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History Graph
Commit | Author | Details | Committed | ||||
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4e922dc3531c | tlemaire | corrected scaling factor in actmap.addThresholdCurve | Apr 29 2020 | ||||
524072855745 | tlemaire | defined Thresholder class for a clearer threshold search implementation. | Apr 29 2020 | ||||
1dd1b969d0e2 | tlemaire | added RS 10Hz titrations. | Apr 29 2020 | ||||
efb7e6effc92 | tlemaire | corrected queue error in actmap.addTresholdCurve | Apr 29 2020 | ||||
0a9b43830b05 | tlemaire | corrected DC scaling in actmap.addThresholdCurve | Apr 29 2020 | ||||
d4087b3210f3 | tlemaire | added mpi feature to actmap threshold curve. | Apr 29 2020 | ||||
81fe27f05196 | tlemaire | changed bls.inputs['a'] (factor 0, unit m). | Apr 29 2020 | ||||
fcb5a387a33e | tlemaire | added input-ouput match pre-check in LogBatch.run method to avoid unnecessary… | Apr 28 2020 | ||||
2eb3a3768e1e | tlemaire | modified BurstProtocol default BRF such that BRI is twice burst time. | Apr 26 2020 | ||||
fab05bc88fea | tlemaire | corrected simobj.check methods (incorrect paramStr call). added BRF pre-check… | Apr 26 2020 | ||||
20183f45302e | tlemaire | added baseline_modulation example script | Apr 24 2020 | ||||
6dedc53ccbc8 | tlemaire | added optional tstart argument to PusledProtocol classes. corrected… | Apr 24 2020 | ||||
5b268a756bc5 | tlemaire | added TCtweak70 and TCtweak50 cases. | Apr 23 2020 | ||||
a6e6abff99bc | tlemaire | added TC2 class | Apr 23 2020 | ||||
93d5100bbbce | tlemaire | introduced lambda function for test.execute calls | Apr 22 2020 | ||||
9342c4bfcbda | tlemaire | additional bls lookups | Apr 22 2020 | ||||
7f1709df1d92 | tlemaire | defined friendlyLogspace function | Apr 21 2020 | ||||
67531a20cdce | tlemaire | placed StimObject class in a separate stimobj module. added boltons dependency… | Apr 21 2020 | ||||
2a0fec5672f0 | tlemaire | added TC lookup 80 nm 590 kHz | Apr 19 2020 | ||||
b7a48187478a | tlemaire | added few utils functions | Apr 19 2020 | ||||
159f140dcfb0 | tlemaire | added BalancedPulsedProtocol class. | Apr 19 2020 | ||||
7fdbe8544e52 | tlemaire | added 48 nm TC lookups | Apr 19 2020 | ||||
108548aa8cc8 | tlemaire | added max_nsamples parameter to effective solver to avoid memory allocation… | Apr 18 2020 | ||||
a72a071b87d0 | tlemaire | added more TC lookups. | Apr 18 2020 | ||||
72c8577885a8 | tlemaire | corrected units discrepancy in actmap.py | Apr 18 2020 | ||||
a3ca81f69d0a | tlemaire | corrected TimSeries.getStimPulses function (no patches for zero states). | Apr 18 2020 | ||||
83d7d8df16fa | tlemaire | updated README | Apr 18 2020 | ||||
00f6aa560a10 | tlemaire | defined protocols copy methods. | Apr 18 2020 | ||||
0d1777407add | tlemaire | corrected drives and protocols inputs. | Apr 18 2020 | ||||
241946f34fa2 | tlemaire | simplified drives and protocols | Apr 17 2020 | ||||
5e4003f785f9 | tlemaire | updated inputs precision in protocols | Apr 17 2020 | ||||
b80a24a22518 | tlemaire | updated README | Apr 17 2020 | ||||
5fe7fba7ad8c | tlemaire | cleand-up run_astim.py | Apr 17 2020 | ||||
420b1c0ceb3e | tlemaire | added 64nm 590 kHz fs-dependent TC lookup | Apr 17 2020 | ||||
6895a19a147f | tlemaire | implemented simQueueBurst method in pneuron and nbls classes. | Apr 17 2020 | ||||
e3ca275ebe0f | tlemaire | harmonized repr, desc and filecodes methods across protocols. | Apr 17 2020 | ||||
e62423f9469d | tlemaire | added update interval argument to HybridSolve.solve method. | Apr 17 2020 | ||||
e775528e1afc | tlemaire | cleaned-up find_tpeaks function | Apr 17 2020 | ||||
447a9236fa20 | tlemaire | corrected error in computeFRProfile when no spikes are detected. | Apr 17 2020 | ||||
69892d75c503 | tlemaire | improved solvers docstrings and clarified their use in model classes. | Apr 16 2020 | ||||
81c3d55cddff | tlemaire | added 2 MHz 32nm TC lookup. | Apr 15 2020 | ||||
d03caf415e89 | tlemaire | removed ambiguity around initialConditions methods to allow correct lookups… | Apr 15 2020 | ||||
b77cd9e4eb12 | tlemaire | implemented better solvers (now inside solvers module), including an… | Apr 15 2020 | ||||
7ae0b7961ae4 | tlemaire | added TC fs lookup at 1 MHz. | Apr 13 2020 | ||||
b44cc93c9915 | tlemaire | replaced "Ascale" parsing options by "yscale" for more clarity. | Apr 13 2020 | ||||
f8511250c9b8 | tlemaire | corrected LogBatch class to enable correct use with mpi. | Apr 13 2020 | ||||
10270ea94712 | tlemaire | added better fs handling in actmap | Apr 13 2020 | ||||
a8ffc4cf6311 | tlemaire | removed useless error instance catch in utils | Apr 10 2020 | ||||
077023563760 | tlemaire | added example actmap script | Apr 9 2020 | ||||
4907be82d296 | tlemaire | changed default actmap tstim from 1s to 200 ms | Apr 9 2020 | ||||
3af9c9df32cc | tlemaire | added multiprocessing functionality to LogBatch class. | Apr 9 2020 | ||||
18480eb7bebc | tlemaire | corrected ActMap class (now inheriting from LogBatch). | Apr 9 2020 | ||||
63ef9868bbd2 | tlemaire | added TimeProtocol.stimEvents method (used in NEURON simulations). | Apr 5 2020 | ||||
06f8250793a6 | tlemaire | added eventsON and eventsOFF methods to Protocol classes. | Apr 5 2020 | ||||
afdde67646ea | tlemaire | moved example scripts to examples folder and defined README.mdpp markdown… | Apr 4 2020 | ||||
cc5348bc40ca | tlemaire | added __eq__ methods to pneuron and nbls classes | Apr 3 2020 | ||||
9239911c1f35 | tlemaire | added ASTIM_REL_CONV_THR to constants file. | Mar 31 2020 | ||||
9dcd3884ae33 | tlemaire | added TC fs lookup. | Mar 30 2020 | ||||
4e96a816343e | tlemaire | added MRG fs lookup. | Mar 30 2020 | ||||
8a68be82c2d8 | tlemaire | added MRG lookup. | Mar 27 2020 | ||||
8f0bbde630a7 | tlemaire | renamed fibers point-neuron models for better interpretability. completed fiber… | Mar 27 2020 | ||||
a43249c6ecf1 | tlemaire | tested MRG lookups generation | Mar 26 2020 | ||||
a4eafd9f8059 | tlemaire | corrected typo in SweeneyNode description. | Mar 26 2020 | ||||
cf163f8c94cb | tlemaire | added addExcitationInset to pltutils | Mar 24 2020 | ||||
678f3f5e229d | tlemaire | added getLogStartPoint to utils | Mar 23 2020 | ||||
84694f9507f6 | tlemaire | added x axis sharing in GroupedTimeSeries | Mar 21 2020 | ||||
066e8e416305 | tlemaire | added polyfit amd extrapolate capabilities to Lookup class. | Mar 19 2020 | ||||
8f4b9911c0d3 | tlemaire | Merge branch 'master' of https://c4science.ch/diffusion/4670/pysonic | Feb 28 2020 | ||||
c8a9ea2beb92 | tlemaire | added extra functionalities to Lookup class. continued fiber nodes notebook. | Feb 28 2020 | ||||
7d61ef15bd3b | vicari | Merge solved | Feb 28 2020 | ||||
be6c868e4e5f | vicari | Correction in drives | Feb 28 2020 | ||||
edc36b1686d6 | tlemaire | added fiber ndoes analysis notebook | Feb 27 2020 | ||||
a46f7227e040 | tlemaire | added better handling of ybounds in timeseries. added MRG neuron class. | Feb 27 2020 | ||||
165caa8bf488 | tlemaire | moved getMeta to utils | Feb 20 2020 | ||||
7f8a3be5ceb4 | tlemaire | changed meta property of model classes to return solely model information. | Feb 20 2020 | ||||
b7d520b9ed42 | tlemaire | added LogBatch class | Feb 18 2020 | ||||
b68fc5d800ef | tlemaire | added isPickable function. corrected install_requires list in setup file. | Feb 18 2020 | ||||
683ec602313d | tlemaire | added gaussian function to utils. | Feb 14 2020 | ||||
31cc2d15993a | tlemaire | updated README (added instructions for git-lfs install) | Feb 14 2020 | ||||
68961385d17e | tlemaire | added copy method to all model classes. added TI US notebook. updated… | Feb 11 2020 | ||||
b62507055396 | tlemaire | adapted simAndSave function to work also with source-based titration cases. | Feb 5 2020 | ||||
478c17a7e098 | tlemaire | changed erroneous calls to parseAmp to parseAmplitude in parsers module | Feb 5 2020 | ||||
96d3c580ee81 | tlemaire | replaced erroneous "return NotImplementedError" statements by "raise… | Feb 5 2020 | ||||
8907f78b742a | tlemaire | correctd mismatch in ElectricDrive | Feb 5 2020 | ||||
892f924d6e9e | tlemaire | renamed ElectricDrive A to I | Feb 5 2020 | ||||
31ef6228207a | tlemaire | introduced properties in classes of drives and protocols modules. | Feb 5 2020 | ||||
073e28b388f6 | tlemaire | added xkey property to XDrive class and Arange property to pneuron and nbls… | Feb 3 2020 | ||||
27d8aafffa88 | tlemaire | Created Drive objects inheritance scheme (now used in all model classes). | Feb 3 2020 | ||||
dba63f835a31 | tlemaire | corrected docstring errors in pneuron Cm0 and Qm0 | Feb 3 2020 | ||||
a42d9f542bed | tlemaire | added FH fs lookups | Feb 3 2020 | ||||
062e541857dc | tlemaire | added lookups files in separate lookups folder using LFS. | Feb 3 2020 | ||||
ed7412335d9f | tlemaire | Initialized LFS. deleted lookup files from neuron folder. | Feb 3 2020 | ||||
9d0666784d2d | tlemaire | Created AcousticSource class to be used for US simulations. | Feb 3 2020 | ||||
eec847e65a7a | tlemaire | added sundt fs lookups. adapted RS fs lookups. adapted nbls.getLookup2D method… | Jan 26 2020 | ||||
6846298198d4 | tlemaire | added interp_method Lookup attribute to enable choice of lookup interpolation… | Jan 26 2020 | ||||
c995e8999df7 | tlemaire | Modified Lookup class (new properties, corrected methods). | Jan 26 2020 | ||||
38dc94d61fe7 | tlemaire | added DQ_LOOKUP constant (used in run_lookups.py) | Jan 26 2020 | ||||
1919e3105ee4 | tlemaire | added toDict, toJson, fromDict and fromJson methods to Lookup class. | Jan 23 2020 | ||||
f4ea3f48765e | vicari | Merge completed | Jan 22 2020 | ||||
e4f4732ffbab | vicari | Extra entry in bls lookup | Jan 22 2020 |
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