Diffusion ShoulderDB_ImportSegmentMeasureAnalyze (master) History

History
master9ead59500bba69085341f07…

Apr 8 2021

Merge branch 'glenoid_infero_superior_line' into 'master'
9ead59500bba
·boubat on Apr 8 2021, 13:18.
feat: Add the measure of glenoid infero superior line.
d7e99d4c0d68
·boubat on Apr 8 2021, 13:17.
Merge branch 'glenoid_postero_anterior_line' into 'master'
96b451b62b22
·boubat on Apr 8 2021, 13:05.
feat: Add the measure of glenoid postero anterior line.
71a2298f35d1
·boubat on Apr 8 2021, 13:05.
Merge branch 'friedmans_line_modification' into 'master'
b3f6fa24910b
·boubat on Apr 8 2021, 12:13.
refactor: Modify Friedman's line to be a Vector instance.
47bcd381205b
·boubat on Apr 8 2021, 12:10.
Merge branch 'vector_class' into 'master'
1e15fcb346eb
·boubat on Apr 8 2021, 12:02.
feat: Add a basic Vector class.
20208d0985c4
·boubat on Apr 8 2021, 11:53.

Apr 1 2021

Merge branch 'musclesCentroid' into 'master'
7b3df2400ac2
·boubat on Apr 1 2021, 17:57.
feat: Add functions to measure muscles centroid and contour coordinates in…
56fd32646096
·Matthieu Boubat (lbovenus) on Apr 1 2021, 17:55.
feat: Add two functions to read muscle related segmentation mask and slice…
9fe70821ddb6
·Matthieu Boubat (lbovenus) on Apr 1 2021, 17:54.
refactor: Add missing pixel coordinates save.
23f49df7c6a9
·Matthieu Boubat (lbovenus) on Apr 1 2021, 17:53.
Merge branch 'slicePixelsCoordinates' into 'master'
75435e547e69
·boubat on Apr 1 2021, 14:46.
feat: Finish slice pixel coordinates extraction implementation.
cd7e29c50566
·Matthieu Boubat (lbovenus) on Apr 1 2021, 14:43.
feat:WIP Add slice's pixel coordinates export.
d58ec00b5bac
·boubat on Apr 1 2021, 12:38.

Mar 23 2021

Merge branch 'glenoidRim' into 'master'
b82e54c735ef
·boubat on Mar 23 2021, 16:49.
feat: Add a method to find the extreme points of the glenoid rim according to…
792eb24bde0e
·boubat on Mar 23 2021, 16:06.
feat: Add methods to find the rim points of glenoids.
b001c7a73902
·boubat on Mar 23 2021, 16:02.

Mar 22 2021

Merge branch 'friedmansLine' into 'master'
6f48271545d0
·boubat on Mar 22 2021, 16:17.
feat: Implement the measure of the Friedman's scapular line.
1b7c0b38b029
·boubat on Mar 22 2021, 16:06.

Feb 16 2021

refactor: Remove anonymisation code.
b04bf8ae5867
·Matthieu Boubat (lbovenus) on Feb 16 2021, 10:43.
refactor: Change logger creation.
91b87400caa9
·Matthieu Boubat (lbovenus) on Feb 16 2021, 10:33.
refactor: Change the output of ShoudlerCaseLoader.loadAllCases() from cell…
079b06c8538d
·Matthieu Boubat (lbovenus) on Feb 16 2021, 10:20.

Jan 12 2021

feat: Add the anonymisation of all the files containing the IPP in the case…
c4f2d93b1eb0
·Matthieu Boubat (lbovenus) on Jan 12 2021, 15:24.

Jan 11 2021

refactor: Change Logger class last lines to show stop time.
8ac49aeeca7c
·Matthieu Boubat (lbovenus) on Jan 11 2021, 12:40.

Dec 11 2020

refactor: Change try/catch command locations in anonymiseDatabase().
69bc850cffd8
·Matthieu Boubat (lbovenus) on Dec 11 2020, 17:24.
refactor: Change properties order in getProperties() method.
62cde38bf596
·Matthieu Boubat (lbovenus) on Dec 11 2020, 17:23.
feat: Add a function to run anonymisation of the whole database.
e2f6d712f3ff
·Matthieu Boubat (lbovenus) on Dec 11 2020, 16:29.
refactor: Update ShoulderCaseAnonymiser.
5d659a6abe89
·Matthieu Boubat (lbovenus) on Dec 11 2020, 16:28.
feat: Fully implement ShoulderCaseAnonymiser.
20bc822d890c
·boubat on Dec 11 2020, 15:01.

Dec 10 2020

refactor: Allow SCase parser and loader to use string besides char array.
384fdd222785
·boubat on Dec 10 2020, 19:19.
feat: Add ShoulderCaseAnonymiser class and implement dicom anonymisation.
933aae66307d
·boubat on Dec 10 2020, 19:18.

Sep 24 2020

fix: Revert last modification and add alternate fix to calcDensity().
a4fcd36437f5
·boubat on Sep 24 2020, 12:24.

Sep 22 2020

fix: Remove useless code that raised errors.
2410f329af66
·boubat on Sep 22 2020, 15:36.

Sep 14 2020

doc: Remove repository hyperlink in README.
cadc91e3ddda
·boubat on Sep 14 2020, 15:49.

Sep 10 2020

fix: Change wrong array indices in calcDensity.
bf01a05daccc
·boubat on Sep 10 2020, 21:55.
Merge branch 'master' of https://gitlab.epfl.ch/shoulder-db/shoulder-db-import…
1f61c4b2b05e
·Matthieu Boubat (lbovenus) on Sep 10 2020, 13:32.
refactor: Remove error logging from inside Nathan algotihm.
b5834eb2162c
·Matthieu Boubat (lbovenus) on Sep 10 2020, 13:30.

Sep 8 2020

Extended author list in README
a28ebffe9ddf
·aterrier on Sep 8 2020, 21:55.

Sep 7 2020

Merge branch 'master' of gitlab.epfl.ch:shoulder-db/shoulder-db-import-measure
c230b863a203
·aterrier on Sep 7 2020, 17:38.
Extended author list in README
453d195f6b1b
·aterrier on Sep 7 2020, 17:10.
Extended author list in README
81a8e0e727db
·aterrier on Sep 7 2020, 12:31.
Extended author list in README
1cddcd8d3f3c
·aterrier on Sep 7 2020, 11:50.

Sep 4 2020

feat: Add isempty() method to Sphere class and open class accessibility to…
782d0b035f13
·boubat on Sep 4 2020, 14:52.
feat: Add and document a setup() function for the whole system.
506c043e4ebd
·boubat on Sep 4 2020, 11:18.

Aug 31 2020

refactor: Update measureSCase with new muscle file names.
4e54dfa61f58
·boubat on Aug 31 2020, 11:47.
refactor: Add the '_Mask' file terminology in the MuscleMeasurer methods.
d8f3d531ec36
·boubat on Aug 31 2020, 11:46.
refactor: Update muscles plot method with nes file names used.
d542f8cdde1f
·boubat on Aug 31 2020, 11:45.

Aug 17 2020

refactor: Rename and document the MusclesContainer slicing methods.
bb01683906ed
·boubat on Aug 17 2020, 18:55.

Aug 14 2020

feat: Add a function to find the bounding box of a dicom set.
903ac534e00f
·boubat on Aug 14 2020, 14:42.

Aug 10 2020

refactor: Update plotSCase to use loadSCase.
e35bc7f64b27
·boubat on Aug 10 2020, 11:46.
feat: Add a function to directly load a ShoulderCase given its ID.
8b6e8bb99bb9
·boubat on Aug 10 2020, 11:46.

Aug 6 2020

refactor: (re)Add the selection of smooth dicom for rotator cuff slices.
3fa1591c88a9
·boubat on Aug 6 2020, 14:20.
fix: Change verified shoulder in configCamera.
86ab4c9fc0c3
·boubat on Aug 6 2020, 12:06.

Aug 5 2020

refactor: Modify zoom, light position and default scapula axes in configCamera.
0013fd4ddd1a
·boubat on Aug 5 2020, 18:59.
fix: Correct name string in MusclesContainer.plot().
bfa30844d304
·boubat on Aug 5 2020, 18:58.
fix: Prevent measured SCase ID to be different of requested SCase ID.
8c30e81af50d
·boubat on Aug 5 2020, 18:35.
refactor: Update measureSCase to MusclesContainers modifications.
b24363f680f3
·boubat on Aug 5 2020, 18:22.
refactor: Update ShoulderCase to SCaseIDParser modifications.
47af1ac7f80e
·boubat on Aug 5 2020, 18:21.
refactor: Change filename creation to use fullfile().
7568f1ca7ccd
·boubat on Aug 5 2020, 18:20.
refactor: Add arguments to MusclesContainer methods to choose combinations of…
be3f45097169
·boubat on Aug 5 2020, 18:19.
refactor: Change displayed scapula surface to be opaque.
453355cdf2e7
·boubat on Aug 5 2020, 18:17.
refactor: Change displayed scapula surface to be opaque. View axes are now from…
47a8997f16da
·boubat on Aug 5 2020, 18:16.

Aug 4 2020

feat: Add a method to sort scapula's groove points lateral to medial.
a7767961504a
·boubat on Aug 4 2020, 14:02.
refactor: Add a varargout and update docstring.
6f3d07bd7acf
·boubat on Aug 4 2020, 14:01.
refactor: Delete a few commands in ShoulderCasePlotter.plot().
9c2a857c1e10
·boubat on Aug 4 2020, 14:00.
refactor: Rename axes initialisation method and add custom toolbar.
01bf191f3e58
·boubat on Aug 4 2020, 13:59.
feat: Add new buttons to ShoulderCasePlotter.
77c8270f788b
·boubat on Aug 4 2020, 13:57.
feat: Add camera related methods to ShoulderCasePlotter.
3d688f719941
·boubat on Aug 4 2020, 13:56.
refactor: Make SoulderCase.plot return the ShoulderCasePlotter.
a6c0ef26a380
·boubat on Aug 4 2020, 13:54.

Jul 31 2020

refactor: Update shoulder case plot functions according to AT feddback.
997424434cad
·boubat on Jul 31 2020, 18:16.

Jul 30 2020

feat: Add methods to Scapula to export its landmakrs into its Amira folder.
59e8c1e80ec4
·boubat on Jul 30 2020, 11:02.
feat: Implement methods to export landmarks in Amira file.
d034858e1ceb
·boubat on Jul 30 2020, 11:01.

Jul 28 2020

refactor: Update the utilisation of UpdatableText by ShoulderCaseLoader.
fee8d639a92c
·boubat on Jul 28 2020, 19:03.
refactor: Update UpdatableText.
4f06f9735153
·boubat on Jul 28 2020, 18:53.
feat: Add a class to export auto landmarks.
764e10153ab1
·boubat on Jul 28 2020, 15:42.

Jul 24 2020

docs: Update README about visualisation of data.
92559b7f5765
·tag: v1.0.6
·boubat on Jul 24 2020, 18:28.

Jul 23 2020

refactor: Update measureSCase() to new method's name.
288180450d3c
·boubat on Jul 23 2020, 18:46.
refactor: Revert changes from last commit that alters measurements.
3b926a83c8d4
·boubat on Jul 23 2020, 18:27.
feat: Updates to work with muscles manual segmentations.
ef22a3fab2ab
·boubat on Jul 23 2020, 17:59.
refactor: Update plotSCase() function.
78ebcbd377d0
·boubat on Jul 23 2020, 16:39.
refactor: Correct displayed sentence.
85705b4acfc2
·boubat on Jul 23 2020, 16:37.
refactor: Update classes in order to work with ShoulderCasePlotter.
b226de094ef2
·boubat on Jul 23 2020, 16:19.
feat: Implement the ShoulderCasePlotter class.
4432eeac5673
·boubat on Jul 23 2020, 16:17.
refactor: Remove deprecated ShoulderCase plot related functions.
7f8a638cbe20
·boubat on Jul 23 2020, 16:16.

Jul 22 2020

Merge branch 'boubat' of https://c4science.
167e44723504
·boubat on Jul 22 2020, 16:22.
refactor: Change properties accessibility to private.
50f61df44b04
·boubat on Jul 22 2020, 16:10.
fix: Fix loadAllCases() to actually return the loaded cases.
82f271b12fcc
·boubat on Jul 22 2020, 15:59.
refactor: Update and reduce responsability of plotSCase().
96549406910b
·boubat on Jul 22 2020, 13:42.
refactor: Assert that case is found in loadCase()
7891768d78cb
·boubat on Jul 22 2020, 13:21.
refactor: Implement a new ShoulderCaseLoader class.
0f2e1f6b4147
·boubat on Jul 22 2020, 13:11.
refactor: Remove deprecated classes.
0d9a87ad20f8
·boubat on Jul 22 2020, 13:02.
feat: Add class to print updatable message in the command window.
4c53163888f2
·boubat on Jul 22 2020, 12:59.
fix: Fix two methods.
0696cf43f420
·boubat on Jul 22 2020, 12:58.
refactor: Move function to SCaseIDParser class.
a8418a3b1b1e
·boubat on Jul 22 2020, 12:52.

Jul 20 2020

feat: Implement plot() method for Glenoid class.
b7daf62ea39f
·boubat on Jul 20 2020, 16:34.

Jul 7 2020

fix: Fix typo.
7b63ff442ae9
·boubat on Jul 7 2020, 16:40.
Merge branch 'boubat'
7337316bd8d8
·boubat on Jul 7 2020, 16:20.
fix:Scapula: Change the shoulder side selection to load auto landmarks.
54a722355cfb
·boubat on Jul 7 2020, 16:11.

Jul 3 2020

refactor:plot: Enhance and update plot functions of classes.
89fc192eeb56
·boubat on Jul 3 2020, 19:39.

Historymaster9ead59500bba69085341f07…

Apr 8 2021

Apr 1 2021

Mar 23 2021

Mar 22 2021

Feb 16 2021

Jan 12 2021

Jan 11 2021

Dec 11 2020

Dec 10 2020

Sep 24 2020

Sep 22 2020

Sep 14 2020

Sep 10 2020

Sep 8 2020

Sep 7 2020

Sep 4 2020

Aug 31 2020

Aug 17 2020

Aug 14 2020

Aug 10 2020

Aug 6 2020

Aug 5 2020

Aug 4 2020

Jul 31 2020

Jul 30 2020

Jul 28 2020

Jul 24 2020

Jul 23 2020

Jul 22 2020

Jul 20 2020

Jul 7 2020

Jul 3 2020

History
master9ead59500bba69085341f07…