Diffusion SP4E-TB-TL-FR (master) History

R7571/work
masterb561a5e6bbbebed0eca5d5a…

Dec 18 2018

added python script, and created hh an cc files for…
d34696137e2d
·tlemaire on Dec 18 2018, 10:10.
cpoied week13 exercise into work directory
c7a92d782f51
·tlemaire on Dec 18 2018, 09:07.

Dec 14 2018

completed README file.
4c1130162ff3
·tlemaire on Dec 14 2018, 02:38.
corrected radius equation in generate_input.py
275f3da87159
·tlemaire on Dec 14 2018, 01:45.
corrected error in eq. temp. field in generate_input.py, scaling factor in…
d2922e874450
·tlemaire on Dec 14 2018, 01:30.

Dec 13 2018

removed std::cout statements.
9787c52818b2
·tlemaire on Dec 13 2018, 23:41.
changed computeTemperature object to set invariant fields upon construction…
c6da6a1ef490
·tlemaire on Dec 13 2018, 21:43.
factorized code in test_heat_equation test script. improved…
83ca3f4e3f47
·tlemaire on Dec 13 2018, 15:36.
Merge branch 'master' of https://c4science.ch/diffusion/7571/sp-e-tb-tl
a2d594a9cb7d
·tlemaire on Dec 13 2018, 14:31.
normalized space dimension for test conditions in generate_input script
3f64baf160e1
·tlemaire on Dec 13 2018, 14:31.
Implementation and addition of compute temperature boundaries to set the…
298c2a27a2c2
·barjavel on Dec 13 2018, 14:29.
Readme completed and line test added in the test_heat_equation_fft.cc file
83e9b9acf5d2
·barjavel on Dec 13 2018, 13:40.
README file partially completed to answer homerwork's questions
6e1546709ed5
·barjavel on Dec 13 2018, 12:05.

Dec 11 2018

created test for computeFrequencies in test_fft.cc (with adapted python script).
10307a3573e9
·tlemaire on Dec 11 2018, 19:00.
Merge branch 'master' of https://c4science.ch/diffusion/7571/sp-e-tb-tl
5236b05f8049
·tlemaire on Dec 11 2018, 14:53.
improved memory usage of fft.hh wrapper. Redesigned generate_input script to…
50ce810a77e4
·tlemaire on Dec 11 2018, 14:53.
ReadMe file written to answer questions 1 to 3, rework on the compute…
6e62bce8f41a
·barjavel on Dec 11 2018, 14:23.
added extraction of real part of theta and hv matrices in generate_input script…
650d60b8685d
·tlemaire on Dec 11 2018, 11:14.
removed non-ascii characters from generate_input.py
ed32ef80f840
·tlemaire on Dec 11 2018, 10:49.
renamed all variables in generate_input.py and compute_temperature.cc to match…
b5a96b3011dc
·tlemaire on Dec 11 2018, 10:45.
modified generate_input script to generate equilibrium initial temperature…
649f607e3059
·tlemaire on Dec 11 2018, 10:04.

Dec 10 2018

updated generate_input script with better arguments parsing, vectors generation…
3bf5f1efc20e
·tlemaire on Dec 10 2018, 19:35.

Dec 9 2018

Adding computation of matrix dimension and division of freq vector in…
2c259d37422a
·Flavio Raschellà on Dec 9 2018, 18:22.
Update README.md with recent changes in the code and with answer to question 4.4
765dd1835c93
·Flavio Raschellà on Dec 9 2018, 17:58.
Adjust constant variables' values in generate_input.py
430d42ba4c2e
·Flavio Raschellà on Dec 9 2018, 17:39.
Implement heating_distribution +-N in generate_input.py and division by L in 2D…
5774bf9fcf68
·Flavio Raschellà on Dec 9 2018, 16:27.
Adjust hv output from generate_input.py + hv implementation in…
89c574fecf07
·Flavio Raschellà on Dec 9 2018, 15:25.
Solve number of particles, csv generator,and heat_distribution equations issues…
363729b3f197
·Flavio Raschellà on Dec 9 2018, 13:51.

Dec 8 2018

Implementing of a meaning full equation for the particle's properties with pho…
a20b8e79dd60
·barjavel on Dec 8 2018, 21:38.
added the Heat distribution and corresponding elemtents
2cc0117120ca
·barjavel on Dec 8 2018, 17:18.
Generate_input modified with implementation of defined position in grid and…
353be0f9d8dc
·barjavel on Dec 8 2018, 12:20.

Dec 7 2018

Updated 4.4 with boundary condition
bbc9499c04d2
·barjavel on Dec 7 2018, 23:14.
Python script for Heating distribution implemented
a230cb1b8f92
·barjavel on Dec 7 2018, 23:05.
Implementation of computetemperature test Q4.2
515234d7c6ce
·barjavel on Dec 7 2018, 21:46.
adjust fft transform in ComputeTemperature::compute
47965603ed8a
·Flavio Raschellà on Dec 7 2018, 21:24.
Implementation of Q4.1
a697af971d6b
·Flavio Raschellà on Dec 7 2018, 20:37.
Update test_fftfreq.py and solve Q3.3
20b93fb52ac3
·Flavio Raschellà on Dec 7 2018, 17:47.
Update test_fftfreq.py for computation of frequency coordinates
0e9cbcf90fa5
·Flavio Raschellà on Dec 7 2018, 16:57.
Merge branch 'master' of ssh://c4science.ch/diffusion/7571/sp-e-tb-tl
c21ed88966ad
·Flavio Raschellà on Dec 7 2018, 09:54.
Improving performance of fft.hh using malloc and fftLibrary-built methods
370156c1fa1d
·Flavio Raschellà on Dec 7 2018, 09:54.

Dec 6 2018

Exercise 4.1 partly implemented, temparature matrix and its Fourier transform…
7f2d0d6448db
·barjavel on Dec 6 2018, 17:15.
Upload 1D test for computeFrequency in fft.hh
b1e25cba605e
·Flavio Raschellà on Dec 6 2018, 15:57.
Adjusting CMakeLists.txt linking fft library directly to part library
890012d748d1
·Flavio Raschellà on Dec 6 2018, 13:24.
Comments added for Doxygen doc building
1fccb9b82e82
·barjavel on Dec 6 2018, 13:16.

Dec 5 2018

implemented computeFrequencies function in fft.hh (TO BE TESTED).
a33d57ecba00
·tlemaire on Dec 5 2018, 18:53.
implemented itransform wrapper in fft.hh and associated test in test_fft.cc…
4405995e906c
·tlemaire on Dec 5 2018, 18:32.
fixed error raised on explicit specialization of iterator_traits (workaround…
1de49de6b79f
·tlemaire on Dec 5 2018, 17:30.
solved FFTW library linking issue for fft_test. forward fft test running OK.
0cef1a9b9441
·tlemaire on Dec 5 2018, 17:19.
corrected for loop assignments in fft.hh
c5948792deda
·tlemaire on Dec 5 2018, 14:46.
Merge branch 'master' of https://c4science.ch/diffusion/7571/sp-e-tb-tl
1c422c671c49
·tlemaire on Dec 5 2018, 14:42.
implemented fft transform method (to be tested)
44db44860f8e
·tlemaire on Dec 5 2018, 14:42.

Dec 4 2018

Modified CMakelist to make it work
cdcfc167c0d8
·barjavel on Dec 4 2018, 14:37.
Merge branch 'w12ex2_FR'
837e819b5c84
·Flavio Raschellà on Dec 4 2018, 14:32.
Adding Library FFTW on CMAKE (to review)
f7ae1f7968d0
·branch: w12ex2_FR
·Flavio Raschellà on Dec 4 2018, 14:31.
commented on additional classes of this week in the README file.
a05c6e93b760
·tlemaire on Dec 4 2018, 14:25.
Cmakelist modified to in clue if needed fftw
ad37fc09e4a9
·barjavel on Dec 4 2018, 14:23.
Add Documentation with the Doxyfile
72573ee5045f
·Flavio Raschellà on Dec 4 2018, 11:48.
work directory modified for week12
42a55841ee13
·barjavel on Dec 4 2018, 11:35.

Nov 27 2018

Resolved merge conflict
52faafbb8fbe
·barjavel on Nov 27 2018, 15:51.
Modifications done to G so that exercise 1 works
1e08d709c31e
·barjavel on Nov 27 2018, 15:47.
pushing work during class
d743575e31af
·Flavio Raschellà on Nov 27 2018, 15:10.
Added work week11 directory
fab554dde2a7
·barjavel on Nov 27 2018, 13:27.
COmpute boundary, vector operators updated model working perfectly
a96c24d89ede
·barjavel on Nov 27 2018, 13:24.
Exercise 4 implemented and working
9b745535be35
·barjavel on Nov 27 2018, 10:41.
Tested but error linker
96725fafa761
·barjavel on Nov 27 2018, 09:54.
Exercise 4, implementation of vertical gravity and dissipation, not tested yet
9273fc9fb49c
·barjavel on Nov 27 2018, 09:22.

Nov 20 2018

Compute contact changed and trajectories evaluated in paraview
fff51da09eb3
·barjavel on Nov 20 2018, 17:24.
delete std::cout from verlet
c4d4447b693a
·Flavio Raschellà on Nov 20 2018, 17:05.
adjust penalty factor
1d312d23c336
·Flavio Raschellà on Nov 20 2018, 16:59.
merging commits
70978a3ba845
·barjavel on Nov 20 2018, 16:05.
update generate_input.py
d6a5020e2bfe
·Flavio Raschellà on Nov 20 2018, 15:59.
Implementation of ComputeBoundary
d4be3fb05eba
·Flavio Raschellà on Nov 20 2018, 15:50.
w10 implement ComputeContact::computePairInteraction
1f97d4ad4501
·Flavio Raschellà on Nov 20 2018, 14:38.
add exercise from class week10
7260a1a28c0c
·Flavio Raschellà on Nov 20 2018, 13:08.

Nov 16 2018

implemented working test fixtures for CSV reader/writer (test_csv.cc).
636477bf9799
·tlemaire on Nov 16 2018, 19:49.

Nov 15 2018

implemented test feature for csv reader in separate file (gtest not working…
d4368b086ae9
·tlemaire on Nov 15 2018, 18:31.
Merge branch 'master' of https://c4science.ch/diffusion/7571/sp-e-tb-tl
9904e76c097b
·barjavel on Nov 15 2018, 17:21.
Paraview state for trajectories saved and initialization of forces implemented…
1f433e21a966
·barjavel on Nov 15 2018, 17:21.
Merge branch 'master' of ssh://c4science.ch/diffusion/7571/sp-e-tb-tl
d9f7fd6cee9a
·Flavio Raschellà on Nov 15 2018, 13:29.
First test with UnitTest
3e219e240064
·Flavio Raschellà on Nov 15 2018, 13:28.
Initial step step file added (Step-0000.csv) and gravity constant reajusted to…
829dfb474993
·barjavel on Nov 15 2018, 11:32.
System evolution modified: files.csv step number readability for paraview…
179141e40c26
·barjavel on Nov 15 2018, 11:27.

Nov 13 2018

Implemnted system evolution - evolve
775ee5de8184
·Flavio Raschellà on Nov 13 2018, 16:03.
corrected verletintegrator compute method and assignment of interactions in…
87a0892e703a
·tlemaire on Nov 13 2018, 14:58.
cleaned compute.gravity and added exercise week9
62b773eb83fd
·barjavel on Nov 13 2018, 11:41.
Modification of compute gravity to implement vector force oriented
b6cbab3b905b
·barjavel on Nov 13 2018, 10:13.

Nov 12 2018

added factor 2 in denominator for velocity computation in…
605f29d65630
·tlemaire on Nov 12 2018, 20:06.
implemented vector::squaredNorm method, and improved computeGravity::compute…
38cbf325e782
·tlemaire on Nov 12 2018, 19:54.

Nov 7 2018

Merge branch 'branchT' of https://c4science.ch/diffusion/7571/sp-e-tb-tl
1fc67487a6ec
·barjavel on Nov 7 2018, 14:45.
compute gravity method implemented
c618bf71db3d
·branch: branchT
·barjavel on Nov 7 2018, 14:24.
ex 4.3 and 4.4 implemented
fe9971142c23
·branch: W8_ex4_1to4_FR
·Flavio Raschellà on Nov 7 2018, 09:42.
Ex 4.1 and 4.2 implemented and verified
2ed0d5c1bfe4
·Flavio Raschellà on Nov 7 2018, 09:27.
Ex3 implemented, functions implemented in vector.cc, point 3.3 to understand...
d03e852b8437
·branch: W8_ex3_FR
·Flavio Raschellà on Nov 7 2018, 00:11.

Nov 6 2018

Ex 1.1 implemented and verified + initial implementation of the main
b7c363359935
·branch: W8_ex1_FR
·Flavio Raschellà on Nov 6 2018, 19:27.
Update csv_reader using sharedPointer and implement functions in System.cc
b863f8c494e8
·Flavio Raschellà on Nov 6 2018, 16:10.
Implementing >> and << operators in Vector class
6160720023a6
·Flavio Raschellà on Nov 6 2018, 15:30.
Merge branch 'master' of https://c4science.ch/diffusion/7571/sp-e-tb-tl
e438305fcf1e
·barjavel on Nov 6 2018, 14:57.
Exercice week8 1.1 first draft particle creation
dcbb21696a50
·barjavel on Nov 6 2018, 14:56.

Nov 5 2018

Add Professor's information for exercise week 7
47c6370e9ba3
·Flavio Raschellà on Nov 5 2018, 11:15.

Oct 29 2018

Solved tab separtor issue on write_series.cc and plot_results.py
e38d6155ce72
·Flavio Raschellà on Oct 29 2018, 11:13.