fix: Revert last modification and add alternate fix to calcDensity().

fix: Remove useless code that raised errors.

doc: Remove repository hyperlink in README.

fix: Change wrong array indices in calcDensity.

feat: Add and document a setup() function for the whole system.

feat: Add isempty() method to Sphere class and open class accessibility to…

Test c4s commit display

refactor: Update measureSCase with new muscle file names.

refactor: Add the '_Mask' file terminology in the MuscleMeasurer methods.

refactor: Update muscles plot method with nes file names used.

refactor: Rename and document the MusclesContainer slicing methods.

feat: Add a function to find the bounding box of a dicom set.

refactor: Update plotSCase to use loadSCase.

feat: Add a function to directly load a ShoulderCase given its ID.

refactor: (re)Add the selection of smooth dicom for rotator cuff slices.

fix: Change verified shoulder in configCamera.

refactor: Modify zoom, light position and default scapula axes in configCamera.

fix: Correct name string in MusclesContainer.plot().

fix: Prevent measured SCase ID to be different of requested SCase ID.

refactor: Change filename creation to use fullfile().

refactor: Update ShoulderCase to SCaseIDParser modifications.

refactor: Add arguments to MusclesContainer methods to choose combinations of…

refactor: Change displayed scapula surface to be opaque. View axes are now from…

refactor: Update measureSCase to MusclesContainers modifications.

refactor: Change displayed scapula surface to be opaque.

refactor: Delete a few commands in ShoulderCasePlotter.plot().

feat: Add camera related methods to ShoulderCasePlotter.

feat: Add a method to sort scapula's groove points lateral to medial.

refactor: Add a varargout and update docstring.

feat: Add new buttons to ShoulderCasePlotter.

refactor: Make SoulderCase.plot return the ShoulderCasePlotter.

refactor: Rename axes initialisation method and add custom toolbar.

refactor: Update shoulder case plot functions according to AT feddback.

feat: Implement methods to export landmarks in Amira file.

feat: Add methods to Scapula to export its landmakrs into its Amira folder.

refactor: Update the utilisation of UpdatableText by ShoulderCaseLoader.

refactor: Update UpdatableText.

feat: Add a class to export auto landmarks.

docs: Update README about visualisation of data.

refactor: Revert changes from last commit that alters measurements.

refactor: Update measureSCase() to new method's name.

feat: Updates to work with muscles manual segmentations.

refactor: Correct displayed sentence.

refactor: Update plotSCase() function.

refactor: Update classes in order to work with ShoulderCasePlotter.

refactor: Remove deprecated ShoulderCase plot related functions.

feat: Implement the ShoulderCasePlotter class.

fix: Fix loadAllCases() to actually return the loaded cases.

Merge branch 'boubat' of https://c4science.

refactor: Change properties accessibility to private.

feat: Add class to print updatable message in the command window.

fix: Fix two methods.

refactor: Update and reduce responsability of plotSCase().

refactor: Assert that case is found in loadCase()

refactor: Remove deprecated classes.

refactor: Implement a new ShoulderCaseLoader class.

refactor: Move function to SCaseIDParser class.

feat: Implement plot() method for Glenoid class.

fix: Fix typo.

Merge branch 'boubat'

fix:Scapula: Change the shoulder side selection to load auto landmarks.

refactor:plot: Enhance and update plot functions of classes.

refactor: Update segmentScapula utilisation to new database functions.

refactor: Update segmentScapula utilisation to new database functions.

docs: Correct typos in README.

Merge branch 'boubat'

docs: Update README according to A.Terrier feedback.

build: Remove unused files and folders.

doc: Add file destination in createRotatorCuffSlices().

docs: Implement a whole new README following the costcalc repository model.

refactor:CasesFinder: Change concatenation for fullfile() utilization. Add…

refactor:ShoulderCase: Change reference from auto shoulder to manual shoulder…

docs: Update or add documentation for all classes in ./ShoulderCase.

refactor:CoordinateSystem: Change how the rotationMatrix is created to avoid…

docs:README: Add the description of the config file.

refactor:ShoulderCase: Update objects structure in appendToCSV() and output()…

refactor:measureSCase: Change the creation of SCaseDB variable to take…

docs:README: Update doc.

refactor:measureSCase: Update verification of exisiting muscles data.

refactor:MusclesContainer:createRotatorCuffSlices: Throw an error when there is…

feat:ShoulderCaseLoader: Add a method to load all the cases in the database.

refactor:measureSCase: Replace listSCase() utilisation with ShoulderCaseLoader…

feat:MusclesContainer:clearSummary: Implement the empty state of…

refactor:CoordinateSystem: Extract methods toward Scapula and create the…

perf:cellArraysDifference: Set new algorithm that takes advantage of builtin…

fix:ShoulderCaseLoader: Prevent the error due to outdated SCase call to…

files: Move all the classes in their @Class folder.

refactor:Shoulder: Remove the Muscle addition in Shoulder contructor to prevent…

feat:MusclesContainer: Implement isEmpty() class' method and update other…

refactor: Update system to use new muscles classes.

feat:MusclesContainer:plot: Implement a method that plots segmentation results.

feat:MusclesContainer: Update and move the slicing and segmenting methods here.

refactor:ShoulderCaseLoader: Split the loadCase method into two.

refactor:Muscles: Remove deprecated class Muscles.

refactor:Shoulder:muscles: Update property to new MusclesContainer class.

feat:MuscleMeasurer: Implement new class to measure degeneration related values.

feat:Muscle:measure: Implement the method that replaces Muscles.degeneration.

refactor:MusclesContainer: Change a property type. Add row names to table.

fix:Shoulder: Change shoulder.dataPath not to be set at construction.

doc: Update propagateDataPath function description