity to try to reduce size of converted image | Jun 22 2017 | ||||
917c7dbef8a7 | laurenczy | Added tests for hello world light | Jun 22 2017 | ||||
5312e3ee74a5 | laurenczy | Changing LSF submission scripts for pipeline1 (more memory) | Jun 14 2017 | ||||
dc47940dd1f2 | laurenczy | Changing LSF submission scripts for pipeline1 (more memory) | Jun 14 2017 | ||||
05ccf8c0695c | laurenczy | Changing LSF submission scripts for pipeline1 | Jun 14 2017 | ||||
a26dfaf7ef80 | laurenczy | Changing LSF submission scripts | Jun 13 2017 | ||||
ba52ee6fa89f | laurenczy | Changing LSF submission scripts | Jun 13 2017 | ||||
c7b9f3ad048f | laurenczy | Added bowtie2 installation to pipeline2 Dockerfile | Jun 13 2017 | ||||
f45978fdd4bb | laurenczy | Testing pipelines with singularity pull | Jun 13 2017 | ||||
630423d182f8 | laurenczy | Testing private GitLab (1) | Jun 12 2017 | ||||
03a5875e56d2 | • sduvaud | First pipeline. Not tested | Jun 9 2017 | ||||
21e422a4ed5e | • sduvaud | Adapting Pablo's pipeline #2 to Vital-it | Jun 9 2017 | ||||
cb2b6168f33f | Pablo Escobar | define the singularity container as a variable | Jun 8 2017 | ||||
10da60ad112f | Pablo Escobar | some style fixes in the submit scripts | Jun 8 2017 | ||||
dc1a57f4a561 | Pablo Escobar | use modules to load Singularity | Jun 8 2017 | ||||
bc74245c0363 | laurenczy | Added Dockerfile for pipeline2 and some scripts, started pipeline1 snakemake… | Jun 1 2017 | ||||
21ff5170b17d | laurenczy | Updated the hello world pipeline. Provided download link for the Singularity… | May 30 2017 | ||||
14c3d834a9d5 | laurenczy | BugFix for pipeline1 | May 30 2017 | ||||
a137d06ae1a0 | laurenczy | Changing parameters for pipeline1 | May 30 2017 | ||||
4e03d975d3e8 | laurenczy | Changing parameters for pipeline1 | May 30 2017 | ||||
05611b7b8bbd | laurenczy | Changing parameters for pipeline1 | May 30 2017 | ||||
623b95a9f0cf | laurenczy | Changing parameters for pipeline1 | May 30 2017 | ||||
645b3e1d6f40 | laurenczy | Adapted submission script to LSF (running on Euler) for pipeline2 | May 29 2017 | ||||
5f9551340c48 | laurenczy | Adapted submission script to LSF (running on Euler) | May 29 2017 | ||||
b6c0776b9425 | laurenczy | Changing folder structure | May 29 2017 | ||||
48986a51e8d8 | Pablo Escobar | updated README files with the right download urls | May 24 2017 | ||||
abd314c44cfa | Pablo Escobar | added vcftools to the singularity bootstrap file | May 24 2017 | ||||
ba029b9382ca | Pablo Escobar | renamed output log | May 22 2017 | ||||
6116ad61478a | Pablo Escobar | added bootstrap file and submit script using containers for pipeline2 | May 22 2017 | ||||
5b9e8cc39cdc | Pablo Escobar | added submit scripts without containers for pipeline2 | May 19 2017 | ||||
f7b55cb712f3 | Pablo Escobar | udpate README with the url to download the singularity container | May 19 2017 | ||||
d35eeca0493d | Pablo Escobar | renamed README file | May 19 2017 | ||||
1c1d706558d8 | Pablo Escobar | added submit script using singularity containers | May 19 2017 | ||||
0c09cee61b87 | Pablo Escobar | update submit script without containers to use a different output dir | May 19 2017 | ||||
b06c9dfdf23c | Pablo Escobar | first commit for pipeline1 | May 19 2017 | ||||
b590df206853 | laurenczy | Small fixes | May 2 2017 | ||||
f9d26fef981b | laurenczy | Testing scicore pipeline... | Apr 28 2017 | ||||
65c2a27f3f55 | laurenczy | Updating pipelines, work in progress... | Apr 28 2017 | ||||
bb36f5cef5b2 | laurenczy | Renaming pipelines, adding tests for sciCORE's pipeline | Apr 28 2017 |
c4science · Help