Merge branch 'master' into bugfixes/flatten-internal-that-are-missing
32ba7f54c6bb
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Authored by Nicolas Richart <networms@gmail.ch> on Jan 17 2022, 09:46.

Description

Merge branch 'master' into bugfixes/flatten-internal-that-are-missing

Details

Committed

Nicolas Richart <networms@gmail.ch>

Jan 17 2022, 09:46

Pushed

gitlab-richart

Jan 17 2022, 09:46

Parents

rAKAfbdc2ac1ae19: Merge branch 'bugfixes/docker-image' into 'master'
rAKA849f02d8326e: Removing early out of a loop that can cause an flatten internal to not be…

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bugfixes/flatten-internal-that-are-missing

Event Timeline

Nicolas Richart <networms@gmail.ch> committed rAKA32ba7f54c6bb: Merge branch 'master' into bugfixes/flatten-internal-that-are-missing (authored by Nicolas Richart <networms@gmail.ch>).Jan 17 2022, 09:46

Merged Changes

Commit	Author	Details	Committed
fbdc2ac1ae19	richart	Merge branch 'bugfixes/docker-image' into 'master'	Jan 15 2022
96aea35d9bf2	Nicolas Richart	Changed debian:testing to debian:bullseye and corrected coverage	Jan 15 2022
9c40e0686a82	richart	Merge branch 'bugfixes/cmake_regex_error' into 'master'	Jan 15 2022
faa3ae1123b2	anciaux	Merge branch 'master' into bugfixes/cmake_regex_error	Jan 14 2022
cb44d0f7690c	tdroch	Merge branch 'bugfixes/36-pretty-print-of-akantu-array' into 'master'	Jan 14 2022
e8261daf649e	anciaux	change apt-get to apt hoping to have the key problem fixed	Jan 14 2022
b58c882ac2a1	anciaux	Some cmake version complains about an illegal character	Jan 13 2022
2610f04da5bc	Nicolas Richart	Debugging warning linter	Jan 12 2022
1bf1286f15f4	Nicolas Richart	Updating pterry printers and adding missing regexp for Arrays	Jan 11 2022
dc73cc98c872	richart	Merge branch 'features/moving-pypi-package-in-main-akantu' into 'master'	Dec 23 2021
4d4db01864a7	richart	This makes the CI build the python wheel - on master it pushes the wheel to the…	Dec 23 2021

Changes (137)
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This commit is very large. Load each file individually.

		Path
M		.editorconfig
M		.gitignore
A	(dir)	.gitlab-ci.d/
A		.gitlab-ci.d/code-quality.yaml
A		.gitlab-ci.d/images.yaml
A		.gitlab-ci.d/templates.yaml
M		.gitlab-ci.yml
A		.pypirc
M		CMakeLists.txt
A		MANIFEST.in
D		README
A		README.md
M		VERSION
M		cmake/AkantuConfig.cmake.in
M		cmake/AkantuExtraCompilationProfiles.cmake
M		cmake/AkantuInstall.cmake
A		cmake/AkantuNeedPybind11.cmake
M		cmake/AkantuTestsMacros.cmake
M		cmake/Modules/CMakePackagesSystem.cmake
M		cmake/Modules/CMakeVersionGenerator.cmake
D		cmake/Modules/FindCppArray.cmake
M		cmake/Modules/FindGMSH.cmake
D		cmake/Modules/FindIOHelper.cmake
M		cmake/Modules/FindMumps.cmake
D		cmake/Modules/FindNumpy.cmake
M		cmake/Modules/FindScaLAPACK.cmake
M		cmake/akantu_install_environement.csh.in
M		cmake/akantu_install_environement.sh.in
A		cmake/akantu_version.py.in
M		cmake/libakantu/v3/printers.py
A		dev-requirements.txt
M		examples/python/structural_mechanics/CMakeLists.txt
M		extra_packages/igfem/src/solid_mechanics_model_igfem.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_coulomb_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_cohesive_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_no_regularisation.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_rubin_ampuero.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_simplified_prakash_clifton.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_friction_tmpl.hh
M		packages/akantu_iterators.cmake
M		packages/blas.cmake
M		packages/dumpers.cmake
M		packages/google-test.cmake
M		packages/iohelper.cmake
M		packages/mumps.cmake
M		packages/numpy.cmake
M		packages/pybind11.cmake
A		packages/python.cmake
M		packages/python_interface.cmake
D		packages/python_interpreter.cmake
D		packages/pythonlibs.cmake
M		packages/scalapack.cmake
M		packages/scotch.cmake
A		pyproject.toml
M		python/CMakeLists.txt
M		python/py_akantu.cc
A		setup.cfg
A		setup.py
M		src/CMakeLists.txt
M		src/common/aka_config.hh.in
M		src/io/dumper/dumpable.cc
M		src/io/dumper/dumpable.hh
M		src/io/dumper/dumpable_inline_impl.hh
M		src/io/dumper/dumper_field.hh
M		src/mesh/element_group.cc
M		src/mesh/group_manager_inline_impl.hh
M		src/mesh/mesh.cc
M		src/mesh/node_group.cc
M		src/model/common/dof_manager/dof_manager_default.cc
M		src/model/common/dof_manager/dof_manager_petsc.cc
M		src/model/contact_mechanics/contact_mechanics_model.cc
M		src/model/contact_mechanics/contact_mechanics_model.hh
M		src/model/heat_transfer/heat_transfer_model.cc
M		src/model/model.cc
M		src/model/model_couplers/coupler_solid_cohesive_contact.cc
M		src/model/model_couplers/coupler_solid_contact.cc
M		src/model/model_couplers/coupler_solid_contact.hh
M		src/model/model_couplers/coupler_solid_contact_tmpl.hh
M		src/model/model_couplers/coupler_solid_phasefield.cc
M		src/model/phase_field/phase_field_model.cc
M		src/model/solid_mechanics/material.hh
M		src/model/solid_mechanics/solid_mechanics_model.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.cc
M		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.cc
M		src/model/solid_mechanics/solid_mechanics_model_io.cc
M		src/model/structural_mechanics/structural_mechanics_model.cc
A	(dir)	test/ci/debian:bullseye/
V	(dir)	test/ci/{debian:bullseye/.openmpi/ ← debian:testing/.openmpi}
V		test/ci/{debian:bullseye ← debian:testing}/.openmpi/mca-params.conf
V		test/ci/{debian:bullseye ← debian:testing}/Dockerfile
D		test/ci/debian:testing
V	(dir)	test/ci/{debian:testing/.openmpi/ → debian:bullseye/.openmpi}
V		test/ci/{debian:testing → debian:bullseye}/.openmpi/mca-params.conf
V		test/ci/{debian:testing → debian:bullseye}/Dockerfile
M		test/ci/includes_for_ci/aka_config.hh
A		test/ci/make-wheels.sh
D		test/ci/manylinux
D		test/ci/manylinux/Dockerfile
V		test/ci/{manylinux → manylinux:2010_x86_64}/compilers.yaml
A	(dir)	test/ci/manylinux:2010_x86_64/
A		test/ci/manylinux:2010_x86_64/Dockerfile
A		test/ci/manylinux:2010_x86_64/Toolchain.cmake
V		test/ci/{manylinux:2010_x86_64 ← manylinux}/compilers.yaml
A		test/ci/manylinux:2010_x86_64/install-pip.sh
A		test/ci/manylinux:2010_x86_64/packages.yaml
A		test/ci/manylinux:2010_x86_64/repos.yaml
A		test/ci/manylinux:2010_x86_64/spack.yaml
M		test/ci/scripts/codequality/issue_generator_warnings.py
M		test/ci/ubuntu:lts/Dockerfile
M		test/test_gtest_main.cc
M		test/test_mesh_utils/test_mesh_partitionate/test_mesh_partitionate_mesh_data.cc
M		test/test_mesh_utils/test_mesh_partitionate/test_mesh_partitionate_scotch.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_parallel_extrinsic/test_cohesive_parallel_extrinsic_tetrahedron_displacement.cc
M		test/test_solver/test_sparse_matrix_profile_parallel.cc
M		test/test_synchronizer/test_dof_synchronizer.cc
M		test/test_synchronizer/test_dof_synchronizer_communication.cc
M		test/test_synchronizer/test_grid_synchronizer.cc
D		third-party/MUMPS_4.10.0.patch
D		third-party/MUMPS_4.10.0_make.inc.cmake
D		third-party/MUMPS_4.9.2_make.inc.cmake
D		third-party/MUMPS_5.0.0.patch
M		third-party/akantu_iterators/CMakeLists.txt
D		third-party/blas_3.5.0_make.inc.cmake
D		third-party/cmake/mumps.cmake
D		third-party/cmake/scalapack.cmake
D		third-party/cmake/scotch.cmake
M		third-party/iohelper/src/CMakeLists.txt
M		third-party/pybind11.cmake.in
D		third-party/scalapack_2.0.2.patch
D		third-party/scotch_5.1.12b.patch
D		third-party/scotch_5.1.12b_make.inc.cmake
A		versioneer.py