boubat committed R8218:e74a03f54313: feat: implement slice point finder (authored by boubat).

boubat committed R8218:897e889584bc: refactor: update method to use muscle subdivisions (authored by boubat).

boubat committed R8218:ba3bb649febc: refactor: update method to use muscle subdivisions (authored by boubat).

boubat committed R8218:2e51341bed57: fix: change method used (authored by boubat).

boubat committed R8218:455ac22de2b1: fix: make element consistent with matlab array indexing (authored by boubat).

boubat committed R8218:c59fda2034c3: refactor: increase function scope (authored by boubat).

boubat committed R8218:6f9a8065808b: feat: implement Muscle subdivision (authored by boubat).

boubat committed R8218:2422a095c9ee: Merge branch 'feat_muscle_subdivision' into 'master' (authored by boubat).

boubat committed R8218:57a091c63bf8: Merge branch 'refactor_muscle_measurement' into 'master' (authored by boubat).

boubat committed R8218:6c0544dfd86c: Merge branch 'feat_humerus_3d_index' into 'master' (authored by boubat).

boubat committed R8218:5f4ceb217c3a: Merge branch 'refactor_glenoid_data_loading' into 'master' (authored by boubat).

boubat committed R8218:8bbb6e46983b: refactor: update shoulder case plot methods to handle right and left shoulders (authored by boubat).

boubat committed R8218:149f8321fbc1: refactor: update scapula differences plot to use sided shoulders (authored by boubat).

boubat committed R8218:c2240235c869: Merge branch 'plot_review' into 'master' (authored by boubat).

boubat committed R8218:267d777c8e23: refactor: update rotator cuff plot methods (authored by boubat).

boubat committed R8218:a269cbf6b3ec: Merge branch 'muscle_measurements_update' into 'master' (authored by boubat).

boubat committed R8218:f1321e57d854: Merge branch 'dicom_slice_coordinates_review' into 'master' (authored by boubat).

boubat committed R8218:9339b0bfce73: Merge branch 'measurements_revision' into 'master' (authored by boubat).

boubat committed R8218:657b1a04e841: Merge branch 'time_log_execution' into 'master' (authored by boubat).

boubat committed R8218:b588b6334874: Merge branch 'logger_revision' into 'master' (authored by boubat).

boubat committed R8218:047be108ed3b: Merge branch 'export_data_revision' into 'master' (authored by boubat).

Matthieu Boubat (lbovenus) <matthieu.boubat@alumni.ch> committed R8218:a69e46bd180b: refactor: Change concatenation for table outer join. (authored by boubat).

Matthieu Boubat (lbovenus) <matthieu.boubat@alumni.ch> committed R8218:1cb19cfdc519: feat: Export two different rows for auto/manual SCase data. (authored by boubat).

Matthieu Boubat (lbovenus) <matthieu.boubat@alumni.ch> committed R8218:29871e28c498: refactor: Remove extra '_' in some variable names. (authored by boubat).

boubat committed R8218:ca5287da3e44: refactor: Change concatenation for table outer join. (authored by boubat).

boubat committed R8218:6d7188f619b3: refactor: Remove extra '_' in some variable names. (authored by boubat).

boubat committed R8218:d6b636d0a9c1: feat: Export two different rows for auto/manual SCase data. (authored by boubat).

boubat committed R8218:5407f618736d: Merge branch 'load_normal_pathological' into 'master' (authored by boubat).

boubat committed R8218:446df2f92a11: Merge branch 'clean' into 'master' (authored by boubat).

boubat committed R8218:71604e1d9392: refactor: Remove deprecated classes and move general purpose classes to the… (authored by boubat).

boubat committed R8218:f23931f03d50: Merge branch 'config_file_revision' into 'master' (authored by boubat).

boubat committed R8218:0a6fd799e477: feat: Add function to parse a config json file. (authored by boubat).

boubat committed R8218:fe6d651e72db: fix: Change default config file to work with updated code. (authored by boubat).

boubat committed R8218:c99e6574cba5: refactor: Update config extraction method across system. (authored by boubat).

boubat committed R8218:94b5f04f6e1d: refactor: Change default config creation to create a config.json file. (authored by boubat).

boubat committed R8218:e687b8260c8d: Merge branch 'nathan_slices_filter' into 'master' (authored by boubat).

boubat committed R8218:7aa47bcee050: Merge branch 'load_them_all' into 'master' (authored by boubat).

boubat committed R8218:98b1c8372890: Merge branch 'multiple_case_loading' into 'master' (authored by boubat).

boubat committed R8218:2cadbe59756a: Merge branch 'slice_pixel_coordinates_fix' into 'master' (authored by boubat).

boubat committed R8218:df3793e68a93: Merge branch 'humerus_side' into 'master' (authored by boubat).

boubat committed R8218:4c31af5c2cdb: Merge branch 'rotator_cuff_slice_parameters' into 'master' (authored by boubat).

boubat committed R8218:0e430a512032: Merge branch 'load_measure_refactor' into 'master' (authored by boubat).

boubat committed R8218:64c30663f9ab: refactor: Make auto scapula data loading prioritize current shoulder side. (authored by boubat).

boubat committed R8218:fca61af81212: refactor: Extract amira/slicer data loading methods from general load method. (authored by boubat).

boubat committed R8218:518851eaf0c0: refactor: Change char arrays for strings. (authored by boubat).

boubat committed R8218:460092f903be: feat: Add methods that bundle several submethods. (authored by boubat).

boubat committed R8218:a941f25d8be6: Merge branch 'teres_minor_imbalance' into 'master' (authored by boubat).

boubat committed R8218:8ca3dd3334e9: refactor: Change legend location of rotator cuff segmentations 2D plot. (authored by boubat).

boubat committed R8218:46649b7ec7f4: feat: Add Teres Minor humeral head insertion and force influence on antero… (authored by boubat).

boubat committed R8218:bdd284b71c15: Merge branch 'centroid_plot' into 'master' (authored by boubat).

boubat committed R8218:7a96744b4d4e: feat: Add rotator cuff muscles centroid plot to segmentations plot. (authored by boubat).

boubat committed R8218:66b76f663e5c: Merge branch 'dicom_slicer_filter' into 'master' (authored by boubat).

boubat committed R8218:896a4ab346a3: feat: Add gaussian filter for hard kernel CT scans. (authored by boubat).

boubat committed R8218:ca3a46b334f0: Merge branch 'muscles_force_vector_modification' into 'master' (authored by boubat).

boubat committed R8218:c749ea4a43ec: refactor: Change muscle force vector to represent muscular activation. (authored by boubat).

boubat committed R8218:e5acaf18666b: Merge branch '3d_slicer_humerus_measurements' into 'master' (authored by boubat).

boubat committed R8218:ec80aabdeaff: feat: Add method to export a Sphere to .ply file thanks to BinarySphere. (authored by boubat).

boubat committed R8218:6c84779ab0bc: feat: Add method to find new 3DSlicer folder of SCase. (authored by boubat).

boubat committed R8218:16f1b22821e2: feat: Add method to load humerus landmakrs from 3DSlicer markups files. (authored by boubat).

boubat committed R8218:b523d4a048f5: feat: Add method to export humeral head fitted sphere to .ply file. (authored by boubat).

boubat committed R8218:f48c16da915d: Merge branch 'binary_volumes' into 'master' (authored by boubat).

boubat committed R8218:4a5672b6ac30: feat: Add WIP side project about binary volumes in utils. (authored by boubat).

boubat committed R8218:90907cc260b3: refactor: Remove deprecated property. (authored by boubat).

boubat committed R8218:e5cc35f4bed9: refactor: Remove disposable argument and fix char/string concatenation. (authored by boubat).

boubat committed R8218:bb709a4b5cec: Merge branch 'rotator_cuff' into 'master' (authored by boubat).

boubat committed R8218:47c2d59842b9: refactor: Change shoulder.muscles for shoulder.rotatorCuff. (authored by boubat).

boubat committed R8218:afa310747b4f: refactor: Divide measure method into three. (authored by boubat).

boubat committed R8218:fb2909401cda: fix: Fix char/string issue. (authored by boubat).

boubat committed R8218:bab625d091e5: feat: Add measurement of rotator cuff antero-posterior imbalance angle. (authored by boubat).

boubat committed R8218:eb0fc6f6f92a: refactor: Make plot method ShoulderCasePlotter compliant. (authored by boubat).

boubat committed R8218:04648c7bb765: feat: Add plot methods to RotatorCuff. (authored by boubat).

boubat committed R8218:5eff374d8477: feat: Add Humerus plot method. (authored by boubat).

boubat committed R8218:02ce2d5800e0: feat: Add muscle measurement of insertion and force vector. (authored by boubat).

boubat committed R8218:bed4780af6f2: fix: Add missing coefficient. (authored by boubat).

boubat committed R8218:158ebe27c403: refactor: Change Muscle construction and add properties summary. (authored by boubat).

boubat committed R8218:0cfd68911b42: fix: Change folder name. (authored by boubat).

boubat committed R8218:490ef61530c7: feat: Implement RotatorCuff object and add it to Shoulder. (authored by boubat).

boubat committed R8218:0b92d3ff947e: refactor: Change data path handling in Muscles related objects. (authored by boubat).

boubat committed R8218:e3ee0285f235: refactor: Change char array for string. (authored by boubat).

boubat committed R8218:5fe8ec4aa946: Merge branch 'reveal_objects_references' into 'master' (authored by boubat).

boubat committed R8218:6b09b54993f4: refactor: Change the accessibility of objects' properties refering to other… (authored by boubat).

boubat committed R8218:2fd89454f2d1: Merge branch 'data_path' into 'master' (authored by boubat).

boubat committed R8218:b6e0aee02633: refactor: Make the Shoulder objects and children simpler and remove the need… (authored by boubat).

boubat committed R8218:6b6233bb1687: refactor: Change data paths from being properties to method which remove the… (authored by boubat).

boubat committed R8218:e504ac2a0db1: Merge branch 'sphere_polar_tangent_point' into 'master' (authored by boubat).

boubat committed R8218:4f23238a0e74: fix: Fix error in minus() when using an array as input. (authored by boubat).

boubat committed R8218:ff30e63892ee: feat: Add Sphere polar tangent point finding method. (authored by boubat).

boubat committed R8218:18386f62dc97: refactor: Change Sphere construction to be intialisable with center and radius. (authored by boubat).

boubat committed R8218:1f6f1a05884b: refactor: Change muscle centroid and contour methods ownership from… (authored by boubat).

boubat committed R8218:5de2a22ec3fb: Merge branch 'vector_features_extension' into 'master' (authored by boubat).

boubat committed R8218:8672dc70095e: feat: Add three features to Vector. (authored by boubat).

boubat committed R8218:fb70e1933436: Merge branch 'muscles_centroid_plot' into 'master' (authored by boubat).

boubat committed R8218:d88534adf210: feat: Add rotator cuff muscles contour and centroid 3D plots. (authored by boubat).

boubat committed R8218:68fbf12d1bb0: Merge branch 'dicom_slice_pixel_coordinates' into 'master' (authored by boubat).

boubat committed R8218:597bb3fcfc31: feat: Add methods to export the whole SCases data into a table and save it in a… (authored by Pezhman Eghbalishamsabadi <pezhman.eghbalishamsabadi@epfl.ch>).

boubat committed R8218:1835cad42086: Merge branch 'pezhman_excelExport' into 'master' (authored by boubat).

boubat committed R8218:760312dc35f9: fix: Remove typos. (authored by boubat).

boubat committed R8218:6679286a66d7: Merge branch 'humeral_subluxation_index' into 'master' (authored by boubat).

boubat committed R8218:1145767ab72d: feat: Add 3D humeral subluxation index measurement. (authored by boubat).

boubat committed R8218:6f25c23e0c4e: feat: Add glenoid BETA angle measurement. (authored by boubat).