boubat committed R8218:bb709a4b5cec: Merge branch 'rotator_cuff' into 'master' (authored by boubat).

boubat committed R8218:47c2d59842b9: refactor: Change shoulder.muscles for shoulder.rotatorCuff. (authored by boubat).

boubat committed R8218:afa310747b4f: refactor: Divide measure method into three. (authored by boubat).

boubat committed R8218:fb2909401cda: fix: Fix char/string issue. (authored by boubat).

boubat committed R8218:bab625d091e5: feat: Add measurement of rotator cuff antero-posterior imbalance angle. (authored by boubat).

boubat committed R8218:eb0fc6f6f92a: refactor: Make plot method ShoulderCasePlotter compliant. (authored by boubat).

boubat committed R8218:04648c7bb765: feat: Add plot methods to RotatorCuff. (authored by boubat).

boubat committed R8218:5eff374d8477: feat: Add Humerus plot method. (authored by boubat).

boubat committed R8218:02ce2d5800e0: feat: Add muscle measurement of insertion and force vector. (authored by boubat).

boubat committed R8218:bed4780af6f2: fix: Add missing coefficient. (authored by boubat).

boubat committed R8218:158ebe27c403: refactor: Change Muscle construction and add properties summary. (authored by boubat).

boubat committed R8218:0cfd68911b42: fix: Change folder name. (authored by boubat).

boubat committed R8218:490ef61530c7: feat: Implement RotatorCuff object and add it to Shoulder. (authored by boubat).

boubat committed R8218:0b92d3ff947e: refactor: Change data path handling in Muscles related objects. (authored by boubat).

boubat committed R8218:e3ee0285f235: refactor: Change char array for string. (authored by boubat).

boubat committed R8218:5fe8ec4aa946: Merge branch 'reveal_objects_references' into 'master' (authored by boubat).

boubat committed R8218:6b09b54993f4: refactor: Change the accessibility of objects' properties refering to other… (authored by boubat).

boubat committed R8218:2fd89454f2d1: Merge branch 'data_path' into 'master' (authored by boubat).

boubat committed R8218:b6e0aee02633: refactor: Make the Shoulder objects and children simpler and remove the need… (authored by boubat).

boubat committed R8218:6b6233bb1687: refactor: Change data paths from being properties to method which remove the… (authored by boubat).

boubat committed R8218:e504ac2a0db1: Merge branch 'sphere_polar_tangent_point' into 'master' (authored by boubat).

boubat committed R8218:4f23238a0e74: fix: Fix error in minus() when using an array as input. (authored by boubat).

boubat committed R8218:ff30e63892ee: feat: Add Sphere polar tangent point finding method. (authored by boubat).

boubat committed R8218:18386f62dc97: refactor: Change Sphere construction to be intialisable with center and radius. (authored by boubat).

boubat committed R8218:1f6f1a05884b: refactor: Change muscle centroid and contour methods ownership from… (authored by boubat).

boubat committed R8218:5de2a22ec3fb: Merge branch 'vector_features_extension' into 'master' (authored by boubat).

boubat committed R8218:8672dc70095e: feat: Add three features to Vector. (authored by boubat).

boubat committed R8218:fb70e1933436: Merge branch 'muscles_centroid_plot' into 'master' (authored by boubat).

boubat committed R8218:d88534adf210: feat: Add rotator cuff muscles contour and centroid 3D plots. (authored by boubat).

boubat committed R8218:68fbf12d1bb0: Merge branch 'dicom_slice_pixel_coordinates' into 'master' (authored by boubat).

boubat committed R8218:597bb3fcfc31: feat: Add methods to export the whole SCases data into a table and save it in a… (authored by Pezhman Eghbalishamsabadi <pezhman.eghbalishamsabadi@epfl.ch>).

boubat committed R8218:1835cad42086: Merge branch 'pezhman_excelExport' into 'master' (authored by boubat).

boubat committed R8218:760312dc35f9: fix: Remove typos. (authored by boubat).

boubat committed R8218:6679286a66d7: Merge branch 'humeral_subluxation_index' into 'master' (authored by boubat).

boubat committed R8218:1145767ab72d: feat: Add 3D humeral subluxation index measurement. (authored by boubat).

boubat committed R8218:6f25c23e0c4e: feat: Add glenoid BETA angle measurement. (authored by boubat).

boubat committed R8218:7724fb5169f7: Merge branch 'glenoid_beta_angle' into 'master' (authored by boubat).

boubat committed R8218:a858d2175d15: Merge branch 'vector_features_extension' into 'master' (authored by boubat).

boubat committed R8218:a52c52ee0465: feat: Add three new features to Vector. (authored by boubat).

boubat committed R8218:e4f6836889be: Merge branch 'glenoid_rim_inclination' into 'master' (authored by boubat).

boubat committed R8218:a03fb9943223: feat: Add glenoid rim inclination measurement. (authored by boubat).

boubat committed R8218:9156ef991edf: Merge branch 'glenoid_retroversion' into 'master' (authored by boubat).

boubat committed R8218:9341c9dbeba3: feat: Add glenoid retroversion measurement. (authored by boubat).

boubat committed R8218:040981f51e25: Merge branch 'vector_features_extension' into 'master' (authored by boubat).

boubat committed R8218:01f18b8b1139: feat: Add three features to the Vector class. (authored by boubat).

boubat committed R8218:9ead59500bba: Merge branch 'glenoid_infero_superior_line' into 'master' (authored by boubat).

boubat committed R8218:d7e99d4c0d68: feat: Add the measure of glenoid infero superior line. (authored by boubat).

boubat committed R8218:96b451b62b22: Merge branch 'glenoid_postero_anterior_line' into 'master' (authored by boubat).

boubat committed R8218:71a2298f35d1: feat: Add the measure of glenoid postero anterior line. (authored by boubat).

boubat committed R8218:47bcd381205b: refactor: Modify Friedman's line to be a Vector instance. (authored by boubat).

boubat committed R8218:b3f6fa24910b: Merge branch 'friedmans_line_modification' into 'master' (authored by boubat).

boubat committed R8218:1e15fcb346eb: Merge branch 'vector_class' into 'master' (authored by boubat).

boubat committed R8218:20208d0985c4: feat: Add a basic Vector class. (authored by boubat).

boubat committed R8218:7b3df2400ac2: Merge branch 'musclesCentroid' into 'master' (authored by boubat).

boubat committed R8218:75435e547e69: Merge branch 'slicePixelsCoordinates' into 'master' (authored by boubat).

boubat committed R8218:d58ec00b5bac: feat:WIP Add slice's pixel coordinates export. (authored by boubat).

boubat committed R8218:b82e54c735ef: Merge branch 'glenoidRim' into 'master' (authored by boubat).

boubat committed R8218:792eb24bde0e: feat: Add a method to find the extreme points of the glenoid rim according to… (authored by boubat).

boubat committed R8218:b001c7a73902: feat: Add methods to find the rim points of glenoids. (authored by boubat).

boubat committed R8218:6f48271545d0: Merge branch 'friedmansLine' into 'master' (authored by boubat).

boubat committed R8218:1b7c0b38b029: feat: Implement the measure of the Friedman's scapular line. (authored by boubat).

boubat committed R8218:384fdd222785: refactor: Allow SCase parser and loader to use string besides char array. (authored by boubat).

boubat committed R8218:20bc822d890c: feat: Fully implement ShoulderCaseAnonymiser. (authored by boubat).

boubat committed R8218:933aae66307d: feat: Add ShoulderCaseAnonymiser class and implement dicom anonymisation. (authored by boubat).

boubat committed R8218:a4fcd36437f5: fix: Revert last modification and add alternate fix to calcDensity(). (authored by boubat).

boubat committed R8218:2410f329af66: fix: Remove useless code that raised errors. (authored by boubat).

boubat committed R8218:cadc91e3ddda: doc: Remove repository hyperlink in README. (authored by boubat).

boubat committed R8218:bf01a05daccc: fix: Change wrong array indices in calcDensity. (authored by boubat).

boubat committed R8218:506c043e4ebd: feat: Add and document a setup() function for the whole system. (authored by boubat).

boubat committed R8218:782d0b035f13: feat: Add isempty() method to Sphere class and open class accessibility to… (authored by boubat).

boubat committed R8218:f4a09d96e4b9: Test c4s commit display (authored by boubat).

boubat committed R8218:4e54dfa61f58: refactor: Update measureSCase with new muscle file names. (authored by boubat).

boubat committed R8218:d8f3d531ec36: refactor: Add the '_Mask' file terminology in the MuscleMeasurer methods. (authored by boubat).

boubat committed R8218:d542f8cdde1f: refactor: Update muscles plot method with nes file names used. (authored by boubat).

boubat committed R8218:bb01683906ed: refactor: Rename and document the MusclesContainer slicing methods. (authored by boubat).

boubat committed R8218:903ac534e00f: feat: Add a function to find the bounding box of a dicom set. (authored by boubat).

boubat committed R8218:e35bc7f64b27: refactor: Update plotSCase to use loadSCase. (authored by boubat).

boubat committed R8218:8b6e8bb99bb9: feat: Add a function to directly load a ShoulderCase given its ID. (authored by boubat).

boubat committed R8218:3fa1591c88a9: refactor: (re)Add the selection of smooth dicom for rotator cuff slices. (authored by boubat).

boubat committed R8218:86ab4c9fc0c3: fix: Change verified shoulder in configCamera. (authored by boubat).

boubat committed R8218:0013fd4ddd1a: refactor: Modify zoom, light position and default scapula axes in configCamera. (authored by boubat).

boubat committed R8218:bfa30844d304: fix: Correct name string in MusclesContainer.plot(). (authored by boubat).

boubat committed R8218:8c30e81af50d: fix: Prevent measured SCase ID to be different of requested SCase ID. (authored by boubat).

boubat committed R8218:7568f1ca7ccd: refactor: Change filename creation to use fullfile(). (authored by boubat).

boubat committed R8218:47af1ac7f80e: refactor: Update ShoulderCase to SCaseIDParser modifications. (authored by boubat).

boubat committed R8218:be3f45097169: refactor: Add arguments to MusclesContainer methods to choose combinations of… (authored by boubat).

boubat committed R8218:47a8997f16da: refactor: Change displayed scapula surface to be opaque. View axes are now from… (authored by boubat).

boubat committed R8218:b24363f680f3: refactor: Update measureSCase to MusclesContainers modifications. (authored by boubat).

boubat committed R8218:453355cdf2e7: refactor: Change displayed scapula surface to be opaque. (authored by boubat).

boubat committed R8218:9c2a857c1e10: refactor: Delete a few commands in ShoulderCasePlotter.plot(). (authored by boubat).

boubat committed R8218:3d688f719941: feat: Add camera related methods to ShoulderCasePlotter. (authored by boubat).

boubat committed R8218:a7767961504a: feat: Add a method to sort scapula's groove points lateral to medial. (authored by boubat).

boubat committed R8218:6f3d07bd7acf: refactor: Add a varargout and update docstring. (authored by boubat).

boubat committed R8218:77c8270f788b: feat: Add new buttons to ShoulderCasePlotter. (authored by boubat).

boubat committed R8218:a6c0ef26a380: refactor: Make SoulderCase.plot return the ShoulderCasePlotter. (authored by boubat).

boubat committed R8218:01bf191f3e58: refactor: Rename axes initialisation method and add custom toolbar. (authored by boubat).

boubat committed R8218:997424434cad: refactor: Update shoulder case plot functions according to AT feddback. (authored by boubat).

boubat committed R8218:d034858e1ceb: feat: Implement methods to export landmarks in Amira file. (authored by boubat).

boubat committed R8218:59e8c1e80ec4: feat: Add methods to Scapula to export its landmakrs into its Amira folder. (authored by boubat).

boubat committed R8218:fee8d639a92c: refactor: Update the utilisation of UpdatableText by ShoulderCaseLoader. (authored by boubat).