Diffusion PySONIC (old) (master) History

R4670/notebooks
master7368aa8d62606e57b6ffdbd…

Mar 18 2021

small corrections in demo notebook
215b15082b72
·tlemaire on Mar 18 2021, 15:01.

Mar 16 2021

updated setup file. corrected some imports in notebooks (AcousticSource ->…
1b7cf6045963
·tlemaire on Mar 16 2021, 18:32.

Mar 2 2021

added transition handling in computeTimeStep.
28b9ed25d674
·tlemaire on Mar 2 2021, 15:03.

Apr 29 2020

defined Thresholder class for a clearer threshold search implementation.
524072855745
·tlemaire on Apr 29 2020, 22:52.

Mar 27 2020

renamed fibers point-neuron models for better interpretability. completed fiber…
8f0bbde630a7
·tlemaire on Mar 27 2020, 20:37.

Feb 28 2020

added extra functionalities to Lookup class. continued fiber nodes notebook.
c8a9ea2beb92
·tlemaire on Feb 28 2020, 17:05.

Feb 27 2020

added fiber ndoes analysis notebook
edc36b1686d6
·tlemaire on Feb 27 2020, 23:06.

Feb 11 2020

added copy method to all model classes. added TI US notebook. updated…
68961385d17e
·tlemaire on Feb 11 2020, 07:55.

Feb 3 2020

Created AcousticSource class to be used for US simulations.
9d0666784d2d
·tlemaire on Feb 3 2020, 14:26.

Dec 10 2019

updated STN neuron notebook with correct model parameters and enabled…
5c9777d249d7
·tlemaire on Dec 10 2019, 17:14.

Dec 6 2019

re-ran and completed STN notebook
d0b57c5e137d
·tlemaire on Dec 6 2019, 17:43.

Dec 2 2019

added threshold module with isolated threshold function (now used for all…
f8107574d0a8
·tlemaire on Dec 2 2019, 20:07.

Sep 4 2019

updated notebooks
fdf554e5e6ab
·tlemaire on Sep 4 2019, 11:10.

Aug 22 2019

harmonized peaks/spikes detection process across the package.
db880034dc26
·tlemaire on Aug 22 2019, 15:31.

Jul 1 2019

corrected TC neuron notebook
af0e4bd2fe9e
·tlemaire on Jul 1 2019, 16:50.
added option to provide simAndSave or simulate to batches. implemented addMeta…
d1a3fbaefd83
·tlemaire on Jul 1 2019, 16:46.

Jun 29 2019

adapted methods of all classes into classmethods and staticmethods when…
4937955d0214
·tlemaire on Jun 29 2019, 20:27.

Jun 13 2019

updated constants
b0f51febd195
·tlemaire on Jun 13 2019, 23:54.

Jun 12 2019

replaced "neuron" by "pneuron" for all PointNeuron instances
6e017b421f3e
·tlemaire on Jun 12 2019, 12:58.

May 31 2019

reformatted simulate methods of bls, pneuron and nbls classes to return output…
af6f9a02ed42
·Theo Lemaire on May 31 2019, 14:43.

Dec 4 2018

implemented notebook for validation of STN neuron (both ESTIM and ASTIM).
81adcb430e9f
·tlemaire on Dec 4 2018, 17:11.

Sep 25 2018

cleaned up deprecated folder. added notebook about balance quasi-steady…
8819bbb0e66f
·tlemaire on Sep 25 2018, 16:13.

Sep 24 2018

turned intermolecular pressure test script into notebook. removed Input error…
954e545fa6ac
·tlemaire on Sep 24 2018, 23:54.
moved relevant plot scripts to scripts folder. Turned analysis scripts into…
4d53b2a42b5e
·tlemaire on Sep 24 2018, 21:00.