Diffusion akantu (bugfixes/clean-memoryfree-dofmanager) History

clean…

Tue, Apr 29

remove mat destroy at copy
cf3e5cd1f927
·saduruss on Tue, Apr 29, 12:04.

Wed, Apr 16

Correcting parallel access to petsc vector
324b3f3c84f0
·richart on Wed, Apr 16, 21:14.
Extending parsables for PETSc
d4b7f12974a1
·richart on Wed, Apr 16, 18:56.
Correcting the mass computation
126bd46f9c8d
·richart on Wed, Apr 16, 17:03.
Bug fix in the computation of ghosts
e1eb57e5ed2f
·richart on Wed, Apr 16, 16:38.
Protecting VecMPISetGhost call
7f093f661800
·richart on Wed, Apr 16, 14:09.
Merge branch 'features/52-anisotropic-and-at1-phase-field-models' of gitlab.com…
7fdf76d1be87
·richart on Wed, Apr 16, 13:37.
set ghost for PETSc solver vectors
3b6a9888f17d
·saduruss on Wed, Apr 16, 11:29.

Sat, Apr 12

Removing file that should never have been there
cdccc4304c09
·richart on Sat, Apr 12, 18:01.

Fri, Apr 11

Adding petsc backward compatibility
36f927e83b27
·richart on Fri, Apr 11, 13:32.

Thu, Apr 10

Cleaning includes
729bc73149e9
·richart on Thu, Apr 10, 23:10.
Cleaning CI for clang
2592c8155e30
·richart on Thu, Apr 10, 22:03.
Changing default package back and moving code around
b6300dab6d7f
·richart on Thu, Apr 10, 20:27.
Adding a test for getArrayPerDOFs and refactoring
156a83d6f41d
·richart on Thu, Apr 10, 18:47.
Adding an AO and setting ghosts to all solvervetors
1ffc0896ea6e
·richart on Thu, Apr 10, 18:45.
Linting
b7cf40ec4a19
·richart on Thu, Apr 10, 18:45.

Apr 4 2025

update with master branch
d064c953df06
·saduruss on Apr 4 2025, 18:38.
add assembly after added values to vector
611d436f60ce
·saduruss on Apr 4 2025, 18:30.
add save vector and save associated nodes
60e07f69e7a5
·saduruss on Apr 4 2025, 18:28.
fix -1 in blocked dofs indexes for PETSc
d5d88e138abc
·saduruss on Apr 4 2025, 18:23.

Mar 17 2025

add thermal strain and thermal plane stress test
858a8da206d2
·branch: bugfix/74-2d-thermal-expansion-missing
·saduruss on Mar 17 2025, 16:31.
add 2D thermal stress
9743a4c63212
·saduruss on Mar 17 2025, 11:18.

Mar 5 2025

merge conflict
b64b18183798
·saduruss on Mar 5 2025, 11:35.
small fix in pf coupler
058b047e3350
·saduruss on Mar 5 2025, 11:34.

Feb 21 2025

Avoid the move constructor of arrays
9415941b9422
·richart on Feb 21 2025, 21:31.

Feb 19 2025

fix tao solver adding solution to dof and bug in pf coupler
6b10624d3c33
·saduruss on Feb 19 2025, 17:45.

Feb 3 2025

change necessity to reassemble matrix
107350fd2fe7
·saduruss on Feb 3 2025, 14:01.

Feb 2 2025

Merge branch 'features/change-spiritv2-to-spiritx3' into 'master'
d16b3e3f219f
·richart on Feb 2 2025, 20:46.

Jan 30 2025

clean unused params
1430bbf768fb
·saduruss on Jan 30 2025, 18:53.

Jan 28 2025

fix bug in stiffness degradation
a03be9269d2f
·saduruss on Jan 28 2025, 16:44.

Dec 17 2024

adapt phase-field to TAO
a3880b309278
·saduruss on Dec 17 2024, 17:41.

Dec 9 2024

first implementation of TAO solver
71ac08e6ddec
·saduruss on Dec 9 2024, 08:43.

Nov 28 2024

add gradu to phasefield com for mass degradation
c85b2d2f5a6c
·saduruss on Nov 28 2024, 14:53.

Nov 20 2024

remove save J matrix
c483e925a71c
·saduruss on Nov 20 2024, 17:42.
correct strain for phasefield damage
fe41757ac6b4
·saduruss on Nov 20 2024, 11:31.

Nov 18 2024

add mass degradation to anisotropic phasefield
f582c9363e7d
·saduruss on Nov 18 2024, 16:49.

Nov 15 2024

add thermal stress to phasefield
198dba2220a5
·saduruss on Nov 15 2024, 15:57.

Oct 25 2024

fix conflict merge petsc
af40b4902b6c
·saduruss on Oct 25 2024, 14:22.
assembly without penalization
c8f68af8cd3e
·saduruss on Oct 25 2024, 14:19.

Oct 22 2024

clean the enums for nls
9d3ef4b4bb0b
·anciaux on Oct 22 2024, 17:29.
cleaning code for petsc nls
b0fd345654b6
·anciaux on Oct 22 2024, 16:54.
working petsc nls
19ae456df4ad
·anciaux on Oct 22 2024, 16:34.
alow to restore solution state in model for petsc nls
f13c2d844057
·anciaux on Oct 22 2024, 16:33.
fix init bug in sparse Petsc matrix
c34d4e7e79bd
·anciaux on Oct 22 2024, 16:32.
modernize code to c++-17
f9194dc804a0
·anciaux on Oct 22 2024, 16:32.
Adding references to the compile pools
d6c83049c641
·richart on Oct 22 2024, 15:58.

Oct 21 2024

still try to debug the nsl solver
6f86cbde5caf
·anciaux on Oct 21 2024, 13:36.

Oct 20 2024

c++ 17 style
b25081088911
·anciaux on Oct 20 2024, 22:47.
remove the useless callback and rearrange nls
c2e0e6c172ab
·anciaux on Oct 20 2024, 22:46.
print functions for sparse matrices/vectors
464d52ad3a03
·anciaux on Oct 20 2024, 22:45.

Oct 19 2024

comment for understanding
9d9423aa4498
·anciaux on Oct 19 2024, 12:02.
start testing the petsc SNES
b7f170e9a1a4
·anciaux on Oct 19 2024, 09:31.

Oct 18 2024

Bug fix in fem.contains
11d0bd330f3a
·richart on Oct 18 2024, 20:25.
Simplifying tuple_dispatch
8f6b7f68d76b
·richart on Oct 18 2024, 20:25.

Oct 16 2024

do not reset options to avoid cancelling options passed at command line
70cf2b20c693
·anciaux on Oct 16 2024, 13:59.
debug save of matrix for debug purpose commented
8e9e51798988
·anciaux on Oct 16 2024, 12:24.
fix bug solve phase field problem on a test
b76f74be78a2
·anciaux on Oct 16 2024, 12:24.
auto range loop c++-17
17349552d7a6
·anciaux on Oct 16 2024, 12:22.

Oct 15 2024

c++ range loop
d82f7ebeaf2a
·anciaux on Oct 15 2024, 16:20.
allows solver_options in initFull
ad98b01677a5
·anciaux on Oct 15 2024, 16:17.

Oct 11 2024

do not pass blocked dofs when solving the lumped system: unnecessary
9844e2ad92ca
·anciaux on Oct 11 2024, 17:32.
renaming back to SolverVector
d2a7181e2483
·anciaux on Oct 11 2024, 16:58.
use the scaling for solving lumped with petsc
612a9b697cb5
·anciaux on Oct 11 2024, 11:18.
enable solvervector resize and update of petsc IS from dofmanager
d5ce859b3064
·anciaux on Oct 11 2024, 07:20.
remove useless member of dofdata
3231c47bc0e8
·anciaux on Oct 11 2024, 07:20.
line formating
a8d44609d546
·anciaux on Oct 11 2024, 07:19.
remove duplicate member in daugther class
a3d7229f26f4
·anciaux on Oct 11 2024, 07:18.

Oct 8 2024

fix multi material test: matrix profile not fixed
cd864419c922
·anciaux on Oct 8 2024, 18:50.
working solverlumped with petsc dof_manager
4603364dc65f
·anciaux on Oct 8 2024, 18:24.

Oct 5 2024

adding a version safer but with a copy
70dc17ecaa1b
·anciaux on Oct 5 2024, 23:05.
prevent petsc to finalize mpi (as mpi4py may have done it already)
c0db265d35d8
·anciaux on Oct 5 2024, 16:36.
cleaning
c5d3e654a5d8
·anciaux on Oct 5 2024, 11:52.
saving state
873a7a2dd1d1
·anciaux on Oct 5 2024, 11:04.

Oct 4 2024

cleaning
237f49d247c0
·anciaux on Oct 4 2024, 17:33.
cleaning
e4b06fa91110
·anciaux on Oct 4 2024, 15:43.
error handler for PETSc generates nice Akantu exceptions
63e3229da822
·anciaux on Oct 4 2024, 15:41.
updateinternal called from the parser
408382e66dc4
·anciaux on Oct 4 2024, 15:39.

Oct 2 2024

set default solver in model options
ab7c9d7adaae
·anciaux on Oct 2 2024, 18:28.
set package
5cfc6d90c229
·anciaux on Oct 2 2024, 16:51.
protect mumps for compilation
9eef1190ce9f
·anciaux on Oct 2 2024, 16:46.

Oct 1 2024

protect code for when petsc not activated
434e4d6658b8
·anciaux on Oct 1 2024, 23:55.
fix bug at destruction of dof_manager
fd93c90db44f
·anciaux on Oct 1 2024, 22:36.
fix petsc for lumped solver type
4973754bc60a
·anciaux on Oct 1 2024, 22:08.

Sep 30 2024

passing correctly the options to petsc
003a4c85b7d4
·anciaux on Sep 30 2024, 10:10.

Sep 26 2024

new set func for parameters: std::any
e1c6b4798fa2
·anciaux on Sep 26 2024, 17:50.

Sep 25 2024

Merge branch 'master' into features/solver-rewrite
ee8fd0f901de
·anciaux on Sep 25 2024, 13:25.
broken
fa11b9853369
·anciaux on Sep 25 2024, 13:24.
cleaning debug output to file
f7242e84236f
·anciaux on Sep 25 2024, 08:16.
cleaning message
4fb986f40817
·anciaux on Sep 25 2024, 08:14.
cleaning stdout messages
dde89acc6be6
·anciaux on Sep 25 2024, 08:03.
unregister dofmanager from mesh: allow multiple dofmanager creation
01c8bcfe7428
·anciaux on Sep 25 2024, 07:48.
fixing dofmanagerpetsc instantiation
0cd787eb1bf6
·anciaux on Sep 25 2024, 07:48.

Sep 23 2024

advance in fixing petsc solver
9bd992624315
·anciaux on Sep 23 2024, 18:23.
transition to use akantu newton raphson with petsc
6173df8a4138
·anciaux on Sep 23 2024, 17:08.

Sep 10 2024

communication of damage for mass degradation
e8f845ce8831
·saduruss on Sep 10 2024, 14:31.

Aug 3 2024

bug fix in mass degradation
911d50d3ca0f
·saduruss on Aug 3 2024, 23:37.

Jul 31 2024

bug fixes (to be tested)
c68c50722c4e
·saduruss on Jul 31 2024, 16:56.
degrade mass by density
bd6977b562ce
·saduruss on Jul 31 2024, 14:25.

Jul 16 2024

fix bug in initial mass
fd623bf6a549
·saduruss on Jul 16 2024, 16:57.
store initial mass
2c88c72679d0
·saduruss on Jul 16 2024, 15:55.

rAKA/srcbugfixes/clean…

Tue, Apr 29

Wed, Apr 16

Sat, Apr 12

Fri, Apr 11

Thu, Apr 10

Apr 4 2025

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rAKA/src
bugfixes/clean…