Diffusion ShoulderDB_ImportSegmentMeasureAnalyze (aterrier-plotUpdate) History

History
aterrier-plotUpdate8c58bb4a0fd75be932b21a8…

Jun 4 2021

feat:WIP Implement function to recursively call a specific function on all the…
8c58bb4a0fd7
·Matthieu Boubat (lbovenus) / Matthieu Boubat (lbovenus) on Jun 4 2021, 13:59.
Merge branch 'time_log_execution' into 'master'
657b1a04e841
·boubat on Jun 4 2021, 13:56.
feat: add method to time and log the execution of a given function
bc0c35e90b4b
·Matthieu Boubat (lbovenus) on Jun 4 2021, 13:56.
Merge branch 'logger_revision' into 'master'
b588b6334874
·boubat on Jun 4 2021, 12:29.
refactor: add unactive Logger check before log writing and update doc
1ca45e44000b
·Matthieu Boubat (lbovenus) on Jun 4 2021, 12:27.
feat: make logger ubiquitous
49e72570841a
·Matthieu Boubat (lbovenus) on Jun 4 2021, 12:20.

Jun 2 2021

Update README.md
784b85a32bbb
·aterrier on Jun 2 2021, 21:13.

Jun 1 2021

Merge branch 'export_data_revision' into 'master'
047be108ed3b
·boubat on Jun 1 2021, 18:35.
refactor: Change concatenation for table outer join.
a69e46bd180b
·boubat / Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
feat: Export two different rows for auto/manual SCase data.
1cb19cfdc519
·boubat / Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
refactor: Remove extra '_' in some variable names.
29871e28c498
·boubat / Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
feat: Improve infinite recursion loop safeguard to any level of nested…
a3d392569110
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
doc: Remove typo in docstring.
91285749c26b
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
doc: Update README.
cbb1dc771c2f
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
doc: Update docstring.
d117fa36fbd6
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
refactor: Add optional argument list of cases and file saving. Update…
105cb28e074f
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
refactor: Change export function name and implementation.
6fe191783718
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
doc: Add docstring and update comments.
c8a2431e9c9b
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
feat: Add recursion and arguments parser.
a34105a3c73b
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
refactor: Finish implementation of objects tabulation function.
3390335c7340
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
refactor: Prevent forbiden table column name starting with '_'.
5287912fb246
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.
feat:WIP Add functions to automatically tabulate properties of any given object.
e606f6705785
·Matthieu Boubat (lbovenus) on Jun 1 2021, 18:01.

May 21 2021

Merge branch 'load_normal_pathological' into 'master'
5407f618736d
·boubat on May 21 2021, 11:40.
feat: Allow to load all normal or pathological cases.
6122fa8767f0
·Matthieu Boubat (lbovenus) on May 21 2021, 11:39.

May 20 2021

fix: Fix char/string bad mixing.
40a669da7e26
·Matthieu Boubat (lbovenus) on May 20 2021, 16:52.
Merge branch 'clean' into 'master'
446df2f92a11
·boubat on May 20 2021, 16:18.
refactor: Remove deprecated classes and move general purpose classes to the…
71604e1d9392
·boubat on May 20 2021, 16:11.
Merge branch 'config_file_revision' into 'master'
f23931f03d50
·boubat on May 20 2021, 15:34.
fix: Change default config file to work with updated code.
fe6d651e72db
·boubat on May 20 2021, 15:33.
refactor: Update config extraction method across system.
c99e6574cba5
·boubat on May 20 2021, 15:28.
refactor: Change default config creation to create a config.json file.
94b5f04f6e1d
·boubat on May 20 2021, 14:20.
feat: Add function to parse a config json file.
0a6fd799e477
·boubat on May 20 2021, 14:02.
Merge branch 'nathan_slices_filter' into 'master'
e687b8260c8d
·boubat on May 20 2021, 13:16.
refactor: Uncomment out the filtering of dicom volume.
5f7d12c9d877
·Matthieu Boubat (lbovenus) on May 20 2021, 13:07.

May 19 2021

Merge branch 'load_them_all' into 'master'
7aa47bcee050
·boubat on May 19 2021, 14:33.
refactor: Allow loadSCase to load all the cases with the argument '*'.
094a66095fcc
·Matthieu Boubat (lbovenus) on May 19 2021, 14:32.
Merge branch 'multiple_case_loading' into 'master'
98b1c8372890
·boubat on May 19 2021, 14:16.
feat: Allow to load multiple SCases from a list of SCaseID.
824eabc2dc38
·Matthieu Boubat (lbovenus) on May 19 2021, 14:15.
Merge branch 'slice_pixel_coordinates_fix' into 'master'
2cadbe59756a
·boubat on May 19 2021, 14:02.
refactor: Adapt pixel coordinates transformation for left side shoulder.
47e03f89908c
·Matthieu Boubat (lbovenus) on May 19 2021, 14:00.

May 7 2021

Merge branch 'humerus_side' into 'master'
df3793e68a93
·boubat on May 7 2021, 13:13.
refactor: Update methods to take into account new file names containing…
c972dfcc3ad1
·Matthieu Boubat (lbovenus) on May 7 2021, 13:12.

May 5 2021

fix: Fix wrong methods and properties names.
35a68cd60da1
·Matthieu Boubat (lbovenus) on May 5 2021, 18:29.
Merge branch 'rotator_cuff_slice_parameters' into 'master'
4c31af5c2cdb
·boubat on May 5 2021, 18:10.
refactor: Change slice size and position.
1e234606ba89
·Matthieu Boubat (lbovenus) on May 5 2021, 18:09.
Merge branch 'load_measure_refactor' into 'master'
0e430a512032
·boubat on May 5 2021, 17:47.
refactor: Make auto scapula data loading prioritize current shoulder side.
64c30663f9ab
·boubat on May 5 2021, 17:46.
feat: Add methods that bundle several submethods.
460092f903be
·boubat on May 5 2021, 17:44.
refactor: Extract amira/slicer data loading methods from general load method.
fca61af81212
·boubat on May 5 2021, 17:05.
refactor: Change char arrays for strings.
518851eaf0c0
·boubat on May 5 2021, 17:04.
Merge branch 'teres_minor_imbalance' into 'master'
a941f25d8be6
·boubat on May 5 2021, 17:00.
refactor: Change legend location of rotator cuff segmentations 2D plot.
8ca3dd3334e9
·boubat on May 5 2021, 16:52.
feat: Add Teres Minor humeral head insertion and force influence on antero…
46649b7ec7f4
·boubat on May 5 2021, 16:51.

Apr 28 2021

Merge branch 'centroid_plot' into 'master'
bdd284b71c15
·boubat on Apr 28 2021, 12:51.
feat: Add rotator cuff muscles centroid plot to segmentations plot.
7a96744b4d4e
·boubat on Apr 28 2021, 12:49.
Merge branch 'dicom_slicer_filter' into 'master'
66b76f663e5c
·boubat on Apr 28 2021, 12:42.
feat: Add gaussian filter for hard kernel CT scans.
896a4ab346a3
·boubat on Apr 28 2021, 11:32.

Apr 23 2021

Merge branch 'muscles_force_vector_modification' into 'master'
ca3a46b334f0
·boubat on Apr 23 2021, 13:42.
refactor: Change muscle force vector to represent muscular activation.
c749ea4a43ec
·boubat on Apr 23 2021, 13:41.

Apr 21 2021

Merge branch '3d_slicer_humerus_measurements' into 'master'
e5acaf18666b
·boubat on Apr 21 2021, 16:26.
feat: Add method to export humeral head fitted sphere to .ply file.
b523d4a048f5
·boubat on Apr 21 2021, 16:17.
feat: Add method to export a Sphere to .ply file thanks to BinarySphere.
ec80aabdeaff
·boubat on Apr 21 2021, 16:16.
feat: Add method to find new 3DSlicer folder of SCase.
6c84779ab0bc
·boubat on Apr 21 2021, 16:15.
feat: Add method to load humerus landmakrs from 3DSlicer markups files.
16f1b22821e2
·boubat on Apr 21 2021, 16:14.
Merge branch 'binary_volumes' into 'master'
f48c16da915d
·boubat on Apr 21 2021, 14:48.
feat: Add WIP side project about binary volumes in utils.
4a5672b6ac30
·boubat on Apr 21 2021, 14:44.
refactor: Remove disposable argument and fix char/string concatenation.
e5cc35f4bed9
·boubat on Apr 21 2021, 14:19.
refactor: Remove deprecated property.
90907cc260b3
·boubat on Apr 21 2021, 14:17.

Apr 16 2021

Merge branch 'rotator_cuff' into 'master'
bb709a4b5cec
·tag: v1.1.0
·boubat on Apr 16 2021, 16:24.
refactor: Change shoulder.muscles for shoulder.rotatorCuff.
47c2d59842b9
·boubat on Apr 16 2021, 16:17.
fix: Fix char/string issue.
fb2909401cda
·boubat on Apr 16 2021, 16:15.
refactor: Divide measure method into three.
afa310747b4f
·boubat on Apr 16 2021, 15:41.
feat: Add measurement of rotator cuff antero-posterior imbalance angle.
bab625d091e5
·boubat on Apr 16 2021, 15:24.
refactor: Make plot method ShoulderCasePlotter compliant.
eb0fc6f6f92a
·boubat on Apr 16 2021, 14:23.
fix: Add missing coefficient.
bed4780af6f2
·boubat on Apr 16 2021, 12:25.
feat: Add muscle measurement of insertion and force vector.
02ce2d5800e0
·boubat on Apr 16 2021, 12:24.
feat: Add Humerus plot method.
5eff374d8477
·boubat on Apr 16 2021, 10:43.
feat: Add plot methods to RotatorCuff.
04648c7bb765
·boubat on Apr 16 2021, 10:18.

Apr 15 2021

fix: Change variable names.
1356f5320c27
·Matthieu Boubat (lbovenus) on Apr 15 2021, 19:39.
feat: Implement RotatorCuff object and add it to Shoulder.
490ef61530c7
·boubat on Apr 15 2021, 19:22.
refactor: Change Muscle construction and add properties summary.
158ebe27c403
·boubat on Apr 15 2021, 19:19.
fix: Change folder name.
0cfd68911b42
·boubat on Apr 15 2021, 19:18.
refactor: Change char array for string.
e3ee0285f235
·boubat on Apr 15 2021, 19:17.
refactor: Change data path handling in Muscles related objects.
0b92d3ff947e
·boubat on Apr 15 2021, 18:09.
Merge branch 'reveal_objects_references' into 'master'
5fe8ec4aa946
·boubat on Apr 15 2021, 16:32.
refactor: Change the accessibility of objects' properties refering to other…
6b09b54993f4
·boubat on Apr 15 2021, 16:30.
Merge branch 'data_path' into 'master'
2fd89454f2d1
·boubat on Apr 15 2021, 16:19.
refactor: Make the Shoulder objects and children simpler and remove the need…
b6e0aee02633
·boubat on Apr 15 2021, 16:02.
refactor: Change data paths from being properties to method which remove the…
6b6233bb1687
·boubat on Apr 15 2021, 16:00.
Merge branch 'sphere_polar_tangent_point' into 'master'
e504ac2a0db1
·tag: v1.0.7
·boubat on Apr 15 2021, 13:02.
refactor: Change Sphere construction to be intialisable with center and radius.
18386f62dc97
·boubat on Apr 15 2021, 13:00.
feat: Add Sphere polar tangent point finding method.
ff30e63892ee
·boubat on Apr 15 2021, 12:59.
fix: Fix error in minus() when using an array as input.
4f23238a0e74
·boubat on Apr 15 2021, 12:57.

Apr 14 2021

refactor: Change muscle centroid and contour methods ownership from…
1f6f1a05884b
·boubat on Apr 14 2021, 19:12.
Merge branch 'vector_features_extension' into 'master'
5de2a22ec3fb
·boubat on Apr 14 2021, 18:39.
feat: Add three features to Vector.
8672dc70095e
·boubat on Apr 14 2021, 18:36.
Merge branch 'muscles_centroid_plot' into 'master'
fb70e1933436
·boubat on Apr 14 2021, 17:31.
feat: Add rotator cuff muscles contour and centroid 3D plots.
d88534adf210
·boubat on Apr 14 2021, 17:28.
Merge branch 'dicom_slice_pixel_coordinates' into 'master'
68fbf12d1bb0
·boubat on Apr 14 2021, 16:45.
feat: Add the slice's pixel coordinates export.
3cb9b325756b
·Matthieu Boubat (lbovenus) on Apr 14 2021, 16:42.

Historyaterrier-plotUpdate8c58bb4a0fd75be932b21a8…

Jun 4 2021

Jun 2 2021

Jun 1 2021

May 21 2021

May 20 2021

May 19 2021

May 7 2021

May 5 2021

Apr 28 2021

Apr 23 2021

Apr 21 2021

Apr 16 2021

Apr 15 2021

Apr 14 2021

History
aterrier-plotUpdate8c58bb4a0fd75be932b21a8…