boubat committed R8218:8566b2f9bc32: Merge branch 'readme_display' into 'master' (authored by boubat).

boubat committed R8218:feea5a4a337f: Merge branch 'variables_description' into 'master' (authored by boubat).

boubat committed R8218:5a906fe7379d: Merge branch 'measureSCase_review' into 'master' (authored by boubat).

boubat committed R8218:3c36ee29f9bf: Merge branch 'patient_data_review' into 'master' (authored by boubat).

boubat committed R8218:42f4a3b4a9ce: Merge branch 'imbalance_angle_orientation' into 'master' (authored by boubat).

boubat committed R8218:25c64e6109f8: Merge branch 'export_variables_review' into 'master' (authored by boubat).

boubat committed R8218:99cfeb7a9775: Merge branch 'imbalance_angle_extension' into 'master' (authored by boubat).

boubat committed R8218:658834f1cb1b: refactor: update method to new landmarks (authored by boubat).

boubat committed R8218:9eefa846dc31: Merge branch 'humerus_landmarks' into 'master' (authored by boubat).

boubat committed R8218:53971eef95f7: refactor: update method with new landmarks structure (authored by boubat).

boubat committed R8218:a850000c9cd2: Merge branch 'muscle_divisions_homogenisation' into 'master' (authored by boubat).

boubat committed R8218:8298a5794395: Merge branch 'continuous_insertions' into 'master' (authored by boubat).

boubat committed R8218:67fcbcdcc8e3: fix: fix typo (authored by boubat).

boubat committed R8218:1cd277fb4c11: Merge branch 'config_modification' into 'master' (authored by boubat).

boubat committed R8218:f9e3ea44f5b4: Merge branch 'slicer_tools' into 'master' (authored by boubat).

boubat committed R8218:7685b96f7577: Merge branch 'rotator_cuff_segmentation_config' into 'master' (authored by boubat).

boubat committed R8218:8b040d8ab736: Merge branch 'insertions_ring' into 'master' (authored by boubat).

boubat committed R8218:f18477207b2f: Merge branch 'amira_landmarks_side' into 'master' (authored by boubat).

boubat committed R8218:cc98f1adc6f8: Merge branch 'muscle_insertion_visualisation' into 'master' (authored by boubat).

boubat committed R8218:e7ae2c25e263: Merge branch 'muscle_insertion_lateralisation' into 'master' (authored by boubat).

boubat committed R8218:60778b05cfb6: fix: fix scatter plot marker attributes (authored by boubat).

boubat committed R8218:0dde3510025e: Merge branch 'muscle_insertions_review' into 'master' (authored by boubat).

boubat committed R8218:dd9b02b57467: Merge branch 'rotator_cuff_imbalance' into 'master' (authored by boubat).

boubat committed R8218:7a7436dee58e: Merge branch 'utils_refactor' into 'master' (authored by boubat).

boubat committed R8218:3e198561271d: fix: fix typo in iterator creation (authored by boubat).

boubat committed R8218:83a2130902b0: Merge branch 'muscle_contact_point_review' into 'master' (authored by boubat).

boubat committed R8218:d32ee1bcc847: Merge branch 'humerus_insertions' into 'master' (authored by boubat).

boubat committed R8218:8d1aa85f2ffd: Merge branch 'muscle_clean' into 'master' (authored by boubat).

boubat committed R8218:77d59a456131: Merge branch 'feat_muscle_subdivisions' into 'master' (authored by boubat).

boubat committed R8218:282b38575986: fix: set correct iterator range (authored by boubat).

boubat committed R8218:a262bb9dd300: fix: fix misdivisions of masks including the 0 angle (authored by boubat).

boubat committed R8218:d56230c45d9b: fix: change iterator to follow iterated array (authored by boubat).

boubat committed R8218:12dd8059c31e: refactor: change property access (authored by boubat).

boubat committed R8218:586913c7c5b5: fix: change method to work with 1 point array (authored by boubat).

boubat committed R8218:e74a03f54313: feat: implement slice point finder (authored by boubat).

boubat committed R8218:897e889584bc: refactor: update method to use muscle subdivisions (authored by boubat).

boubat committed R8218:ba3bb649febc: refactor: update method to use muscle subdivisions (authored by boubat).

boubat committed R8218:2e51341bed57: fix: change method used (authored by boubat).

boubat committed R8218:455ac22de2b1: fix: make element consistent with matlab array indexing (authored by boubat).

boubat committed R8218:c59fda2034c3: refactor: increase function scope (authored by boubat).

boubat committed R8218:6f9a8065808b: feat: implement Muscle subdivision (authored by boubat).

boubat committed R8218:2422a095c9ee: Merge branch 'feat_muscle_subdivision' into 'master' (authored by boubat).

boubat committed R8218:57a091c63bf8: Merge branch 'refactor_muscle_measurement' into 'master' (authored by boubat).

boubat committed R8218:6c0544dfd86c: Merge branch 'feat_humerus_3d_index' into 'master' (authored by boubat).

boubat committed R8218:5f4ceb217c3a: Merge branch 'refactor_glenoid_data_loading' into 'master' (authored by boubat).

boubat committed R8218:8bbb6e46983b: refactor: update shoulder case plot methods to handle right and left shoulders (authored by boubat).

boubat committed R8218:149f8321fbc1: refactor: update scapula differences plot to use sided shoulders (authored by boubat).

boubat committed R8218:c2240235c869: Merge branch 'plot_review' into 'master' (authored by boubat).

boubat committed R8218:267d777c8e23: refactor: update rotator cuff plot methods (authored by boubat).

boubat committed R8218:a269cbf6b3ec: Merge branch 'muscle_measurements_update' into 'master' (authored by boubat).

boubat committed R8218:f1321e57d854: Merge branch 'dicom_slice_coordinates_review' into 'master' (authored by boubat).

boubat committed R8218:9339b0bfce73: Merge branch 'measurements_revision' into 'master' (authored by boubat).

boubat committed R8218:657b1a04e841: Merge branch 'time_log_execution' into 'master' (authored by boubat).

boubat committed R8218:b588b6334874: Merge branch 'logger_revision' into 'master' (authored by boubat).

boubat committed R8218:047be108ed3b: Merge branch 'export_data_revision' into 'master' (authored by boubat).

Matthieu Boubat (lbovenus) <matthieu.boubat@alumni.ch> committed R8218:a69e46bd180b: refactor: Change concatenation for table outer join. (authored by boubat).

Matthieu Boubat (lbovenus) <matthieu.boubat@alumni.ch> committed R8218:1cb19cfdc519: feat: Export two different rows for auto/manual SCase data. (authored by boubat).

Matthieu Boubat (lbovenus) <matthieu.boubat@alumni.ch> committed R8218:29871e28c498: refactor: Remove extra '_' in some variable names. (authored by boubat).

boubat committed R8218:ca5287da3e44: refactor: Change concatenation for table outer join. (authored by boubat).

boubat committed R8218:6d7188f619b3: refactor: Remove extra '_' in some variable names. (authored by boubat).

boubat committed R8218:d6b636d0a9c1: feat: Export two different rows for auto/manual SCase data. (authored by boubat).

boubat committed R8218:5407f618736d: Merge branch 'load_normal_pathological' into 'master' (authored by boubat).

boubat committed R8218:446df2f92a11: Merge branch 'clean' into 'master' (authored by boubat).

boubat committed R8218:71604e1d9392: refactor: Remove deprecated classes and move general purpose classes to the… (authored by boubat).

boubat committed R8218:f23931f03d50: Merge branch 'config_file_revision' into 'master' (authored by boubat).

boubat committed R8218:0a6fd799e477: feat: Add function to parse a config json file. (authored by boubat).

boubat committed R8218:fe6d651e72db: fix: Change default config file to work with updated code. (authored by boubat).

boubat committed R8218:c99e6574cba5: refactor: Update config extraction method across system. (authored by boubat).

boubat committed R8218:94b5f04f6e1d: refactor: Change default config creation to create a config.json file. (authored by boubat).

boubat committed R8218:e687b8260c8d: Merge branch 'nathan_slices_filter' into 'master' (authored by boubat).

boubat committed R8218:7aa47bcee050: Merge branch 'load_them_all' into 'master' (authored by boubat).

boubat committed R8218:98b1c8372890: Merge branch 'multiple_case_loading' into 'master' (authored by boubat).

boubat committed R8218:2cadbe59756a: Merge branch 'slice_pixel_coordinates_fix' into 'master' (authored by boubat).

boubat committed R8218:df3793e68a93: Merge branch 'humerus_side' into 'master' (authored by boubat).

boubat committed R8218:4c31af5c2cdb: Merge branch 'rotator_cuff_slice_parameters' into 'master' (authored by boubat).

boubat committed R8218:0e430a512032: Merge branch 'load_measure_refactor' into 'master' (authored by boubat).

boubat committed R8218:64c30663f9ab: refactor: Make auto scapula data loading prioritize current shoulder side. (authored by boubat).

boubat committed R8218:fca61af81212: refactor: Extract amira/slicer data loading methods from general load method. (authored by boubat).

boubat committed R8218:518851eaf0c0: refactor: Change char arrays for strings. (authored by boubat).

boubat committed R8218:460092f903be: feat: Add methods that bundle several submethods. (authored by boubat).

boubat committed R8218:a941f25d8be6: Merge branch 'teres_minor_imbalance' into 'master' (authored by boubat).

boubat committed R8218:8ca3dd3334e9: refactor: Change legend location of rotator cuff segmentations 2D plot. (authored by boubat).

boubat committed R8218:46649b7ec7f4: feat: Add Teres Minor humeral head insertion and force influence on antero… (authored by boubat).

boubat committed R8218:bdd284b71c15: Merge branch 'centroid_plot' into 'master' (authored by boubat).

boubat committed R8218:7a96744b4d4e: feat: Add rotator cuff muscles centroid plot to segmentations plot. (authored by boubat).

boubat committed R8218:66b76f663e5c: Merge branch 'dicom_slicer_filter' into 'master' (authored by boubat).

boubat committed R8218:896a4ab346a3: feat: Add gaussian filter for hard kernel CT scans. (authored by boubat).

boubat committed R8218:ca3a46b334f0: Merge branch 'muscles_force_vector_modification' into 'master' (authored by boubat).

boubat committed R8218:c749ea4a43ec: refactor: Change muscle force vector to represent muscular activation. (authored by boubat).

boubat committed R8218:e5acaf18666b: Merge branch '3d_slicer_humerus_measurements' into 'master' (authored by boubat).

boubat committed R8218:ec80aabdeaff: feat: Add method to export a Sphere to .ply file thanks to BinarySphere. (authored by boubat).

boubat committed R8218:6c84779ab0bc: feat: Add method to find new 3DSlicer folder of SCase. (authored by boubat).

boubat committed R8218:16f1b22821e2: feat: Add method to load humerus landmakrs from 3DSlicer markups files. (authored by boubat).

boubat committed R8218:b523d4a048f5: feat: Add method to export humeral head fitted sphere to .ply file. (authored by boubat).

boubat committed R8218:f48c16da915d: Merge branch 'binary_volumes' into 'master' (authored by boubat).

boubat committed R8218:4a5672b6ac30: feat: Add WIP side project about binary volumes in utils. (authored by boubat).

boubat committed R8218:90907cc260b3: refactor: Remove deprecated property. (authored by boubat).

boubat committed R8218:e5cc35f4bed9: refactor: Remove disposable argument and fix char/string concatenation. (authored by boubat).

boubat committed R8218:bb709a4b5cec: Merge branch 'rotator_cuff' into 'master' (authored by boubat).

boubat committed R8218:47c2d59842b9: refactor: Change shoulder.muscles for shoulder.rotatorCuff. (authored by boubat).