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Diffusion ShoulderDB_ImportSegmentMeasureAnalyze (master) Graph

R8218/ShoulderCase
master

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CommitAuthorDetailsCommitted
71604e1d9392boubat
refactor: Remove deprecated classes and move general purpose classes to the… 
May 20 2021
c99e6574cba5boubat
refactor: Update config extraction method across system. 
May 20 2021
5f7d12c9d877Matthieu Boubat (lbovenus)
refactor: Uncomment out the filtering of dicom volume. 
May 20 2021
824eabc2dc38Matthieu Boubat (lbovenus)
feat: Allow to load multiple SCases from a list of SCaseID. 
May 19 2021
47e03f89908cMatthieu Boubat (lbovenus)
refactor: Adapt pixel coordinates transformation for left side shoulder. 
May 19 2021
c972dfcc3ad1Matthieu Boubat (lbovenus)
refactor: Update methods to take into account new file names containing… 
May 7 2021
35a68cd60da1Matthieu Boubat (lbovenus)
fix: Fix wrong methods and properties names. 
May 5 2021
1e234606ba89Matthieu Boubat (lbovenus)
refactor: Change slice size and position. 
May 5 2021
64c30663f9abboubat
refactor: Make auto scapula data loading prioritize current shoulder side. 
May 5 2021
460092f903beboubat
feat: Add methods that bundle several submethods. 
May 5 2021
fca61af81212boubat
refactor: Extract amira/slicer data loading methods from general load method. 
May 5 2021
518851eaf0c0boubat
refactor: Change char arrays for strings. 
May 5 2021
8ca3dd3334e9boubat
refactor: Change legend location of rotator cuff segmentations 2D plot. 
May 5 2021
46649b7ec7f4boubat
feat: Add Teres Minor humeral head insertion and force influence on antero… 
May 5 2021
7a96744b4d4eboubat
feat: Add rotator cuff muscles centroid plot to segmentations plot. 
Apr 28 2021
896a4ab346a3boubat
feat: Add gaussian filter for hard kernel CT scans. 
Apr 28 2021
c749ea4a43ecboubat
refactor: Change muscle force vector to represent muscular activation. 
Apr 23 2021
b523d4a048f5boubat
feat: Add method to export humeral head fitted sphere to .ply file. 
Apr 21 2021
ec80aabdeaffboubat
feat: Add method to export a Sphere to .ply file thanks to BinarySphere. 
Apr 21 2021
6c84779ab0bcboubat
feat: Add method to find new 3DSlicer folder of SCase. 
Apr 21 2021
16f1b22821e2boubat
feat: Add method to load humerus landmakrs from 3DSlicer markups files. 
Apr 21 2021
e5cc35f4bed9boubat
refactor: Remove disposable argument and fix char/string concatenation. 
Apr 21 2021
90907cc260b3boubat
refactor: Remove deprecated property. 
Apr 21 2021
47c2d59842b9boubat
refactor: Change shoulder.muscles for shoulder.rotatorCuff. 
Apr 16 2021
fb2909401cdaboubat
fix: Fix char/string issue. 
Apr 16 2021
afa310747b4fboubat
refactor: Divide measure method into three. 
Apr 16 2021
bab625d091e5boubat
feat: Add measurement of rotator cuff antero-posterior imbalance angle. 
Apr 16 2021
eb0fc6f6f92aboubat
refactor: Make plot method ShoulderCasePlotter compliant. 
Apr 16 2021
bed4780af6f2boubat
fix: Add missing coefficient. 
Apr 16 2021
02ce2d5800e0boubat
feat: Add muscle measurement of insertion and force vector. 
Apr 16 2021
5eff374d8477boubat
feat: Add Humerus plot method. 
Apr 16 2021
04648c7bb765boubat
feat: Add plot methods to RotatorCuff. 
Apr 16 2021
1356f5320c27Matthieu Boubat (lbovenus)
fix: Change variable names. 
Apr 15 2021
490ef61530c7boubat
feat: Implement RotatorCuff object and add it to Shoulder. 
Apr 15 2021
158ebe27c403boubat
refactor: Change Muscle construction and add properties summary. 
Apr 15 2021
0cfd68911b42boubat
fix: Change folder name. 
Apr 15 2021
e3ee0285f235boubat
refactor: Change char array for string. 
Apr 15 2021
0b92d3ff947eboubat
refactor: Change data path handling in Muscles related objects. 
Apr 15 2021
6b09b54993f4boubat
refactor: Change the accessibility of objects' properties refering to other… 
Apr 15 2021
b6e0aee02633boubat
refactor: Make the Shoulder objects and children simpler and remove the need… 
Apr 15 2021
6b6233bb1687boubat
refactor: Change data paths from being properties to method which remove the… 
Apr 15 2021
18386f62dc97boubat
refactor: Change Sphere construction to be intialisable with center and radius. 
Apr 15 2021
ff30e63892eeboubat
feat: Add Sphere polar tangent point finding method. 
Apr 15 2021
4f23238a0e74boubat
fix: Fix error in minus() when using an array as input. 
Apr 15 2021
1f6f1a05884bboubat
refactor: Change muscle centroid and contour methods ownership from… 
Apr 14 2021
8672dc70095eboubat
feat: Add three features to Vector. 
Apr 14 2021
fb70e1933436boubat
Merge branch 'muscles_centroid_plot' into 'master' 
Apr 14 2021
d88534adf210boubat
feat: Add rotator cuff muscles contour and centroid 3D plots. 
Apr 14 2021
3cb9b325756bMatthieu Boubat (lbovenus)
feat: Add the slice's pixel coordinates export. 
Apr 14 2021
597bb3fcfc31Pezhman Eghbalishamsabadi/boubat
feat: Add methods to export the whole SCases data into a table and save it in a… 
Apr 13 2021
760312dc35f9boubat
fix: Remove typos. 
Apr 8 2021
1145767ab72dboubat
feat: Add 3D humeral subluxation index measurement. 
Apr 8 2021
6f25c23e0c4eboubat
feat: Add glenoid BETA angle measurement. 
Apr 8 2021
a52c52ee0465boubat
feat: Add three new features to Vector. 
Apr 8 2021
a03fb9943223boubat
feat: Add glenoid rim inclination measurement. 
Apr 8 2021
9341c9dbeba3boubat
feat: Add glenoid retroversion measurement. 
Apr 8 2021
01f18b8b1139boubat
feat: Add three features to the Vector class. 
Apr 8 2021
d7e99d4c0d68boubat
feat: Add the measure of glenoid infero superior line. 
Apr 8 2021
71a2298f35d1boubat
feat: Add the measure of glenoid postero anterior line. 
Apr 8 2021
47bcd381205bboubat
refactor: Modify Friedman's line to be a Vector instance. 
Apr 8 2021
20208d0985c4boubat
feat: Add a basic Vector class. 
Apr 8 2021
56fd32646096Matthieu Boubat (lbovenus)
feat: Add functions to measure muscles centroid and contour coordinates in… 
Apr 1 2021
9fe70821ddb6Matthieu Boubat (lbovenus)
feat: Add two functions to read muscle related segmentation mask and slice… 
Apr 1 2021
23f49df7c6a9Matthieu Boubat (lbovenus)
refactor: Add missing pixel coordinates save. 
Apr 1 2021
cd7e29c50566Matthieu Boubat (lbovenus)
feat: Finish slice pixel coordinates extraction implementation. 
Apr 1 2021
d58ec00b5bacboubat
feat:WIP Add slice's pixel coordinates export. 
Apr 1 2021
792eb24bde0eboubat
feat: Add a method to find the extreme points of the glenoid rim according to… 
Mar 23 2021
b001c7a73902boubat
feat: Add methods to find the rim points of glenoids. 
Mar 23 2021
1b7c0b38b029boubat
feat: Implement the measure of the Friedman's scapular line. 
Mar 22 2021
b04bf8ae5867Matthieu Boubat (lbovenus)
refactor: Remove anonymisation code. 
Feb 16 2021
079b06c8538dMatthieu Boubat (lbovenus)
refactor: Change the output of ShoudlerCaseLoader.loadAllCases() from cell… 
Feb 16 2021
c4f2d93b1eb0Matthieu Boubat (lbovenus)
feat: Add the anonymisation of all the files containing the IPP in the case… 
Jan 12 2021
8ac49aeeca7cMatthieu Boubat (lbovenus)
refactor: Change Logger class last lines to show stop time. 
Jan 11 2021
62cde38bf596Matthieu Boubat (lbovenus)
refactor: Change properties order in getProperties() method. 
Dec 11 2020
5d659a6abe89Matthieu Boubat (lbovenus)
refactor: Update ShoulderCaseAnonymiser. 
Dec 11 2020
20bc822d890cboubat
feat: Fully implement ShoulderCaseAnonymiser. 
Dec 11 2020
384fdd222785boubat
refactor: Allow SCase parser and loader to use string besides char array. 
Dec 10 2020
933aae66307dboubat
feat: Add ShoulderCaseAnonymiser class and implement dicom anonymisation. 
Dec 10 2020
a4fcd36437f5boubat
fix: Revert last modification and add alternate fix to calcDensity(). 
Sep 24 2020
bf01a05dacccboubat
fix: Change wrong array indices in calcDensity. 
Sep 10 2020
b5834eb2162cMatthieu Boubat (lbovenus)
refactor: Remove error logging from inside Nathan algotihm. 
Sep 10 2020
782d0b035f13boubat
feat: Add isempty() method to Sphere class and open class accessibility to… 
Sep 4 2020
d8f3d531ec36boubat
refactor: Add the '_Mask' file terminology in the MuscleMeasurer methods. 
Aug 31 2020
d542f8cdde1fboubat
refactor: Update muscles plot method with nes file names used. 
Aug 31 2020
bb01683906edboubat
refactor: Rename and document the MusclesContainer slicing methods. 
Aug 17 2020
903ac534e00fboubat
feat: Add a function to find the bounding box of a dicom set. 
Aug 14 2020
3fa1591c88a9boubat
refactor: (re)Add the selection of smooth dicom for rotator cuff slices. 
Aug 6 2020
86ab4c9fc0c3boubat
fix: Change verified shoulder in configCamera. 
Aug 6 2020
0013fd4ddd1aboubat
refactor: Modify zoom, light position and default scapula axes in configCamera. 
Aug 5 2020
bfa30844d304boubat
fix: Correct name string in MusclesContainer.plot(). 
Aug 5 2020
47af1ac7f80eboubat
refactor: Update ShoulderCase to SCaseIDParser modifications. 
Aug 5 2020
7568f1ca7ccdboubat
refactor: Change filename creation to use fullfile(). 
Aug 5 2020
be3f45097169boubat
refactor: Add arguments to MusclesContainer methods to choose combinations of… 
Aug 5 2020
453355cdf2e7boubat
refactor: Change displayed scapula surface to be opaque. 
Aug 5 2020
47a8997f16daboubat
refactor: Change displayed scapula surface to be opaque. View axes are now from… 
Aug 5 2020
a7767961504aboubat
feat: Add a method to sort scapula's groove points lateral to medial. 
Aug 4 2020
9c2a857c1e10boubat
refactor: Delete a few commands in ShoulderCasePlotter.plot(). 
Aug 4 2020
01bf191f3e58boubat
refactor: Rename axes initialisation method and add custom toolbar. 
Aug 4 2020
77c8270f788bboubat
feat: Add new buttons to ShoulderCasePlotter. 
Aug 4 2020
3d688f719941boubat
feat: Add camera related methods to ShoulderCasePlotter. 
Aug 4 2020
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