c483e925a71c remove save J matrix

184490ddc430 convert periodic mesh tests into gtests

1f05699abf8b Completed implementation of interpolation of bulk damage on computation mesh…

bf637b29f909 Changing references to pass by value to avoid dangling types in the python…

747af1fd2a77 Test pure compression with slip weakening law

1842b4e9f6a0 Merge branch 'bugfixes/contains-and-compiler-options' into 'master'

9a7c04e6e28c making the default with both mumps and petsc

e88ad0cdf083 Initial material for MFront taken from an old local branch

0cc5f90a6f29 Changing boost policy due to weird mix of recent boost without boostconfig

23af7633761c Update changelog.md

a4feb9adfe91 need previous grad_u values to compute trial state

6e2486bf6f04 add packaging<22 constraint in pyproject

3539b09d8931 add algorithm header to compatibility with c++ standard

9c557ec975a1 Rewriting the algebraic parser using instead of

7a803a912481 adding a few methods to the pyhton interface

d8358a82008f Merge branch 'bugfixes/material_selectors' of gitlab.com:akantu/akantu into…

8efbbf34ac4b bug fix on the custom czm law

7ffba0f25a19 Tab to space

2ed2b5f2e9c1 Changing size of empty_filter to get an allocation

b97c9f148858 Correcting missing object in python

ff99106a96ad Making sur the example runs

ef592d6afcab MR are not accessible with CI_JOB_TOKEN

f49381c7dbb3 Change gitpod to use Eigen solver instead of MUMPS

c29b835057fe Rules for python packages fix

90221c6b6774 Linting

625d1ff18c4b Typos correction

f3ff7b69e52f Preparing a developper manual

4d8f88a27aa2 More bug introduced during Eigenification

a5467275fbe5 some cleaning

80825ebd0d2c missing include

72947bfdea65 Correcting missing implementation of computePotentialEnergyByElement

b35bce9f3386 Pushed a useless modif by mistake

0ac15838efcf Aome dupplicated text removed

2fcc665f368b Advancing on the branch

1d4a14f57340 Include blocked DOF for scaling threshold in solve

14ba1df53331 Default urllib changed making the doc fail

ea41a8601b8b code formatting

f54488dde6c3 fixed type and added general MUMPS setup

3d0478aea235 Cleaning debug messages

6cb1e0229070 Adding some functions in the python interface

a8660d48ad0c adding a template for service desk

7f2e83124bf8 Code quality correction

96936e4f516d Trying to improve code quality

1eba87747331 fixes for code quality

9e6919808056 cleaning dead code and useless files

45b4f250b536 More extensions

72006c9ff770 Linting the changes

58fc55365c02 Bug fix on synchronization of matrix-vector multiplication product

894f3fa58ea4 add prints to phasefield tests

e2543a893617 barycenter function corrected in python

87d81a453d57 Try to use a coupler for internodes

e05fe4915447 Merge branch 'master' into bugfixes/init-dofmanager-virtual-call-badly-placed

c204f4274ee3 Limiting to packaging <22

8904f04f7581 Format and clean up code

561ae72225db Bug fix in the order of operations when dumping data on file

9d5dd2a0101d Merging element types in one concatenated array

342dbdd4dad7 Clean up and format code before merge request

3b7d23e08456 Merge branch 'master' into bugfixes/access_PBC_slaves_python

a918dbc27438 Move max radius iterations to a const variable

e3fbf158ae88 WIP contact detector unification

d846de9e46df Solving the code-quality docker problem

095d38b72423 [JOSS] added start of statement of need

e9572b464dec Bug fix for element types that are not surface elements

a6216dbfb2f1 Not the proper config set for mathjax

23afa0f74cab Correcting a warning at compilation

4bef37d06831 Update semver.py

b8b5f49bb76d keeping old version but marking it deprecated

182ce131f824 Modification according to the comments to the merge request

4964c71bb961 Running clang-format for code quality checks

56be2315a654 Apply 2 suggestion(s) to 2 file(s)

96dbd1c1c33c Apply 1 suggestion(s) to 1 file(s)

489f68024a53 Adding the default argument to `setIntegrationScheme`

522a8942da5d Fixed some compilation errors in the `python/py_integration_scheme.cc` file.

46136c790f2b Fixed the CMake of the Python Interface.

e8c32d0071fb Merge branch 'master' into features/fluid_diffusion

8b7452d376ef Modified for clang outputs

a93d28df4d6e Macos runner is only a beta for now

be1d642f7f11 modify and correct the linear isotropic hardening documentation

28ddb633daa4 Merge branch 'master' into features/mesh-periodic-info-in-python

f62223fca929 Merge branch 'master' into bugfixes/python_interface_energy_computations

a5604846c123 `numpy` and `scipy` are not installed with `--no-index`

32ba7f54c6bb Merge branch 'master' into bugfixes/flatten-internal-that-are-missing

a642535c1662 Wrong variable

faa3ae1123b2 Merge branch 'master' into bugfixes/cmake_regex_error

2610f04da5bc Debugging warning linter

fb9074bf8139 google-test ref changed from master to main

bfa6d2e48b1e reactivating dirichlet freeboundary

1c72ce33b004 Merge branch 'features/terms-to-add-in-python' into 'master'

6503defbf56c Bug fix in the interface

d5c9b97925e8 Merge branch 'master' of gitlab.com:akantu/akantu into features/python-doc

495380ed006a Update .gitlab-ci.yml

8b08be27bec5 Correcting ubuntu build

444bd1903ad5 Adding a changelog

6c4aec2225d4 bug fix for the dumper field: now possible again to dump a mesh

c0d04907a264 Merge branch 'features/11-computation-of-contact-energy-with-getenergy-contact'…

9d1fa26bb37b Merge branch 'master' into features/cohesive_clusters

cf25e59e090b Debuged getElementInradius and added a test

d213b95f146f Linting the cc files too

2244fa6a4217 Correcting include in py_material.cc

6262bb9b0011 Resetting the J matrix if the boundary changed