fix: Adapt SCaseIDParser to new version of FileExtractor

perf: Assert validity of inputs and output of FileExtractor

perf: Change the output of FileExtractor object to directly return the variable…

fix: Orient the glenoid.centerLine toward ML

fix: Change the use of exist() for dir()

fix: Reduce the required number of groove points in scapula CoordinateSystem

doc: Update the description of measureSCase arguments and its examples

fix: Re-create the glenoid.walch property and change the auto-measurements…

fix: Comment out outdated reference to glenoid.walch

fix: Change reference to glenoid.SCase in glenoid.calcDensity

fix: Change the reference to glenoid.SCase for glenoid.scapula.shoulder.SCase…

perf: Add more try/catch in measurements of measureSCase and log the error…

fix: Change the access of the contructor of Glenoid

fix: Add a missing 'end' statement in GlenoidManual

refactor: Change the way the other objects handle the new GlenoidAuto/Manual…

fix: Correct typo

refactor: Extract one abstract and two manual/auto object out of the Glenoid…

fix: Add try/catch in measureSCase measurements to prevent measureSCase from…

refactor: Change openConfigFile function for ConfigFileExtractor.getVariable…

feat: Add the current folder and subfolders in MATLAB path at the beginning of…

fix: Change python path dependencies to be chosen in config file for muscles.

doc: Update measurSCase header to describe the new arguments handling

refactor: Delete the output of glenoid.measureVersionAndInclination

refactor: Delete CT2Scapula method, outdated by the CoordinateSystem.express…

fix: Avoid SCase creation error in measureSCase.m

refactor: Implement the glenoid.morphology method to call the dedicated…

refactor: Extract a glenoid method to measure its center line

fix: Change methods' names to fit their files' names

refactor: Extract a method to measure glenoid version and inclination values

refactor: Change two glenoid methods' names that gave useless informations

feat: Add a method to measure the glenoid antero-superior angle with PCA

refactor: Extract a method from glenoid.morphology that expresses the glenoid…

feat: Add a function to project vectors on a vector

feat: Add methods to project points on the three planes spaned by a…

refactor: Extract methods to set glenoid width and height with PCA

refactor: Change variable name in glenoid.measureCenter.m

refactor: Extract method to measure glenoid depth

refactor: Extrcat

refactor: Split measureSCase into three part

refactor: Same as previous commit

refactor: Change measureSCase to handle the new ShoulderCase properties

refactor: Change the references to SCase for references to the direct parent…

refactor: Split the shoulder property into two new shoulderManual and…

refactor: Change the implementation of getDataRootPath to use the FileExtractor…

refactor: Split Scapula class into one abstract and two concrete classes

feat: Add classes to get text from files

refactor: Specify method's scope in method's name

refactor: Give properties their values with config file instead of hard code

refactor: Split Shoulder class into one abstract and two concrete classes

feat: Add a method to load a ShoulderCase

refactor: Change methods name containing 'SCase' with 'Case'

refactor: Change names of classes

refactor: Remove the future poltergeist class SCaseDB

feat: Add a Logger class to handle log files

refactor: Remove the obsolete TimerData class

feat: Add a class that implements linked lists

refactor: Change the global property type from containers.Map to LinkedList and…

feat: Add a function that asserts that a text matches an expression

feat: Add a function that returns the current operating system's path separator

feat: Add an object that measures multiple elapsed times

feat: Add a class that validates shoulder cases ID

feat: Add an object to search shoulder cases in a directory tree

feat: Add objects that map shoulder cases paths to shoulder cases ID

fix: Make the CoordinateSystem.isOrthogonal method independent from axes' norms

docs: Add details in a method description

refactor: Extract methods from coordSysSet. The main part is given to the new…

perf: Complete the methods to set a coordinate system

feat: Add a function to find the longest vector among a given array of vectors

feat: Add the new Plane class that can create and use 3D planes

feat: Add a function to choose the direction of a vector toward another one

feat: Add the glenoid surface mean point in a sub-property

refactor: Delete the deprecated Ellipsoid class and related methods

feat: Add a method for measuring glenoid width and height

feat: Add a class for coordinate systems

Merge branch 'master' into boubat

feat: Add the Ellipsoid object for the glenoid fitted ellipsoid

feat: Add a method to express points in local coordinate system

feat: Add a method for measuring glenoid radius thanks to a fitted sphere

fix: Move the Sphere class to ShoulderCase/

feat: Extract a method used for measuring glenoid center

feat: Add the Sphere object for the glenoid fitted sphere

refactor: Extract glenoid center measurement methods out from glenoid…

feat&fix: Add excel data to SCase. Fix condition in argument handling.

perf: Clean listSCase method

feat: Add a pool object property

feat: Add listSCase method

Merge branch 'master' of https://c4science.

creation of the SCaseDB class

patch

reorganize measureSCase loops and extend the 'auto' loop

dicominfopath now correctly chosen pointing to the dicom file in the middle of…

measureScase now auto computes the RC muscles degenration, and exports meta…

Small correction in README.md.

The catch now return a correct outputArg to detect that DICOM files couldn't be…

Modification in arguments handling by measureSCase. rawFromExcel changed back…

Fixed and modified according to A.Terrier comments

fopen() error 'fixed'. (No, apparently you can't fopen a file already opened in…

Add whole database saving, upgrade measureSCase arguments verification, update…

update logfile writing.

Filename changed back to 'anatomy.csv'