refactor:Muscles: Change property's name

refactor:Muscles:plot: Update files path.

fix:Muscles: Fix typos and errors in new degeneration functions

refactor:Muscles: Extract methods from muscles.degeneration dedicated to the…

refactor:Muscles:newDegeneration: Extract methods that save the results of…

refactor:Muscles:newDegeneration: Extract slicing and segmenting methods from…

feat:Muscles:newDegeneration: Save the image to be segmented in the case's…

refactor:Muscles:newDegeneration: Extract the call to python commands into a…

refactor:Muscles:newDegeneration: Extract a method to clean the rotator cuff…

feat:Muscles: Add a slicedPixelSpacing property.

feat:Muscles:newDegeneration: Add a function to save the slice where it's…

feat:Muscles:plot Implement the plot for this class, displaying the segmented…

refactor:Muscles: Add some properties to prepare the refactoring of Muscles.

refacetor:Muscles:newDegeneration: Sketch the future refactored degeneration…

refactor:DicomVolume: Update and move functions to separate files for the three…

fix:DicomVolumeNormaliser:setMinimalResolutionDividedBy: Prevent the resolution…

feat:DicomVolumeSlicer: Implement the crop() method. Debug ongoing on other…

feat:DicomeVolumeSlicer: Implement the measureSlicedPixelSpacings method

refactor:DicomVolumeNormaliser: Add a division factor to setMinimalResolution().

feat:DicomVolume: Add a method to get the point coordinates given the point…

Merge branch 'Bashardoust_SystCoord'

feat:DicomeVolumeSlicer: Implement the prototype of crop and rotation methods…

perf:Plane:plot: Change the radius argument to be an optional argument

refactor:DicomVolumeNormaliser: Delete deprecated normalising method

perf:Plane:plot: Update the plot method of Plane to show a circle

feat:Circle: Add a Circle object

feat:Plane: Implement the plot method for the PLane class

extract:DicomVolume: Extract methods from DicomeVolumeSlicer class to new…

refactor:Muscles&DicomeVolumeSlicer: Extract the last methods added to the…

feat:Muscles: Add functions to get a slice of a dicom volume

files: Create the @Muscles folder for the Muscles object

feat:ShoulderCaseLoader:loadCase: Add the root path and the dicom path to the…

fix:Shoulder.m:plot: Change the glenoid sphere center for explicit attribution

feat:CoordinateSystem.m: Add a new function to express local coordinates in…

refactor:plotSCase.m: Update the way of getting config file data.

refactor:plotSCase.m: Adapt the plotSCase.m function to the new ShoulderCase.

refactor:ShoulderCase.m:plot: Change the ShoulderCase.plot method to call the…

refactor:Shoulder.m:plot: Move the plot method from the ShoulderCase object to…

feat: Add the MethodsMonitor abstract class that monitor and programm child…

feat: Add a function that substract the elements of cell array from another…

feat: Add a format.string constant property to Timer object.

Merge branch 'boubat'

fix: Adapt SCaseIDParser to new version of FileExtractor

perf: Assert validity of inputs and output of FileExtractor

perf: Change the output of FileExtractor object to directly return the variable…

fix: Orient the glenoid.centerLine toward ML

fix: Change the use of exist() for dir()

fix: Reduce the required number of groove points in scapula CoordinateSystem

doc: Update the description of measureSCase arguments and its examples

fix: Re-create the glenoid.walch property and change the auto-measurements…

fix: Comment out outdated reference to glenoid.walch

fix: Change reference to glenoid.SCase in glenoid.calcDensity

fix: Change the reference to glenoid.SCase for glenoid.scapula.shoulder.SCase…

perf: Add more try/catch in measurements of measureSCase and log the error…

fix: Change the access of the contructor of Glenoid

fix: Add a missing 'end' statement in GlenoidManual

refactor: Change the way the other objects handle the new GlenoidAuto/Manual…

fix: Correct typo

refactor: Extract one abstract and two manual/auto object out of the Glenoid…

fix: Add try/catch in measureSCase measurements to prevent measureSCase from…

refactor: Change openConfigFile function for ConfigFileExtractor.getVariable…

feat: Add the current folder and subfolders in MATLAB path at the beginning of…

fix: Change python path dependencies to be chosen in config file for muscles.

doc: Update measurSCase header to describe the new arguments handling

refactor: Delete the output of glenoid.measureVersionAndInclination

refactor: Delete CT2Scapula method, outdated by the CoordinateSystem.express…

fix: Avoid SCase creation error in measureSCase.m

refactor: Implement the glenoid.morphology method to call the dedicated…

refactor: Extract a glenoid method to measure its center line

fix: Change methods' names to fit their files' names

refactor: Extract a method to measure glenoid version and inclination values

refactor: Change two glenoid methods' names that gave useless informations

feat: Add a method to measure the glenoid antero-superior angle with PCA

refactor: Extract a method from glenoid.morphology that expresses the glenoid…

feat: Add a function to project vectors on a vector

feat: Add methods to project points on the three planes spaned by a…

refactor: Extract methods to set glenoid width and height with PCA

refactor: Change variable name in glenoid.measureCenter.m

refactor: Extract method to measure glenoid depth

refactor: Extrcat

refactor: Split measureSCase into three part

refactor: Same as previous commit

refactor: Change measureSCase to handle the new ShoulderCase properties

refactor: Change the references to SCase for references to the direct parent…

refactor: Split the shoulder property into two new shoulderManual and…

refactor: Change the implementation of getDataRootPath to use the FileExtractor…

refactor: Split Scapula class into one abstract and two concrete classes

feat: Add classes to get text from files

refactor: Specify method's scope in method's name

refactor: Give properties their values with config file instead of hard code

refactor: Split Shoulder class into one abstract and two concrete classes

feat: Add a method to load a ShoulderCase

refactor: Change methods name containing 'SCase' with 'Case'

refactor: Change names of classes

refactor: Remove the future poltergeist class SCaseDB

feat: Add a Logger class to handle log files

refactor: Remove the obsolete TimerData class

feat: Add a class that implements linked lists

refactor: Change the global property type from containers.Map to LinkedList and…

feat: Add a function that asserts that a text matches an expression