Diffusion akantu (bugfixes/installation_documentation) History

History
bugfixes/installation_d…a835a3214c4827f0baff704…

Sep 5 2018

Making compilation work with gcc >= 8
a835a3214c48
·richart on Sep 5 2018, 13:48.

Jul 19 2018

commit to push before vacations: this version is currently broken
327aad04af0a
·richart on Jul 19 2018, 16:57.

Jun 19 2018

Implementing missing function fir makePeriodic
d35974ef9782
·richart on Jun 19 2018, 15:07.
Add google-benchmark for benchmarking
ccded5305f53
·richart on Jun 19 2018, 13:47.
Rewrote the equation numbers to work properly with pbc
d06c0a0487e5
·richart / gallyamov on Jun 19 2018, 12:30.

Jun 17 2018

minor improvements
8b3453beaf64
·• arichart on Jun 17 2018, 23:45.
make it compile in sequential too
f2c01b8dc4fc
·• arichart on Jun 17 2018, 23:45.
Fix for nodeflag change
9d1800564f97
·• arichart on Jun 17 2018, 23:44.
Bug fix if periodic mesh have more than one dof per node
2ec7f7581cc7
·• arichart on Jun 17 2018, 23:44.

Jun 15 2018

Initialize the is_periodic variable
40c729a672b7
·richart on Jun 15 2018, 12:03.
Pre-working stage for PBC:
d4f0b6028779
·richart on Jun 15 2018, 11:02.

May 30 2018

Multiple changes in order to start implementation of periodicity
033a8225e32a
·richart on May 30 2018, 14:47.

Apr 17 2018

adding debug info in makePeriodic
ba0d478cf0b3
·richart on Apr 17 2018, 17:53.

Apr 9 2018

Syntax error in mesh.cc DEBUG_ERROR -> ERROR
195608c9be30
·richart on Apr 9 2018, 14:53.

Apr 4 2018

NodeType becomes NodeFlags + node_prank
7d530d027fd0
·richart on Apr 4 2018, 17:53.
Adding BBox
e71e540aaa48
·richart on Apr 4 2018, 17:10.
correction in DynamicCommunicationBuffer
7f933d1c9d7c
·richart on Apr 4 2018, 17:10.
namespace correction
8ea334aed4ad
·richart on Apr 4 2018, 17:10.
order correction in tensors
b9f8cbc2348a
·richart on Apr 4 2018, 17:10.
adding a mesh makePeriodic function
ba18e5860efa
·richart on Apr 4 2018, 17:08.
spacial direction ?
8b22417fb5c7
·richart on Apr 4 2018, 17:07.
Adding a full blown object to treat bounding boxes
a6ae4099f295
·richart on Apr 4 2018, 17:07.
Adding functionality for periodicity in the mesh
11d8a4d1b2c5
·richart on Apr 4 2018, 17:05.
Cleaning the pbc
8c2ead782ac0
·richart on Apr 4 2018, 17:05.
Cleaning the Jenkinsfile
0bbad422f5e2
·richart on Apr 4 2018, 11:19.

Apr 3 2018

Allowing to skip test in gtest
c43899c526cc
·richart on Apr 3 2018, 21:11.
Adapting the test driver to handle extra option for test executable
b2b4f9e7a282
·richart on Apr 3 2018, 20:40.
Trying to analyze gtest results separately
e8d2352f1bba
·richart on Apr 3 2018, 16:51.
Switching output to ctest
6c8e80ac80aa
·richart on Apr 3 2018, 16:06.
Syntax error in email notification
958249a79fbf
·richart on Apr 3 2018, 13:53.
More comments problems
14fefaf44446
·richart on Apr 3 2018, 13:39.
Remaining useless comment
d04d2031c1de
·richart on Apr 3 2018, 13:37.
Attempt to make the test pass with mpi in docker
a974cb7fb24c
·richart on Apr 3 2018, 13:33.

Mar 28 2018

mode syntax errors
7c75df790315
·richart on Mar 28 2018, 20:31.
syntax error in Jenkins file
f76a48447125
·richart on Mar 28 2018, 20:24.
Adding tests and notifications to jenkinsfile
a9630d9994cb
·richart on Mar 28 2018, 20:18.
Added Jenkinsfile
74124d83987c
·richart on Mar 28 2018, 19:51.
Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private
7475e6d06223
·gallyamov on Mar 28 2018, 16:00.
Made cohesive intrinsic example work
372dd18148b4
·gallyamov on Mar 28 2018, 15:58.

Mar 27 2018

Adding cleaning to help debug Jenkinsfile
befcbaadef92
·richart on Mar 27 2018, 20:52.
Adding git and handling mpi codes to not fail even in sequential
c753772b83f5
·richart on Mar 27 2018, 20:44.
More minor changes for tests
2dd4a6dc714b
·richart on Mar 27 2018, 19:57.
More missing packages in docker
6307b3c73a73
·richart on Mar 27 2018, 19:29.
Adapting dockerfile according to best practices
3179fe8fda79
·richart on Mar 27 2018, 19:18.
Adding blas in docker and cd build in jenkins
8121b743d7b6
·richart on Mar 27 2018, 19:06.
More tweaking on the Jenkins file
843de98e3fb7
·richart on Mar 27 2018, 18:19.
Adding docker file
8f35967432b4
·richart on Mar 27 2018, 18:15.
typo in Jenkinsfile
6d8484ee0a8e
·richart on Mar 27 2018, 18:02.
Minor changes int the python insterface
2bbc30b8dd4c
·richart on Mar 27 2018, 17:02.
is_extrinic in python
2bcda32fdee4
·richart on Mar 27 2018, 15:23.

Mar 23 2018

Changes docker image
ede2f5e72ff6
·richart on Mar 23 2018, 17:59.
Initial commit of Jenkinsfile
c675c376462d
·richart on Mar 23 2018, 17:52.

Mar 20 2018

give access to solve step of a given solver
6084ccd718c5
·anciaux on Mar 20 2018, 17:36.
make example compile
c4a3de477515
·anciaux on Mar 20 2018, 17:35.

Mar 15 2018

Fixing bug introduced due to change of behavior when mesh distributed in…
29f36af846c5
·richart on Mar 15 2018, 13:08.
Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private
49572d5f5f6b
·richart on Mar 15 2018, 00:50.
Adding info on how to compil a external simu
9f07cdd93b98
·richart on Mar 15 2018, 00:47.
cleaning the code
e28e345c933b
·richart on Mar 15 2018, 00:26.
More correction to install
6708a9d70aaa
·richart on Mar 15 2018, 00:14.
Correcting the make install phase
1a8e8899ec36
·richart on Mar 15 2018, 00:10.

Mar 14 2018

Bug fix with asynchronous communications
d1c6c42cff98
·richart on Mar 14 2018, 23:25.
Sanity check to detect a crappy bug
a2531b4b8718
·richart on Mar 14 2018, 19:58.
Bug fix due to asynchronous communications
d713e84a43b3
·richart on Mar 14 2018, 19:58.
Correcting communications scheme in case of new nodes added
9f259b44ee17
·richart on Mar 14 2018, 19:01.
Bug fix for static computations with cohesive elements
c643c426521c
·richart on Mar 14 2018, 02:44.
Cleaning doc + install files
8d7094396ab7
·richart on Mar 14 2018, 02:43.

Mar 13 2018

Minor bug fixes
cc1df18202b9
·richart on Mar 13 2018, 03:30.
Correcting tests for embeded and improving test cohesive
184ef21a2c0b
·richart on Mar 13 2018, 03:30.
Cleaning getBarycenter
2897202b1f6d
·richart on Mar 13 2018, 03:29.
A bit of cleaning
9714682b1b35
·richart on Mar 13 2018, 00:43.
Cleaning the test for pentahedron
033b29cf9ed6
·richart on Mar 13 2018, 00:42.
Moving the filtering code
cb8a85cba847
·richart on Mar 13 2018, 00:42.
Updating the traction-at-split-node-contact to the new interface
e3b7f3373840
·richart on Mar 13 2018, 00:41.

Mar 11 2018

Bug in pentahedron partitioning
1a2e196d60ef
·richart on Mar 11 2018, 23:51.
Bug fix for element with multiple facet types
d79ba446e769
·richart on Mar 11 2018, 22:21.
Bug fix for cohesive element in sequential
6213adec4933
·richart on Mar 11 2018, 21:19.
bug fix in 1D
fb166d5b3c8f
·richart on Mar 11 2018, 21:06.
Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private
d01e5b0fca1d
·richart on Mar 11 2018, 19:11.
Cleaning warnings when compiling in release
347aaaa4208f
·richart on Mar 11 2018, 19:07.
Cleaning swig warnings at compilation
15fbae074af8
·richart on Mar 11 2018, 19:01.
Fixing bugs introduced will bug fixing cohesive elements in parallel
1b065daef62a
·richart on Mar 11 2018, 18:34.
Updated cohesive element full test
8675d85a9fd1
·richart on Mar 11 2018, 05:34.
Bug fix in cohesive intrinsic parallel + changes in material selection
cf4f38fcd595
·richart on Mar 11 2018, 05:34.
Typo in a node type
f0e158294f0f
·richart on Mar 11 2018, 04:08.
Bug fix in inserter
d94a09928098
·richart on Mar 11 2018, 04:07.
Some more rewriting in mesh_utils
201b55bb0036
·richart on Mar 11 2018, 02:33.
Bug fix in renumbering nodes during cohesive insertion
8017498b23df
·richart on Mar 11 2018, 01:59.

Mar 10 2018

Bug fix in the cohesive element insertion
28d5a660b2e7
·richart on Mar 10 2018, 22:28.
Unitialized memory bug
3a75fa285a83
·richart on Mar 10 2018, 22:28.
minor enhancing
0557e793fc24
·richart on Mar 10 2018, 18:12.
bug fix intregrator gauss
1b32c9ff70d9
·richart on Mar 10 2018, 18:11.
Correcting gtests tests
904cdb0be6fc
·richart on Mar 10 2018, 17:56.

Mar 9 2018

Adding accessor to the solution
0c261bbb3bb7
·richart on Mar 9 2018, 03:44.
Code cleaning
fb83f31407d2
·richart on Mar 9 2018, 03:44.
Bug fix in the integrator Gauss when nodes are added
48c82461b78d
·richart on Mar 9 2018, 03:42.

Mar 8 2018

protecting comm for sanitychecks
9f1cdd776629
·richart on Mar 8 2018, 10:17.
removing useless object
1796f3857af3
·richart on Mar 8 2018, 10:16.
Rewriting some insertion code to try to make it more readable
a72d7223ce53
·richart on Mar 8 2018, 10:16.
moving event handling code for cohesive elements
b23c7f5855ca
·richart on Mar 8 2018, 10:15.
updating the global ids based on the master nodes and local connectivity
20b46107c7f2
·richart on Mar 8 2018, 10:15.

Historybugfixes/installation_d…a835a3214c4827f0baff704…

Sep 5 2018

Jul 19 2018

Jun 19 2018

Jun 17 2018

Jun 15 2018

May 30 2018

Apr 17 2018

Apr 9 2018

Apr 4 2018

Apr 3 2018

Mar 28 2018

Mar 27 2018

Mar 23 2018

Mar 20 2018

Mar 15 2018

Mar 14 2018

Mar 13 2018

Mar 11 2018

Mar 10 2018

Mar 9 2018

Mar 8 2018

History
bugfixes/installation_d…a835a3214c4827f0baff704…