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Diffusion eSCT pipeline interoperability (master) Graph

R2915/SIS
master

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CommitAuthorDetailsCommitted
9f72c32f6675laurenczy
Removing MelArray repo from master branch 
May 7 2018
d6189be88816laurenczy
Typo 
May 7 2018
7613678dd452laurenczy
Updated README 
May 7 2018
03d1a3713b79laurenczy
Adding MelArray repository 
May 7 2018
806dde518604laurenczy
Updates after testing 
Oct 13 2017
a6553f67ba20laurenczy
Added different configurations 
Oct 13 2017
467127cb1972laurenczy
Changing build and run scripts to separate steps 
Oct 13 2017
79b8de8cf215laurenczy
Added python + cuda config 
Oct 13 2017
0156083bd4f3laurenczy
Added python + cuda config 
Oct 13 2017
d040f01e1881laurenczy
Updates for testing 
Oct 13 2017
bc3c23a87406laurenczy
Updates for testing 
Oct 13 2017
db6b13fa31bdlaurenczy
Updating runner config file 
Oct 13 2017
688462c08f42laurenczy
Updated building and running scripts 
Oct 13 2017
a00fd86c981dlaurenczy
Updated Dockerfiles for cudnn library 
Oct 12 2017
11692fe2863blaurenczy
Updated Singularity images runner script to test for tensorflow 
Oct 12 2017
bea67b54dc79laurenczy
Updated LD_LIBRARY_PATH definitions 
Oct 12 2017
a80b2c1c0190laurenczy
Updated running script 
Oct 12 2017
67fe47664b4claurenczy
Added test script and running script 
Oct 12 2017
b9bf6c0eddc6laurenczy
Updating pulling script 
Oct 12 2017
74e80d38f60dlaurenczy
Added GPU Dockerfiles 
Oct 12 2017
17a6f64dceaclaurenczy
Changing the container creation 
Aug 25 2017
619ccbcf7002laurenczy
Adding MPI over ethernet submission scripts 
Aug 23 2017
13fc090e376claurenczy
Adding MPI over ethernet submission scripts 
Aug 23 2017
055030e15783laurenczy
Merge branch 'master' of ssh://c4science.ch/diffusion/2915/esct-pipeline… 
Aug 23 2017
2aad49e7de90laurenczy
Removing temporary notes file 
Aug 23 2017
bc45aa9e34a6laurenczy
Removing bad logs 
Aug 23 2017
862c01026060laurenczy
Added LSF sumbission logs 
Aug 23 2017
dd79edaa35d9laurenczy
Added tilling submission scripts 
Aug 23 2017
f5be7e83ff6elaurenczy
Fixing CUDA parameter in submission scripts 
Aug 22 2017
65cee79109aalaurenczy
Updating launching script 
Aug 22 2017
6e41f720c7c9laurenczy
Updating launching script 
Aug 22 2017
216ef40c4feclaurenczy
Added LSF job launching script 
Aug 22 2017
a542b873640blaurenczy
Added no CUDA versions of LSF scripts 
Aug 22 2017
f83d3a7bb197laurenczy
Added .out extension to log files 
Aug 22 2017
61d8604e0874laurenczy
Added no container script 
Aug 22 2017
5f87b95ca8edlaurenczy
Merge branch 'master' of https://c4science.ch/diffusion/2915/esct-pipeline… 
Aug 22 2017
fc109dd6439dlaurenczy
Added Singularity build scritp 
Aug 22 2017
4b2d7443f497laurenczy
Added LSF submission scripts 
Aug 22 2017
1bd341d02d96laurenczy
Fixed version number 
Aug 22 2017
06e90b3f25eclaurenczy
Fixed version number 
Aug 22 2017
96b5a036c592laurenczy
Added pushing script 
Aug 22 2017
5ab0f7969cb5laurenczy
Fixed Dockerfile for LD_LIBRARY_PATH and PATH variables 
Aug 22 2017
974c8ef4235claurenczy
Added docker images building script 
Aug 22 2017
98bb54e0f689laurenczy
Deleting logs from repo 
Aug 22 2017
c32b5b9f3aa0laurenczy
Ordering files, renaming, adding comments 
Aug 22 2017
06a1296c950blaurenczy
Added Dockerfile and YAML file 
Aug 14 2017
286888735b82laurenczy
Added MPI folder 
Aug 14 2017
41139a0fa5b1laurenczy
Added config file for hello_world 
Jun 23 2017
f5ec274b5772laurenczy
Tested runner script, made a python3 version 
Jun 23 2017
87ebc08e65e2laurenczy
Added own version of docker2singularity to try to reduce size of converted image 
Jun 22 2017
917c7dbef8a7laurenczy
Added tests for hello world light 
Jun 22 2017
5312e3ee74a5laurenczy
Changing LSF submission scripts for pipeline1 (more memory) 
Jun 14 2017
dc47940dd1f2laurenczy
Changing LSF submission scripts for pipeline1 (more memory) 
Jun 14 2017
05ccf8c0695claurenczy
Changing LSF submission scripts for pipeline1 
Jun 14 2017
a26dfaf7ef80laurenczy
Changing LSF submission scripts 
Jun 13 2017
ba52ee6fa89flaurenczy
Changing LSF submission scripts 
Jun 13 2017
c7b9f3ad048flaurenczy
Added bowtie2 installation to pipeline2 Dockerfile 
Jun 13 2017
f45978fdd4bblaurenczy
Testing pipelines with singularity pull 
Jun 13 2017
630423d182f8laurenczy
Testing private GitLab (1) 
Jun 12 2017
bc74245c0363laurenczy
Added Dockerfile for pipeline2 and some scripts, started pipeline1 snakemake… 
Jun 1 2017
21ff5170b17dlaurenczy
Updated the hello world pipeline. Provided download link for the Singularity… 
May 30 2017
14c3d834a9d5laurenczy
BugFix for pipeline1 
May 30 2017
a137d06ae1a0laurenczy
Changing parameters for pipeline1 
May 30 2017
4e03d975d3e8laurenczy
Changing parameters for pipeline1 
May 30 2017
05611b7b8bbdlaurenczy
Changing parameters for pipeline1 
May 30 2017
623b95a9f0cflaurenczy
Changing parameters for pipeline1 
May 30 2017
645b3e1d6f40laurenczy
Adapted submission script to LSF (running on Euler) for pipeline2 
May 29 2017
5f9551340c48laurenczy
Adapted submission script to LSF (running on Euler) 
May 29 2017
b6c0776b9425laurenczy
Changing folder structure 
May 29 2017
b590df206853laurenczy
Small fixes 
May 2 2017
f9d26fef981blaurenczy
Testing scicore pipeline... 
Apr 28 2017
65c2a27f3f55laurenczy
Updating pipelines, work in progress... 
Apr 28 2017
bb36f5cef5b2laurenczy
Renaming pipelines, adding tests for sciCORE's pipeline 
Apr 28 2017
42362601403blaurenczy
Added first version of the basic 'hello world' pipeline 
Apr 21 2017
86f5e6f22b31laurenczy
Added SIS folder 
Mar 24 2017
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