Diffusion PySONIC (old) (master) History

R4670/PointNICE/plt
master1c8f0234e7e70aca1c444cc…

Mar 19 2018

changes to plotComp function allowing to customize linestyles, colors and…
1c8f0234e7e7
·tlemaire on Mar 19 2018, 17:36.

Mar 15 2018

introduced custom defined InputError exceptions (instead of assert statements)…
4ffaa73494ea
·tlemaire on Mar 15 2018, 17:06.

Mar 13 2018

tested and validated plotting with pandas dataframes.
41e27b5ece2e
·tlemaire on Mar 13 2018, 12:37.
replaced DF by DC, and added pandas dataframes to store and retrieve simulation…
1edd575f6465
·Theo Lemaire on Mar 13 2018, 01:14.

Mar 12 2018

replaced channels by neurons
edd5594d9646
·Theo Lemaire on Mar 12 2018, 20:01.

Jan 9 2018

corrected LeechP implementation using dynamic Nernst potentials for Sodium and…
c59a8267c97e
·tlemaire on Jan 9 2018, 14:53.

Dec 12 2017

Lots of corrections and improvements to the LeechP model implementation. E-STIM…
33ee63af70aa
·tlemaire on Dec 12 2017, 15:16.

Dec 1 2017

added LeechPressure to channels init. added leechP variables to pltvars. tested…
094fd25223f4
·tlemaire on Dec 1 2017, 09:01.

Nov 27 2017

validated effective method for LeechT neuron, added that neuron to test_values.
1bb50e8f0025
·tlemaire on Nov 27 2017, 13:18.

Nov 22 2017

corrected code for LeechT neuron, and validated it on electrical stimuli
c9dad3d35684
·tlemaire on Nov 22 2017, 14:01.

Sep 12 2017

added biomech and biophys parameters directly as BilayerSonophore class…
6be1756dda64
·tlemaire on Sep 12 2017, 14:46.

Sep 10 2017

added input pltvars checking to plot functions
c67c8c39a93b
·tlemaire on Sep 10 2017, 19:07.
replaced print statements with logging statements in internal modules
43647159e654
·tlemaire on Sep 10 2017, 17:16.

Sep 6 2017

replaced neurons object lists by neurons name list in batch functions input
14d95d317eeb
·tlemaire on Sep 6 2017, 16:14.

Sep 2 2017

added standardized plotEffCoeffs function to pltutils
b0a231289d69
·tlemaire on Sep 2 2017, 17:39.

Sep 1 2017

replaced eval statements from plotGatingKinetics & plotRateConstants by getattr…
08165e6a06f3
·tlemaire on Sep 1 2017, 21:30.
added standardized plotRateConstants method
4c66e98d971e
·tlemaire on Sep 1 2017, 21:18.
added plotGatingKinetics method to plot the steady-sate and time constant…
3f5921510ae9
·tlemaire on Sep 1 2017, 20:51.
added option to specify labels in plotComp
e2ff032a6759
·tlemaire on Sep 1 2017, 15:55.

Aug 29 2017

added getNeuronsDict function to utils
c5cad185b222
·tlemaire on Aug 29 2017, 15:38.

Aug 25 2017

included default plotting scheme inside neuron classes definition. Modified…
06127af4b669
·tlemaire on Aug 25 2017, 18:28.
adapted plotComp to deal with pulsed ESTIM outputs and MECH outputs. corrected…
c30d03edb7cc
·tlemaire on Aug 25 2017, 17:54.
implemented runMechBatch function. adapted plotBatch function to deal with MECH…
0a89dde7f847
·tlemaire on Aug 25 2017, 17:20.
added titrateEStim and titrateEStimBatch functions
c9053e689690
·tlemaire on Aug 25 2017, 14:59.
Added pulsed stimuli handling to SolverElec. Implemented moved titration…
3c218a52595b
·tlemaire on Aug 25 2017, 13:06.

Aug 24 2017

added smart labels to plotComp, smart title to plotBatch
788e6d1c95b2
·tlemaire on Aug 24 2017, 18:48.
added LeechT variables to workflow
b139db9e82d1
·tlemaire on Aug 24 2017, 18:17.
debugging of plot functions
3e6f232a2a2e
·tlemaire on Aug 24 2017, 17:59.
introduced standardized workflow for both E-STIM and A-STIM simulations and…
2c7de2047898
·tlemaire on Aug 24 2017, 17:49.

Aug 23 2017

created plotting module inside package, with plotComp and plotBatch functions
af10a48546b7
·tlemaire on Aug 23 2017, 15:45.