Diffusion PySONIC (old) (master) History

simutils.py
master5049e821acd8eeed03e39b3…

Mar 16 2018

Added user input to decide whether to continue batch after assertion error or…
5049e821acd8
·tlemaire on Mar 16 2018, 13:30.
renamed BilayerSonophore.runMech to BilayerSonophore.run, and runMechSingle to…
5b8f09fbd295
·tlemaire on Mar 16 2018, 12:06.

Mar 15 2018

added runMechSingle to simutils and MECH_run script
50e85131e3d9
·tlemaire on Mar 15 2018, 19:23.
introduced custom defined InputError exceptions (instead of assert statements)…
4ffaa73494ea
·tlemaire on Mar 15 2018, 17:06.

Mar 14 2018

general optimization of integration methods (elec, mech and US classic) using…
b65f7bad637c
·tlemaire on Mar 14 2018, 19:30.

Mar 13 2018

changed "ch_mech" by "neuron"
acab28778569
·tlemaire on Mar 13 2018, 14:33.
added neuron name to meta dictionary for ESTIM and ASTIM simulations
0c7107d859aa
·tlemaire on Mar 13 2018, 12:49.
added tcomp to "meta" dictionary.
d2ee8d2274d4
·tlemaire on Mar 13 2018, 12:42.
replaced DF by DC, and added pandas dataframes to store and retrieve simulation…
1edd575f6465
·Theo Lemaire on Mar 13 2018, 01:14.

Mar 7 2018

updated README and LICENCSE files. added extra BLS lookups. corrected titration…
63c842041ef8
·tlemaire on Mar 7 2018, 15:28.

Feb 28 2018

updated titration methods and generated LeechP lookups
89d20f6d2cb6
·tlemaire on Feb 28 2018, 16:53.

Jan 16 2018

corrected computation of firing rate in detectSpikes function
7497a2150a6b
·tlemaire on Jan 16 2018, 20:07.

Nov 29 2017

Added sonophore diameter to ASTIM files naming, and changed DF to 2 decimals…
ae51b3bafaec
·tlemaire on Nov 29 2017, 14:59.

Nov 22 2017

corrected code for LeechT neuron, and validated it on electrical stimuli
c9dad3d35684
·tlemaire on Nov 22 2017, 14:01.

Sep 12 2017

added biomech and biophys parameters directly as BilayerSonophore class…
6be1756dda64
·tlemaire on Sep 12 2017, 14:46.

Sep 10 2017

improved error handling
6cd8d175ad7b
·tlemaire on Sep 10 2017, 17:53.

Sep 6 2017

replaced neurons object lists by neurons name list in batch functions input
14d95d317eeb
·tlemaire on Sep 6 2017, 16:14.
introduced default arguments in batch functions for bls_params and geom
151337217cab
·tlemaire on Sep 6 2017, 15:03.
separated checkBatchLog function into setBatchDir and checkBatchLog functions
63f20548155d
·tlemaire on Sep 6 2017, 13:42.

Sep 4 2017

added runEStim and runAStim functions. added locker to xlslog
8680bc7dccaf
·tlemaire on Sep 4 2017, 17:00.

Sep 3 2017

updated test_values
f51d67fdf64a
·tlemaire on Sep 3 2017, 17:23.

Sep 1 2017

added option to specify labels in plotComp
e2ff032a6759
·tlemaire on Sep 1 2017, 15:55.

Aug 25 2017

adapted plotComp to deal with pulsed ESTIM outputs and MECH outputs. corrected…
c30d03edb7cc
·tlemaire on Aug 25 2017, 17:54.
implemented runMechBatch function. adapted plotBatch function to deal with MECH…
0a89dde7f847
·tlemaire on Aug 25 2017, 17:20.
added titrateEStim and titrateEStimBatch functions
c9053e689690
·tlemaire on Aug 25 2017, 14:59.
Added pulsed stimuli handling to SolverElec. Implemented moved titration…
3c218a52595b
·tlemaire on Aug 25 2017, 13:06.

Aug 24 2017

introduced standardized workflow for both E-STIM and A-STIM simulations and…
2c7de2047898
·tlemaire on Aug 24 2017, 17:49.

Aug 23 2017

moved some utils functions into simutils & pltutils modules
4f9a8fd2aed4
·tlemaire on Aug 23 2017, 16:28.
created plotting module inside package, with plotComp and plotBatch functions
af10a48546b7
·tlemaire on Aug 23 2017, 15:45.

R4670/PointNICE/solvers/simutils.pymaster5049e821acd8eeed03e39b3…

Mar 16 2018

Mar 15 2018

Mar 14 2018

Mar 13 2018

Mar 7 2018

Feb 28 2018

Jan 16 2018

Nov 29 2017

Nov 22 2017

Sep 12 2017

Sep 10 2017

Sep 6 2017

Sep 4 2017

Sep 3 2017

Sep 1 2017

Aug 25 2017

Aug 24 2017

Aug 23 2017

R4670/PointNICE/solvers/simutils.py
master5049e821acd8eeed03e39b3…