Diffusion ShoulderDB_ImportSegmentMeasureAnalyze (aterrier-plotUpdate) History

History
aterrier-plotUpdate2c2b3728cbfce12afe8d20d…

Apr 14 2021

Merge branch 'muscles_centroid_plot' into 'master'
fb70e1933436
·boubat on Apr 14 2021, 17:31.
feat: Add rotator cuff muscles contour and centroid 3D plots.
d88534adf210
·boubat on Apr 14 2021, 17:28.
Merge branch 'dicom_slice_pixel_coordinates' into 'master'
68fbf12d1bb0
·boubat on Apr 14 2021, 16:45.
feat: Add the slice's pixel coordinates export.
3cb9b325756b
·Matthieu Boubat (lbovenus) on Apr 14 2021, 16:42.

Apr 13 2021

Merge branch 'pezhman_excelExport' into 'master'
1835cad42086
·boubat on Apr 13 2021, 13:53.
feat: Add methods to export the whole SCases data into a table and save it in a…
597bb3fcfc31
·Pezhman Eghbalishamsabadi / boubat on Apr 13 2021, 13:53.

Apr 8 2021

fix: Remove typos.
760312dc35f9
·boubat on Apr 8 2021, 19:17.
Merge branch 'humeral_subluxation_index' into 'master'
6679286a66d7
·boubat on Apr 8 2021, 18:21.
feat: Add 3D humeral subluxation index measurement.
1145767ab72d
·boubat on Apr 8 2021, 18:19.
Merge branch 'glenoid_beta_angle' into 'master'
7724fb5169f7
·boubat on Apr 8 2021, 17:24.
feat: Add glenoid BETA angle measurement.
6f25c23e0c4e
·boubat on Apr 8 2021, 17:23.
Merge branch 'vector_features_extension' into 'master'
a858d2175d15
·boubat on Apr 8 2021, 17:14.
feat: Add three new features to Vector.
a52c52ee0465
·boubat on Apr 8 2021, 17:13.
Merge branch 'glenoid_rim_inclination' into 'master'
e4f6836889be
·boubat on Apr 8 2021, 16:05.
feat: Add glenoid rim inclination measurement.
a03fb9943223
·boubat on Apr 8 2021, 16:05.
Merge branch 'glenoid_retroversion' into 'master'
9156ef991edf
·boubat on Apr 8 2021, 15:34.
feat: Add glenoid retroversion measurement.
9341c9dbeba3
·boubat on Apr 8 2021, 15:31.
Merge branch 'vector_features_extension' into 'master'
040981f51e25
·boubat on Apr 8 2021, 14:09.
feat: Add three features to the Vector class.
01f18b8b1139
·boubat on Apr 8 2021, 14:07.
Merge branch 'glenoid_infero_superior_line' into 'master'
9ead59500bba
·boubat on Apr 8 2021, 13:18.
feat: Add the measure of glenoid infero superior line.
d7e99d4c0d68
·boubat on Apr 8 2021, 13:17.
Merge branch 'glenoid_postero_anterior_line' into 'master'
96b451b62b22
·boubat on Apr 8 2021, 13:05.
feat: Add the measure of glenoid postero anterior line.
71a2298f35d1
·boubat on Apr 8 2021, 13:05.
Merge branch 'friedmans_line_modification' into 'master'
b3f6fa24910b
·boubat on Apr 8 2021, 12:13.
refactor: Modify Friedman's line to be a Vector instance.
47bcd381205b
·boubat on Apr 8 2021, 12:10.
Merge branch 'vector_class' into 'master'
1e15fcb346eb
·boubat on Apr 8 2021, 12:02.
feat: Add a basic Vector class.
20208d0985c4
·boubat on Apr 8 2021, 11:53.

Apr 1 2021

Merge branch 'musclesCentroid' into 'master'
7b3df2400ac2
·boubat on Apr 1 2021, 17:57.
feat: Add functions to measure muscles centroid and contour coordinates in…
56fd32646096
·Matthieu Boubat (lbovenus) on Apr 1 2021, 17:55.
feat: Add two functions to read muscle related segmentation mask and slice…
9fe70821ddb6
·Matthieu Boubat (lbovenus) on Apr 1 2021, 17:54.
refactor: Add missing pixel coordinates save.
23f49df7c6a9
·Matthieu Boubat (lbovenus) on Apr 1 2021, 17:53.
Merge branch 'slicePixelsCoordinates' into 'master'
75435e547e69
·boubat on Apr 1 2021, 14:46.
feat: Finish slice pixel coordinates extraction implementation.
cd7e29c50566
·Matthieu Boubat (lbovenus) on Apr 1 2021, 14:43.
feat:WIP Add slice's pixel coordinates export.
d58ec00b5bac
·boubat on Apr 1 2021, 12:38.

Mar 23 2021

Merge branch 'glenoidRim' into 'master'
b82e54c735ef
·boubat on Mar 23 2021, 16:49.
feat: Add a method to find the extreme points of the glenoid rim according to…
792eb24bde0e
·boubat on Mar 23 2021, 16:06.
feat: Add methods to find the rim points of glenoids.
b001c7a73902
·boubat on Mar 23 2021, 16:02.

Mar 22 2021

Merge branch 'friedmansLine' into 'master'
6f48271545d0
·boubat on Mar 22 2021, 16:17.
feat: Implement the measure of the Friedman's scapular line.
1b7c0b38b029
·boubat on Mar 22 2021, 16:06.

Feb 16 2021

refactor: Remove anonymisation code.
b04bf8ae5867
·Matthieu Boubat (lbovenus) on Feb 16 2021, 10:43.
refactor: Change logger creation.
91b87400caa9
·Matthieu Boubat (lbovenus) on Feb 16 2021, 10:33.
refactor: Change the output of ShoudlerCaseLoader.loadAllCases() from cell…
079b06c8538d
·Matthieu Boubat (lbovenus) on Feb 16 2021, 10:20.

Jan 12 2021

feat: Add the anonymisation of all the files containing the IPP in the case…
c4f2d93b1eb0
·Matthieu Boubat (lbovenus) on Jan 12 2021, 15:24.

Jan 11 2021

refactor: Change Logger class last lines to show stop time.
8ac49aeeca7c
·Matthieu Boubat (lbovenus) on Jan 11 2021, 12:40.

Dec 11 2020

refactor: Change try/catch command locations in anonymiseDatabase().
69bc850cffd8
·Matthieu Boubat (lbovenus) on Dec 11 2020, 17:24.
refactor: Change properties order in getProperties() method.
62cde38bf596
·Matthieu Boubat (lbovenus) on Dec 11 2020, 17:23.
feat: Add a function to run anonymisation of the whole database.
e2f6d712f3ff
·Matthieu Boubat (lbovenus) on Dec 11 2020, 16:29.
refactor: Update ShoulderCaseAnonymiser.
5d659a6abe89
·Matthieu Boubat (lbovenus) on Dec 11 2020, 16:28.
feat: Fully implement ShoulderCaseAnonymiser.
20bc822d890c
·boubat on Dec 11 2020, 15:01.

Dec 10 2020

refactor: Allow SCase parser and loader to use string besides char array.
384fdd222785
·boubat on Dec 10 2020, 19:19.
feat: Add ShoulderCaseAnonymiser class and implement dicom anonymisation.
933aae66307d
·boubat on Dec 10 2020, 19:18.

Sep 24 2020

fix: Revert last modification and add alternate fix to calcDensity().
a4fcd36437f5
·boubat on Sep 24 2020, 12:24.

Sep 22 2020

fix: Remove useless code that raised errors.
2410f329af66
·boubat on Sep 22 2020, 15:36.

Sep 14 2020

doc: Remove repository hyperlink in README.
cadc91e3ddda
·boubat on Sep 14 2020, 15:49.

Sep 10 2020

fix: Change wrong array indices in calcDensity.
bf01a05daccc
·boubat on Sep 10 2020, 21:55.
Merge branch 'master' of https://gitlab.epfl.ch/shoulder-db/shoulder-db-import…
1f61c4b2b05e
·Matthieu Boubat (lbovenus) on Sep 10 2020, 13:32.
refactor: Remove error logging from inside Nathan algotihm.
b5834eb2162c
·Matthieu Boubat (lbovenus) on Sep 10 2020, 13:30.

Sep 8 2020

Extended author list in README
a28ebffe9ddf
·aterrier on Sep 8 2020, 21:55.

Sep 7 2020

Merge branch 'master' of gitlab.epfl.ch:shoulder-db/shoulder-db-import-measure
c230b863a203
·aterrier on Sep 7 2020, 17:38.
Extended author list in README
453d195f6b1b
·aterrier on Sep 7 2020, 17:10.
Extended author list in README
81a8e0e727db
·aterrier on Sep 7 2020, 12:31.
Extended author list in README
1cddcd8d3f3c
·aterrier on Sep 7 2020, 11:50.

Sep 4 2020

feat: Add isempty() method to Sphere class and open class accessibility to…
782d0b035f13
·boubat on Sep 4 2020, 14:52.
feat: Add and document a setup() function for the whole system.
506c043e4ebd
·boubat on Sep 4 2020, 11:18.

Aug 31 2020

refactor: Update measureSCase with new muscle file names.
4e54dfa61f58
·boubat on Aug 31 2020, 11:47.
refactor: Add the '_Mask' file terminology in the MuscleMeasurer methods.
d8f3d531ec36
·boubat on Aug 31 2020, 11:46.
refactor: Update muscles plot method with nes file names used.
d542f8cdde1f
·boubat on Aug 31 2020, 11:45.

Aug 17 2020

refactor: Rename and document the MusclesContainer slicing methods.
bb01683906ed
·boubat on Aug 17 2020, 18:55.

Aug 14 2020

feat: Add a function to find the bounding box of a dicom set.
903ac534e00f
·boubat on Aug 14 2020, 14:42.

Aug 10 2020

refactor: Update plotSCase to use loadSCase.
e35bc7f64b27
·boubat on Aug 10 2020, 11:46.
feat: Add a function to directly load a ShoulderCase given its ID.
8b6e8bb99bb9
·boubat on Aug 10 2020, 11:46.

Aug 6 2020

refactor: (re)Add the selection of smooth dicom for rotator cuff slices.
3fa1591c88a9
·boubat on Aug 6 2020, 14:20.
fix: Change verified shoulder in configCamera.
86ab4c9fc0c3
·boubat on Aug 6 2020, 12:06.

Aug 5 2020

refactor: Modify zoom, light position and default scapula axes in configCamera.
0013fd4ddd1a
·boubat on Aug 5 2020, 18:59.
fix: Correct name string in MusclesContainer.plot().
bfa30844d304
·boubat on Aug 5 2020, 18:58.
fix: Prevent measured SCase ID to be different of requested SCase ID.
8c30e81af50d
·boubat on Aug 5 2020, 18:35.
refactor: Update measureSCase to MusclesContainers modifications.
b24363f680f3
·boubat on Aug 5 2020, 18:22.
refactor: Update ShoulderCase to SCaseIDParser modifications.
47af1ac7f80e
·boubat on Aug 5 2020, 18:21.
refactor: Change filename creation to use fullfile().
7568f1ca7ccd
·boubat on Aug 5 2020, 18:20.
refactor: Add arguments to MusclesContainer methods to choose combinations of…
be3f45097169
·boubat on Aug 5 2020, 18:19.
refactor: Change displayed scapula surface to be opaque.
453355cdf2e7
·boubat on Aug 5 2020, 18:17.
refactor: Change displayed scapula surface to be opaque. View axes are now from…
47a8997f16da
·boubat on Aug 5 2020, 18:16.

Aug 4 2020

feat: Add a method to sort scapula's groove points lateral to medial.
a7767961504a
·boubat on Aug 4 2020, 14:02.
refactor: Add a varargout and update docstring.
6f3d07bd7acf
·boubat on Aug 4 2020, 14:01.
refactor: Delete a few commands in ShoulderCasePlotter.plot().
9c2a857c1e10
·boubat on Aug 4 2020, 14:00.
refactor: Rename axes initialisation method and add custom toolbar.
01bf191f3e58
·boubat on Aug 4 2020, 13:59.
feat: Add new buttons to ShoulderCasePlotter.
77c8270f788b
·boubat on Aug 4 2020, 13:57.
feat: Add camera related methods to ShoulderCasePlotter.
3d688f719941
·boubat on Aug 4 2020, 13:56.
refactor: Make SoulderCase.plot return the ShoulderCasePlotter.
a6c0ef26a380
·boubat on Aug 4 2020, 13:54.

Jul 31 2020

refactor: Update shoulder case plot functions according to AT feddback.
997424434cad
·boubat on Jul 31 2020, 18:16.

Jul 30 2020

feat: Add methods to Scapula to export its landmakrs into its Amira folder.
59e8c1e80ec4
·boubat on Jul 30 2020, 11:02.
feat: Implement methods to export landmarks in Amira file.
d034858e1ceb
·boubat on Jul 30 2020, 11:01.

Jul 28 2020

refactor: Update the utilisation of UpdatableText by ShoulderCaseLoader.
fee8d639a92c
·boubat on Jul 28 2020, 19:03.
refactor: Update UpdatableText.
4f06f9735153
·boubat on Jul 28 2020, 18:53.
feat: Add a class to export auto landmarks.
764e10153ab1
·boubat on Jul 28 2020, 15:42.

Jul 24 2020

docs: Update README about visualisation of data.
92559b7f5765
·tag: v1.0.6
·boubat on Jul 24 2020, 18:28.

Jul 23 2020

refactor: Update measureSCase() to new method's name.
288180450d3c
·boubat on Jul 23 2020, 18:46.
refactor: Revert changes from last commit that alters measurements.
3b926a83c8d4
·boubat on Jul 23 2020, 18:27.
feat: Updates to work with muscles manual segmentations.
ef22a3fab2ab
·boubat on Jul 23 2020, 17:59.
refactor: Update plotSCase() function.
78ebcbd377d0
·boubat on Jul 23 2020, 16:39.

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History
aterrier-plotUpdate2c2b3728cbfce12afe8d20d…