Diffusion akantu (features/30-implementing-a-checkpoint-restart-mechanism) History

History
features/30-implementin…5bf62b7829bea7145bdbe03…

Jan 6 2019

tests/examples on phasefield added
5bf62b7829be
·pundir on Jan 6 2019, 22:30.

Oct 17 2018

phasefield is working/ still needs to fix the solver
14bb48470d66
·pundir on Oct 17 2018, 16:01.
memory issue even with solid mechanics model
b06c19936f8a
·pundir on Oct 17 2018, 09:19.

Oct 12 2018

even solid mechanics model is giving mumps error
ee96726928d8
·pundir on Oct 12 2018, 22:16.
Merge branch 'master' into features/phasefield
473b4df828ac
·pundir on Oct 12 2018, 18:34.
Correcting the bug of insertion finite_deformation and dump (again)
19368095d709
·richart on Oct 12 2018, 14:26.

Oct 11 2018

Mumps memory error while running simulations
8a0151ef97fc
·pundir on Oct 11 2018, 23:17.

Oct 10 2018

Merge branch 'features/pbc'
057a7338660e
·richart on Oct 10 2018, 10:26.

Oct 9 2018

something is broken in phasefield, need to correct
6875455abf8d
·pundir on Oct 9 2018, 15:54.
correcting mesh_io_msh nodedata
b2c7ec465ed6
·richart on Oct 9 2018, 12:50.

Oct 5 2018

computeNtbN added in fe engine, phasefield examples added
9058dee86204
·pundir on Oct 5 2018, 10:54.

Oct 4 2018

material phasefield added to material damage
c8ea7970c717
·pundir on Oct 4 2018, 09:29.

Oct 2 2018

changed fe_engine computeNtd funciton
4249d1a43325
·pundir on Oct 2 2018, 15:19.

Sep 28 2018

computeDamageFunctor needs to be corrected
61d67f3ce387
·pundir on Sep 28 2018, 09:46.

Sep 27 2018

phasefield model updated
7ae631295369
·pundir on Sep 27 2018, 17:06.
Merge branch 'master' into features/phasefield
66fd3ec449ed
·pundir on Sep 27 2018, 14:44.

Sep 25 2018

Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
33710fe43077
·richart on Sep 25 2018, 18:06.
Adding the mesh nodal data to the python interface
caa62dff9737
·richart on Sep 25 2018, 17:39.

Sep 23 2018

added integration scheme for damage
46ec478078d0
·pundir on Sep 23 2018, 19:34.
cleaning of code in phasefield.cc and addition of _gst tags in aka_common
7981ecf80c4c
·pundir on Sep 23 2018, 13:21.

Sep 17 2018

changes in configuration files to recognize phasefield package
8012b44cf1ce
·pundir on Sep 17 2018, 17:56.
model types added in ccommon/ dumper functions added
6fb268b4807b
·pundir on Sep 17 2018, 16:25.

Sep 13 2018

default values for InternalField members
5e18b3fb8fb4
·frerot on Sep 13 2018, 18:42.
modernizing InternalField
9039ed82b00c
·frerot on Sep 13 2018, 13:10.

Sep 12 2018

functions for parallelization added
f5db42798031
·pundir on Sep 12 2018, 14:07.
Adding transform adaptor and nodedata in mesh data
ee46ef34e455
·richart on Sep 12 2018, 13:22.

Sep 5 2018

make periodic debugging
dbae85499748
·richart on Sep 5 2018, 13:49.
Making compilation work with gcc >= 8
b2e3aaf7f89b
·richart on Sep 5 2018, 13:48.

Sep 4 2018

phase_field_model.cc minor changes
9fcb2090f68a
·pundir on Sep 4 2018, 09:13.
phasefield branch started
59022feadaaf
·pundir on Sep 4 2018, 09:05.

Aug 29 2018

Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
1b4456d7ae8a
·richart on Aug 29 2018, 14:08.
Adding some functions in the python interface
0652e679fb0b
·richart on Aug 29 2018, 14:08.

Aug 15 2018

Expanded the "Compiling your simulation" part of the manual.
cc25cf27fe4e
·brink on Aug 15 2018, 15:26.
Sourcing the environment file
f377553b72f1
·richart on Aug 15 2018, 15:11.

Aug 14 2018

modified fe_engine python interface
40cfe4f7da48
·richart on Aug 14 2018, 17:55.
Modified Jenkinsfile to report states
f5cd671b0d2d
·richart on Aug 14 2018, 17:55.

Aug 10 2018

refactoring fieldTimesShapes in computeNtb
ad8d20ef3a99
·richart on Aug 10 2018, 16:29.
Few compilation fixes for gcc>=8
d70d5d512379
·richart on Aug 10 2018, 15:30.

Jul 19 2018

commit to push before vacations: this version is currently broken
df0bceaf33e6
·richart on Jul 19 2018, 16:57.

Jun 19 2018

Implementing missing function fir makePeriodic
97c250077a6f
·richart on Jun 19 2018, 15:07.
Add google-benchmark for benchmarking
970b5eee332a
·richart on Jun 19 2018, 13:47.
Rewrote the equation numbers to work properly with pbc
5d088de0cac9
·richart / gallyamov on Jun 19 2018, 12:30.

Jun 17 2018

minor improvements
0c2653c85209
·• arichart on Jun 17 2018, 23:45.
make it compile in sequential too
89a6a203b0c1
·• arichart on Jun 17 2018, 23:45.
Fix for nodeflag change
8ff085b0617c
·• arichart on Jun 17 2018, 23:44.
Bug fix if periodic mesh have more than one dof per node
7f7fb9d7fe04
·• arichart on Jun 17 2018, 23:44.

Jun 15 2018

Initialize the is_periodic variable
d8067ee3265f
·richart on Jun 15 2018, 12:03.
Pre-working stage for PBC:
74090d0c5422
·richart on Jun 15 2018, 11:02.

Jun 6 2018

added previous state restore on Material
f45dac62663f
·frerot on Jun 6 2018, 11:47.
added restore history to InternalField
a277f6eaeece
·frerot on Jun 6 2018, 11:14.

May 30 2018

Multiple changes in order to start implementation of periodicity
92000a4400f5
·richart on May 30 2018, 14:47.

May 17 2018

Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private
9654c0079821
·richart on May 17 2018, 17:04.

May 1 2018

added physical names selector to python interface
d9fdcb3cdbc4
·frerot on May 1 2018, 15:50.
removed import mpi4py from python module
8672f3bc3de9
·frerot on May 1 2018, 15:50.

Apr 17 2018

adding debug info in makePeriodic
829e86f18d5a
·richart on Apr 17 2018, 17:53.

Apr 9 2018

Syntax error in mesh.cc DEBUG_ERROR -> ERROR
f2e358ff7e23
·richart on Apr 9 2018, 14:53.

Apr 4 2018

NodeType becomes NodeFlags + node_prank
4ed50ad78b68
·richart on Apr 4 2018, 17:53.
Adding BBox
1daea34db5dd
·richart on Apr 4 2018, 17:10.
correction in DynamicCommunicationBuffer
b2b9387f4a4e
·richart on Apr 4 2018, 17:10.
namespace correction
187bef675a45
·richart on Apr 4 2018, 17:10.
order correction in tensors
ed2ec79ed3bf
·richart on Apr 4 2018, 17:10.
adding a mesh makePeriodic function
c8b80ad5c3a6
·richart on Apr 4 2018, 17:08.
spacial direction ?
9f53e5ba4507
·richart on Apr 4 2018, 17:07.
Adding a full blown object to treat bounding boxes
7c6df5f55619
·richart on Apr 4 2018, 17:07.
Adding functionality for periodicity in the mesh
3389fd9864c6
·richart on Apr 4 2018, 17:05.
Cleaning the pbc
bc98d2c6a6f3
·richart on Apr 4 2018, 17:05.
adding linters for python
d8c887572226
·richart on Apr 4 2018, 14:09.
Cleaning the Jenkinsfile
861722c7de80
·richart on Apr 4 2018, 11:19.

Apr 3 2018

Allowing to skip test in gtest
f11ff5e391a7
·richart on Apr 3 2018, 21:11.
Adapting the test driver to handle extra option for test executable
c7c259e43c96
·richart on Apr 3 2018, 20:40.
Trying to analyze gtest results separately
762d081e469d
·richart on Apr 3 2018, 16:51.
Switching output to ctest
964f190d80f9
·richart on Apr 3 2018, 16:06.
Syntax error in email notification
233eaed66ad2
·richart on Apr 3 2018, 13:53.
More comments problems
cd06618331ca
·richart on Apr 3 2018, 13:39.
Remaining useless comment
bd4cd285dd6e
·richart on Apr 3 2018, 13:37.
Attempt to make the test pass with mpi in docker
f260a9c2767d
·richart on Apr 3 2018, 13:33.

Mar 28 2018

mode syntax errors
65d3e092eec3
·richart on Mar 28 2018, 20:31.
syntax error in Jenkins file
942144db37af
·richart on Mar 28 2018, 20:24.
Adding tests and notifications to jenkinsfile
7b209521f0cf
·richart on Mar 28 2018, 20:18.
Added Jenkinsfile
5ecfad611bfb
·richart on Mar 28 2018, 19:51.
Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private
e65caf54da2a
·gallyamov on Mar 28 2018, 16:00.
Made cohesive intrinsic example work
0b62f26759f5
·gallyamov on Mar 28 2018, 15:58.

Mar 27 2018

Adding cleaning to help debug Jenkinsfile
7c06d2022ec0
·richart on Mar 27 2018, 20:52.
Adding git and handling mpi codes to not fail even in sequential
7e5977933036
·richart on Mar 27 2018, 20:44.
More minor changes for tests
3e33fcb8b553
·richart on Mar 27 2018, 19:57.
More missing packages in docker
830354e8d523
·richart on Mar 27 2018, 19:29.
Adapting dockerfile according to best practices
19a3d6320447
·richart on Mar 27 2018, 19:18.
Adding blas in docker and cd build in jenkins
57ae8c45d5d3
·richart on Mar 27 2018, 19:06.
More tweaking on the Jenkins file
5c17e452b00f
·richart on Mar 27 2018, 18:19.
Adding docker file
e71c3767c5a6
·richart on Mar 27 2018, 18:15.
typo in Jenkinsfile
7bd151c5becc
·richart on Mar 27 2018, 18:02.
Minor changes int the python insterface
6037ec685449
·richart on Mar 27 2018, 17:02.
is_extrinic in python
0c2f0824a102
·richart on Mar 27 2018, 15:23.

Mar 23 2018

Changes docker image
71e2c696b213
·richart on Mar 23 2018, 17:59.
Initial commit of Jenkinsfile
72b6fc3eb788
·richart on Mar 23 2018, 17:52.

Mar 20 2018

give access to solve step of a given solver
9584d3d2e551
·anciaux on Mar 20 2018, 17:36.
make example compile
cb0357d8ec83
·anciaux on Mar 20 2018, 17:35.

Mar 15 2018

Fixing bug introduced due to change of behavior when mesh distributed in…
f9303b3de78a
·richart on Mar 15 2018, 13:08.
Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private
9f5c313e742a
·richart on Mar 15 2018, 00:50.
Adding info on how to compil a external simu
cdbff57d9c7d
·richart on Mar 15 2018, 00:47.

Historyfeatures/30-implementin…5bf62b7829bea7145bdbe03…

Jan 6 2019

Oct 17 2018

Oct 12 2018

Oct 11 2018

Oct 10 2018

Oct 9 2018

Oct 5 2018

Oct 4 2018

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Sep 28 2018

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May 30 2018

May 17 2018

May 1 2018

Apr 17 2018

Apr 9 2018

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Mar 23 2018

Mar 20 2018

Mar 15 2018

History
features/30-implementin…5bf62b7829bea7145bdbe03…