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History Graph
History Graph
Commit | Author | Details | Committed | ||||
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35e89619726a | tlemaire | emphasized repo transfer in README | Jul 30 2021 | ||||
79b6344a45b9 | tlemaire | updated README | Jul 29 2021 | ||||
bf72efeef808 | tlemaire | introduced unit_dim parameter in si_format | Jun 23 2021 | ||||
c6e727d2a53d | tlemaire | added pass-on of kwargs from simAndSave to simulate | Jun 22 2021 | ||||
b78d4c569bdd | tlemaire | fixed sampleEvery method | Jun 22 2021 | ||||
3c6a53030dea | tlemaire | added sampleEvery method to timeseries object to have a common loadData | Jun 22 2021 | ||||
888fa278603f | tlemaire | added full_output option to simAndSave function | Jun 20 2021 | ||||
2372e0a6dd73 | tlemaire | replaced gamma indications by axvspans in FiberBenchmark.plotQm | Jun 19 2021 | ||||
8b1c341f8737 | tlemaire | corrected gamma indicators plotting in FiberBenchmark.plotQm | Jun 18 2021 | ||||
fcc7da6f1233 | tlemaire | added divarea and convarea rendering modes to XYMap.render | Jun 18 2021 | ||||
41830bd40849 | tlemaire | updated transient divergence evaluation in passive benchmark | Jun 17 2021 | ||||
4792bed35eeb | tlemaire | added XYMap.extrapolate method. modified XYMap.getOutput to return (nx, nz)… | Jun 17 2021 | ||||
1e6c565cde54 | tlemaire | modified exponential build up assessment in passive benchmark | Jun 16 2021 | ||||
d84713700744 | tlemaire | removed clip_on statements | Jun 16 2021 | ||||
48840d13cdab | tlemaire | added frac_format function. added inaxes check upon map clicking in XYMap | Jun 16 2021 | ||||
7368aa8d6260 | tlemaire | added getTimeStr function (now used in Batch.run) | Jun 16 2021 | ||||
d3109cf80990 | tlemaire | added minimize overlap argument on protocol array initialization | Jun 15 2021 | ||||
a34dc74734dc | tlemaire | added functionalities to optimize protocol array (minimizing overlap) | Jun 15 2021 | ||||
92d6fbb787e5 | tlemaire | removed print statement in ProtocolArray.plot | Jun 15 2021 | ||||
c811bdc9181b | tlemaire | defined StimObjArray class, niherited by DriveArray and ProtocolArray classes | Jun 14 2021 | ||||
0732d479739d | tlemaire | modified CustomProtocol string representation, enabled robut protocol summing… | Jun 9 2021 | ||||
f456a30eea93 | tlemaire | added os_name as logbal variable in utils. now using it also to output LogBatch. | Jun 9 2021 | ||||
d660732a8200 | tlemaire | implemented addition between time protocols and multiplication by scalar | Jun 9 2021 | ||||
41522f45c0c7 | tlemaire | added workaround to coupled_nbls simAndSave method to handle long filepaths on… | Jun 9 2021 | ||||
82b931897c27 | tlemaire | worked on benchmark plotting modularity | Jun 8 2021 | ||||
4f17c4046cf6 | tlemaire | corrected benchmarks plotting and evaluation methods | Jun 8 2021 | ||||
5e1899de25b9 | tlemaire | added special case handling for phi-key in DriveArray | Jun 7 2021 | ||||
1e4c694a74a1 | tlemaire | corrected sundt spike height criterion for detection | Jun 6 2021 | ||||
1a8775592b0c | tlemaire | modified sundt spike detection settings | Jun 5 2021 | ||||
a182936772ae | tlemaire | added subset argument to FiberBenchmark.runSimsOverAmplitudeSpace in order to… | Jun 3 2021 | ||||
1ee42570341d | tlemaire | added benchmark nodecolors and periodicity line patterns | May 31 2021 | ||||
aa1ff7ae0ea8 | tlemaire | corrected XYMap.addInsets to work with out or range insets | May 30 2021 | ||||
0a593ebe88fb | tlemaire | updated pandas requirements (now >=1.2.4) to ensure TimeSeries object are… | May 28 2021 | ||||
aa3b06ccb8aa | tlemaire | added new passive lookups at 20kHz and 4MHz | May 28 2021 | ||||
da9013ba10c1 | tlemaire | corrected indent error in run_lookups | May 28 2021 | ||||
3dd0e7ca4b5c | tlemaire | added pneuron.is_passive property and getDefaultPassiveNeuron function | May 28 2021 | ||||
b608770eae52 | tlemaire | adapted parser for passive lookups | May 28 2021 | ||||
47f7640b7bcb | tlemaire | added factor to Qnorm pltvar. | May 27 2021 | ||||
bf6c2c1e96e5 | tlemaire | untracked sublime-project file | May 27 2021 | ||||
143fbd37ca59 | tlemaire | added special case handling to find lookups name | May 27 2021 | ||||
417a3bd45505 | tlemaire | replaced computeDiffAreaUnderCurve by computeMeanNormDifference (more robust… | May 26 2021 | ||||
87ed4cd909be | tlemaire | corrected nan values handling in XYMap. | May 26 2021 | ||||
fde48404e155 | tlemaire | improved FiberBenchmark | May 26 2021 | ||||
02b5fdf9949f | tlemaire | added new divmaps module. | May 26 2021 | ||||
a4d16de1fb6a | tlemaire | added divergence computation methods to benchmarks | May 25 2021 | ||||
c187b85f3573 | tlemaire | improved naming, access and iterating of DriveArray objects. | May 25 2021 | ||||
b4ccaf49772d | tlemaire | modified xscale in benchmark 2D plot | May 20 2021 | ||||
41fde2c39385 | tlemaire | modified coupled_nbls.simAndSave to just simulate if no output directory is… | May 19 2021 | ||||
f4282fb16d90 | tlemaire | added plot utility functions | May 19 2021 | ||||
35b4216f3b21 | tlemaire | added option to initialize passive neuron from name code. added initFromMeta… | May 19 2021 | ||||
40ac2cbf792f | tlemaire | added workaround solution for passive generic lookup name | May 19 2021 | ||||
06fa67d560c2 | tlemaire | added resample and interpolate methods to spatiallyextendedtimeseries class | May 18 2021 | ||||
3d60eae04053 | tlemaire | added dump and dumpOutputsOtherThan methods to TimeSeries classes | May 18 2021 | ||||
66afa784ef55 | tlemaire | added half-cycle offset and interpolation in timeseries cycle averaging | May 17 2021 | ||||
a855f3b52095 | tlemaire | fixed error in run_lookups (inconsistent redimensioning for test case) | May 17 2021 | ||||
575ad8b758ee | tlemaire | clarified terms in gamma functions | May 17 2021 | ||||
9b83a80b55f5 | tlemaire | started implementing gamma evaluation method | May 17 2021 | ||||
23adeab812fd | tlemaire | started working on coupled_nbls module | May 15 2021 | ||||
6aadfe75ac22 | tlemaire | started working on coupled_nbls module | May 14 2021 | ||||
4ca2ae140d75 | tlemaire | added test_Qovertones.py test script | May 11 2021 | ||||
5a9cf900fc2b | tlemaire | added context to README | Apr 13 2021 | ||||
5159d5ca1d87 | tlemaire | improved logging in nbls.computeEffVars | Mar 26 2021 | ||||
f23057d86a6e | tlemaire | improved error logging in bls.balancedefQS. | Mar 26 2021 | ||||
b4233b34e678 | tlemaire | improved lookup naming system (and renamed all lookups accordingly). | Mar 23 2021 | ||||
7d732f9d2c25 | tlemaire | adapted nbls.computeEffVars method to accomodate for Fourier Fourier overtones… | Mar 23 2021 | ||||
e7842427f677 | tlemaire | added array-typed charge input (i.e. US-periodic profile) option to… | Mar 23 2021 | ||||
215b15082b72 | tlemaire | small corrections in demo notebook | Mar 18 2021 | ||||
1b7cf6045963 | tlemaire | updated setup file. corrected some imports in notebooks (AcousticSource ->… | Mar 16 2021 | ||||
cbeb67523b66 | tlemaire | corrected Cm lkp extension | Mar 5 2021 | ||||
0df71d46a8b6 | tlemaire | added emphasis on git-lfs requirement in REAMDE. | Mar 3 2021 | ||||
28b9ed25d674 | tlemaire | added transition handling in computeTimeStep. | Mar 2 2021 | ||||
573f1807c8e3 | tlemaire | updated pandas requirements in setup.py | Feb 11 2021 | ||||
35b0a5fef28a | tlemaire | added stimProfile and plot methods to TimeProtocol class | Feb 11 2021 | ||||
5f4e38528e1a | tlemaire | new bls lookups | Nov 2 2020 | ||||
9b2552960a06 | tlemaire | added getPulseTrainProtocol function | Sep 30 2020 | ||||
405697583757 | tlemaire | adjusted benchmark classes | Sep 30 2020 | ||||
b89adb5fba58 | tlemaire | added SonicBenchmark.phaseplotQnorm method | Sep 25 2020 | ||||
3e45a355b863 | tlemaire | removed OldDriveDivergenceMap, added GammaDivergenceMap | Sep 25 2020 | ||||
6b0629b0479c | tlemaire | resolved numerical errors on multicomp benchmark (npc = 100, atol = 1e-10) | Sep 25 2020 | ||||
6aa3e623b782 | tlemaire | added multicomp module | Sep 24 2020 | ||||
190d52832d89 | tlemaire | added multicomp_benchmark module (cleaned-up version). | Sep 24 2020 | ||||
3f27342d2675 | tlemaire | corrected gamma map | Sep 24 2020 | ||||
fe5b0a532e32 | tlemaire | added plot_Zprofiles.py script | Sep 23 2020 | ||||
bb9f2c79c74a | tlemaire | latest changes for morphoSONIC paper | Sep 15 2020 | ||||
e54883c44689 | tlemaire | added Lookup.reduce method to compute bls gamma_lkp on-the-fly (removed… | Aug 8 2020 | ||||
a3951dd16d9c | tlemaire | added postpro.filtfilt function and plot_Cm_filtering script | Aug 8 2020 | ||||
0526b07ebff9 | tlemaire | added mirrorProp and mirrorAxis functions to pltutils. | Aug 6 2020 | ||||
aa8497513a7a | tlemaire | corrected error in bls.logRelGap. Re-computed Cm_lkp | Aug 5 2020 | ||||
e57b064d8f70 | tlemaire | simplified bls.capacitance expresion | Aug 5 2020 | ||||
bf832e749cbd | tlemaire | added FHnode fs lookup at 36 celsius. | Aug 5 2020 | ||||
ed71c4613b28 | tlemaire | replaced nbls NEURONS_LOOKUP_DIR by a more general LOOKUP_DIR defined in utils | Aug 4 2020 | ||||
d5c62320c0e3 | tlemaire | added expandRange docstring | Aug 4 2020 | ||||
52e16ec74047 | tlemaire | added nmin parameter to PeriodicSolver.solve and BilayerSonophore.simCycles. | Aug 3 2020 | ||||
1c0831f723b0 | tlemaire | added tau_pas plotting to plotGatingKinetics | Jul 24 2020 | ||||
ac56c3baa94e | tlemaire | cleaned up BilayerSonophore.getPltVars | Jul 23 2020 | ||||
aaeaaeac3732 | tlemaire | removed call to unstable iax in pltvars['iax'] definition | Jul 22 2020 | ||||
0d4af61c20f7 | tlemaire | corrected PointNeuron dQdt method (now calculating charge derviative by finite… | Jul 22 2020 | ||||
d4364da996c8 | tlemaire | added symmetric colormaps and corrected ComparativePlot cbar levels for int… | Jul 21 2020 | ||||
fd4b6531e872 | tlemaire | specified logger handler stream to sys.stdout to avoid red background in… | Jul 21 2020 | ||||
42a3be29b47b | tlemaire | introduced default celsius (36°C) as a PointNeuron property shared by all… | Jul 21 2020 |
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