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History Graph
History Graph
Commit | Author | Details | Committed | ||||
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aa3b06ccb8aa | tlemaire | added new passive lookups at 20kHz and 4MHz | May 28 2021 | ||||
da9013ba10c1 | tlemaire | corrected indent error in run_lookups | May 28 2021 | ||||
3dd0e7ca4b5c | tlemaire | added pneuron.is_passive property and getDefaultPassiveNeuron function | May 28 2021 | ||||
b608770eae52 | tlemaire | adapted parser for passive lookups | May 28 2021 | ||||
47f7640b7bcb | tlemaire | added factor to Qnorm pltvar. | May 27 2021 | ||||
bf6c2c1e96e5 | tlemaire | untracked sublime-project file | May 27 2021 | ||||
143fbd37ca59 | tlemaire | added special case handling to find lookups name | May 27 2021 | ||||
417a3bd45505 | tlemaire | replaced computeDiffAreaUnderCurve by computeMeanNormDifference (more robust… | May 26 2021 | ||||
87ed4cd909be | tlemaire | corrected nan values handling in XYMap. | May 26 2021 | ||||
fde48404e155 | tlemaire | improved FiberBenchmark | May 26 2021 | ||||
02b5fdf9949f | tlemaire | added new divmaps module. | May 26 2021 | ||||
a4d16de1fb6a | tlemaire | added divergence computation methods to benchmarks | May 25 2021 | ||||
c187b85f3573 | tlemaire | improved naming, access and iterating of DriveArray objects. | May 25 2021 | ||||
b4ccaf49772d | tlemaire | modified xscale in benchmark 2D plot | May 20 2021 | ||||
41fde2c39385 | tlemaire | modified coupled_nbls.simAndSave to just simulate if no output directory is… | May 19 2021 | ||||
f4282fb16d90 | tlemaire | added plot utility functions | May 19 2021 | ||||
35b4216f3b21 | tlemaire | added option to initialize passive neuron from name code. added initFromMeta… | May 19 2021 | ||||
40ac2cbf792f | tlemaire | added workaround solution for passive generic lookup name | May 19 2021 | ||||
06fa67d560c2 | tlemaire | added resample and interpolate methods to spatiallyextendedtimeseries class | May 18 2021 | ||||
3d60eae04053 | tlemaire | added dump and dumpOutputsOtherThan methods to TimeSeries classes | May 18 2021 | ||||
66afa784ef55 | tlemaire | added half-cycle offset and interpolation in timeseries cycle averaging | May 17 2021 | ||||
a855f3b52095 | tlemaire | fixed error in run_lookups (inconsistent redimensioning for test case) | May 17 2021 | ||||
575ad8b758ee | tlemaire | clarified terms in gamma functions | May 17 2021 | ||||
9b83a80b55f5 | tlemaire | started implementing gamma evaluation method | May 17 2021 | ||||
23adeab812fd | tlemaire | started working on coupled_nbls module | May 15 2021 | ||||
6aadfe75ac22 | tlemaire | started working on coupled_nbls module | May 14 2021 | ||||
4ca2ae140d75 | tlemaire | added test_Qovertones.py test script | May 11 2021 | ||||
5a9cf900fc2b | tlemaire | added context to README | Apr 13 2021 | ||||
5159d5ca1d87 | tlemaire | improved logging in nbls.computeEffVars | Mar 26 2021 | ||||
f23057d86a6e | tlemaire | improved error logging in bls.balancedefQS. | Mar 26 2021 | ||||
b4233b34e678 | tlemaire | improved lookup naming system (and renamed all lookups accordingly). | Mar 23 2021 | ||||
7d732f9d2c25 | tlemaire | adapted nbls.computeEffVars method to accomodate for Fourier Fourier overtones… | Mar 23 2021 | ||||
e7842427f677 | tlemaire | added array-typed charge input (i.e. US-periodic profile) option to… | Mar 23 2021 | ||||
215b15082b72 | tlemaire | small corrections in demo notebook | Mar 18 2021 | ||||
1b7cf6045963 | tlemaire | updated setup file. corrected some imports in notebooks (AcousticSource ->… | Mar 16 2021 | ||||
cbeb67523b66 | tlemaire | corrected Cm lkp extension | Mar 5 2021 | ||||
0df71d46a8b6 | tlemaire | added emphasis on git-lfs requirement in REAMDE. | Mar 3 2021 | ||||
28b9ed25d674 | tlemaire | added transition handling in computeTimeStep. | Mar 2 2021 | ||||
573f1807c8e3 | tlemaire | updated pandas requirements in setup.py | Feb 11 2021 | ||||
35b0a5fef28a | tlemaire | added stimProfile and plot methods to TimeProtocol class | Feb 11 2021 | ||||
5f4e38528e1a | tlemaire | new bls lookups | Nov 2 2020 | ||||
9b2552960a06 | tlemaire | added getPulseTrainProtocol function | Sep 30 2020 | ||||
405697583757 | tlemaire | adjusted benchmark classes | Sep 30 2020 | ||||
b89adb5fba58 | tlemaire | added SonicBenchmark.phaseplotQnorm method | Sep 25 2020 | ||||
3e45a355b863 | tlemaire | removed OldDriveDivergenceMap, added GammaDivergenceMap | Sep 25 2020 | ||||
6b0629b0479c | tlemaire | resolved numerical errors on multicomp benchmark (npc = 100, atol = 1e-10) | Sep 25 2020 | ||||
6aa3e623b782 | tlemaire | added multicomp module | Sep 24 2020 | ||||
190d52832d89 | tlemaire | added multicomp_benchmark module (cleaned-up version). | Sep 24 2020 | ||||
3f27342d2675 | tlemaire | corrected gamma map | Sep 24 2020 | ||||
fe5b0a532e32 | tlemaire | added plot_Zprofiles.py script | Sep 23 2020 | ||||
bb9f2c79c74a | tlemaire | latest changes for morphoSONIC paper | Sep 15 2020 | ||||
e54883c44689 | tlemaire | added Lookup.reduce method to compute bls gamma_lkp on-the-fly (removed… | Aug 8 2020 | ||||
a3951dd16d9c | tlemaire | added postpro.filtfilt function and plot_Cm_filtering script | Aug 8 2020 | ||||
0526b07ebff9 | tlemaire | added mirrorProp and mirrorAxis functions to pltutils. | Aug 6 2020 | ||||
aa8497513a7a | tlemaire | corrected error in bls.logRelGap. Re-computed Cm_lkp | Aug 5 2020 | ||||
e57b064d8f70 | tlemaire | simplified bls.capacitance expresion | Aug 5 2020 | ||||
bf832e749cbd | tlemaire | added FHnode fs lookup at 36 celsius. | Aug 5 2020 | ||||
ed71c4613b28 | tlemaire | replaced nbls NEURONS_LOOKUP_DIR by a more general LOOKUP_DIR defined in utils | Aug 4 2020 | ||||
d5c62320c0e3 | tlemaire | added expandRange docstring | Aug 4 2020 | ||||
52e16ec74047 | tlemaire | added nmin parameter to PeriodicSolver.solve and BilayerSonophore.simCycles. | Aug 3 2020 | ||||
1c0831f723b0 | tlemaire | added tau_pas plotting to plotGatingKinetics | Jul 24 2020 | ||||
ac56c3baa94e | tlemaire | cleaned up BilayerSonophore.getPltVars | Jul 23 2020 | ||||
aaeaaeac3732 | tlemaire | removed call to unstable iax in pltvars['iax'] definition | Jul 22 2020 | ||||
0d4af61c20f7 | tlemaire | corrected PointNeuron dQdt method (now calculating charge derviative by finite… | Jul 22 2020 | ||||
d4364da996c8 | tlemaire | added symmetric colormaps and corrected ComparativePlot cbar levels for int… | Jul 21 2020 | ||||
fd4b6531e872 | tlemaire | specified logger handler stream to sys.stdout to avoid red background in… | Jul 21 2020 | ||||
42a3be29b47b | tlemaire | introduced default celsius (36°C) as a PointNeuron property shared by all… | Jul 21 2020 | ||||
133be2f739dd | tlemaire | added celsius parameter (36.0) to cortical and thalamic neurons. | Jul 21 2020 | ||||
4884f5695b3e | tlemaire | added HH point neuron | Jul 21 2020 | ||||
de400ab21db3 | tlemaire | corrected gaussian formula so that sigma matches definition of standard… | Jul 20 2020 | ||||
c9894bdbd61c | tlemaire | removed SilentMRGNode class (now generated on-the-fly in analysis notebook) | Jul 15 2020 | ||||
a8ba89d095f5 | tlemaire | implemented passiveNeuron wrapper function to generate PassiveNeuron class… | Jul 15 2020 | ||||
3998f71a5a6f | tlemaire | added LogBatch getSerlializedOutput and getEntryOutput methods. | Jul 15 2020 | ||||
095a41517e86 | tlemaire | added pneuron.tau_pas property | Jul 3 2020 | ||||
66f49d8e6545 | tlemaire | added log scale option for tau axis in plotGatingStates | Jun 26 2020 | ||||
4b2fc8c0eea5 | tlemaire | added pairwise utils function. added GroupedTimeSeries.shareX static method. | Jun 24 2020 | ||||
64ec46ae1392 | tlemaire | corrected Lookup and TimeSeries division operators. | Jun 4 2020 | ||||
bebce73d9405 | tlemaire | updated MANIFEST file. | Jun 3 2020 | ||||
ef08cb208ad1 | tlemaire | updated README. | May 18 2020 | ||||
bbb3a4445235 | tlemaire | added strictbounds plotting options | May 7 2020 | ||||
0c7bff925bd5 | tlemaire | corrected index offset error in GenericPlot.addCmap | May 5 2020 | ||||
2c0253a46427 | tlemaire | added extractCommonPrefix utils function. | May 4 2020 | ||||
9b03fd5152c2 | tlemaire | corrected DrivenNeuronalBilayerSonophore.inputs | May 2 2020 | ||||
e1f537dcc076 | tlemaire | corrected error in solve_ivp call. | May 2 2020 | ||||
db1a0c16e84b | tlemaire | added actmap NaN data post-processing to prevent numpy warning when using log z… | May 2 2020 | ||||
430d7c8131f0 | tlemaire | new astim titrations for figure 8 | May 2 2020 | ||||
6d2bc897725d | tlemaire | Merge branch 'master' of https://c4science.ch/diffusion/4670/pysonic | May 1 2020 | ||||
c8cdcf5deefc | tlemaire | added new titrations | May 1 2020 | ||||
bd7a6ec5a477 | tlemaire | corrected ComparativePlot and CompTimeSeries to enable taking generators as… | May 1 2020 | ||||
5742df202a16 | tlemaire | new figure 7 titrations for high PRF low DC | May 1 2020 | ||||
fa9c541d7842 | tlemaire | applied correction to ODESolver.getNsamples to make sure there are at least 2… | May 1 2020 | ||||
28d338972b7c | tlemaire | new figure 7 titrations | May 1 2020 | ||||
74c7618b792a | tlemaire | added new astim titrations | Apr 30 2020 | ||||
835803fa8d6b | tlemaire | added progress bar logging to nbls.simFull at INFO level. | Apr 30 2020 | ||||
4e922dc3531c | tlemaire | corrected scaling factor in actmap.addThresholdCurve | Apr 29 2020 | ||||
524072855745 | tlemaire | defined Thresholder class for a clearer threshold search implementation. | Apr 29 2020 | ||||
1dd1b969d0e2 | tlemaire | added RS 10Hz titrations. | Apr 29 2020 | ||||
efb7e6effc92 | tlemaire | corrected queue error in actmap.addTresholdCurve | Apr 29 2020 | ||||
0a9b43830b05 | tlemaire | corrected DC scaling in actmap.addThresholdCurve | Apr 29 2020 | ||||
d4087b3210f3 | tlemaire | added mpi feature to actmap threshold curve. | Apr 29 2020 |
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