Diffusion singularity-pipeline (master)
Recent Commits
Recent Commits
| Commit | Author | Details | Committed | ||||
|---|---|---|---|---|---|---|---|
| 4eacf7dfa1dd | kashev | Fix condition on file existence | Jun 11 2018 | ||||
| 558e4362d0d7 | kashev | Fix old pipeline compatibility | Jun 11 2018 | ||||
| b67ca76df55d | kashev | Update setup.py and README for long description | Jun 11 2018 | ||||
| 92746607c07c | kashev | Lint README | Jun 11 2018 | ||||
| 569f396a754f | kashev | Report version with --version | Jun 11 2018 | ||||
| 0b58e2b51017 | kashev | Fix console entry point | Jun 11 2018 | ||||
| 8b4732690936 | kashev | Add basic README | Jun 11 2018 | ||||
| 8cb0d496a035 | kashev | Update license year | Jun 11 2018 | ||||
| 74444d42824f | kashev | New repo URL | Jun 11 2018 | ||||
| 20aceba7c608 | kashev | Add "build" type, "bootstrap" is deprecated | Jun 11 2018 | ||||
| 9a04e950b101 | kashev | Reorganize module code | Feb 23 2018 | ||||
| 17835f745d87 | kashev | Add check for singularity & version Add colored output Add pipeline file format… | Feb 23 2018 | ||||
| 8ab443a369f1 | kashev | Dry-run functionality | Nov 27 2017 | ||||
| fba621f93d87 | kashev | Template command | Nov 27 2017 | ||||
| 1b860edeb373 | kashev | Packaged for PyPi | Jul 20 2017 |
README.md
README.md
singularity-pipeline
Description
singularity-pipeline is a Python-based tool for describing, building and running Singularity container-based pipelines.
This tool has been built as part of the Pipeline Interoperability initiative of the EnhanceR project.
Source: https://github.com/kav2k/singularity-pipeline/
PyPi: https://pypi.python.org/pypi/singularity-pipeline/
Note that the script is still rough around the edges.
Installing
bash pip install singularity-pipeline
Running
See usage instructions with
bash singularity-pipeline help
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