Diffusion PySONIC (old) (master) History

R4670/sim/ASTIM_batch.py
mastercf2459c7182e028f54fa1d1…

Mar 15 2018

introduced custom defined InputError exceptions (instead of assert statements)…
4ffaa73494ea
·tlemaire on Mar 15 2018, 17:06.

Mar 13 2018

replaced DF by DC, and added pandas dataframes to store and retrieve simulation…
1edd575f6465
·Theo Lemaire on Mar 13 2018, 01:14.

Mar 8 2018

adapted batch files for LeechP
34958bd21f55
·tlemaire on Mar 8 2018, 10:02.

Mar 7 2018

updated README and LICENCSE files. added extra BLS lookups. corrected titration…
63c842041ef8
·tlemaire on Mar 7 2018, 15:28.

Feb 28 2018

updated titration methods and generated LeechP lookups
89d20f6d2cb6
·tlemaire on Feb 28 2018, 16:53.

Nov 29 2017

Added sonophore diameter to ASTIM files naming, and changed DF to 2 decimals…
ae51b3bafaec
·tlemaire on Nov 29 2017, 14:59.

Nov 27 2017

validated effective method for LeechT neuron, added that neuron to test_values.
1bb50e8f0025
·tlemaire on Nov 27 2017, 13:18.

Nov 24 2017

added LeechT lookup
f1fbc6e5b9bb
·tlemaire on Nov 24 2017, 12:32.

Nov 22 2017

corrected code for LeechT neuron, and validated it on electrical stimuli
c9dad3d35684
·tlemaire on Nov 22 2017, 14:01.

Sep 12 2017

debugged double printing issue of logging statements
6249b5298f4c
·tlemaire on Sep 12 2017, 18:56.
added biomech and biophys parameters directly as BilayerSonophore class…
6be1756dda64
·tlemaire on Sep 12 2017, 14:46.

Sep 10 2017

added color to logging statements
189a078bf8d2
·tlemaire on Sep 10 2017, 18:46.
improved error handling
6cd8d175ad7b
·tlemaire on Sep 10 2017, 17:53.

Sep 6 2017

replaced neurons object lists by neurons name list in batch functions input
14d95d317eeb
·tlemaire on Sep 6 2017, 16:14.
introduced default arguments in batch functions for bls_params and geom
151337217cab
·tlemaire on Sep 6 2017, 15:03.
separated checkBatchLog function into setBatchDir and checkBatchLog functions
63f20548155d
·tlemaire on Sep 6 2017, 13:42.

Sep 4 2017

added runEStim and runAStim functions. added locker to xlslog
8680bc7dccaf
·tlemaire on Sep 4 2017, 17:00.

Sep 1 2017

added temporary code to delay last pulse during PW stimuli in runEffective…
32c77b1353fa
·tlemaire on Sep 1 2017, 19:17.
added option to specify labels in plotComp
e2ff032a6759
·tlemaire on Sep 1 2017, 15:55.

Aug 30 2017

debugged and validated new runEffective method: interpolation datasets at…
cf8e6794b04c
·tlemaire on Aug 30 2017, 15:46.

Aug 28 2017

renamed LoadParams to load_BLS_params
c61b8e3492f6
·tlemaire on Aug 28 2017, 14:20.

Aug 25 2017

included default plotting scheme inside neuron classes definition. Modified…
06127af4b669
·tlemaire on Aug 25 2017, 18:28.
adapted plotComp to deal with pulsed ESTIM outputs and MECH outputs. corrected…
c30d03edb7cc
·tlemaire on Aug 25 2017, 17:54.
added titrateEStim and titrateEStimBatch functions
c9053e689690
·tlemaire on Aug 25 2017, 14:59.

Aug 24 2017

added smart labels to plotComp, smart title to plotBatch
788e6d1c95b2
·tlemaire on Aug 24 2017, 18:48.
added LeechT variables to workflow
b139db9e82d1
·tlemaire on Aug 24 2017, 18:17.
introduced standardized workflow for both E-STIM and A-STIM simulations and…
2c7de2047898
·tlemaire on Aug 24 2017, 17:49.