Diffusion akantu (features/changes-to-address-joss-review) History

History
features/changes-to…44a04848e239191094885a8…

Mar 18 2020

allow to initialize the material manually
44a04848e239
·anciaux on Mar 18 2020, 16:17.
correct uninitialized values from materials
1ca2a17aa807
·anciaux on Mar 18 2020, 16:16.

Mar 15 2020

some changes to make PBC work again in sequential: to review
f2e4a0fa4491
·anciaux on Mar 15 2020, 09:55.

Mar 13 2020

correct a memory fault problem with the pbc
4da59a0e63c4
·anciaux on Mar 13 2020, 08:35.

Mar 11 2020

use new iterators on types
df6425cb1cd3
·anciaux on Mar 11 2020, 00:09.

Mar 9 2020

set tag upper bound based in MPI_COMM_WORLD
d751a95ffe34
·anciaux on Mar 9 2020, 17:22.

Mar 6 2020

extend communicator creation in akantu
30ae51bad185
·anciaux on Mar 6 2020, 18:20.
Merge commit '6f65103bbed23c65deb66a484bc8fb13f04216f4' into HEAD
5dd81bf14a97
·anciaux on Mar 6 2020, 13:00.

Feb 18 2020

Correcting compilation problem
d5e7e2d9fcb0
·richart on Feb 18 2020, 16:46.
Example of using python as boundary condition
b450f564df7d
·richart on Feb 18 2020, 15:02.
Adding a possibility to insert cohesive element only in some
684f4e9f9da5
·richart on Feb 18 2020, 13:02.

Jan 24 2020

Bug fix in pythonpath
e55ad43b118d
·richart on Jan 24 2020, 16:39.

Jan 23 2020

Correcting install directory for old cmake versions
351de5cb04ec
·richart on Jan 23 2020, 18:19.
Installing python binding and akantu-iterators properly
8b12a8c50daf
·richart on Jan 23 2020, 18:07.

Jan 22 2020

improving the install process
4a17d216cedb
·richart on Jan 22 2020, 18:29.
Merge branch 'master' into 'master'
6f65103bbed2
·richart on Jan 22 2020, 15:02.
fix compilation error for c++17 standard
01e5634d792c
·anciaux on Jan 22 2020, 14:50.

Jan 15 2020

Actually running the examples as tests
f7fc4feca70a
·richart on Jan 15 2020, 18:06.
make the new_material a bit faster
eb1c624aba2f
·richart on Jan 15 2020, 13:26.
factorizing scatter/gather from dof_synchronizer to synchronizer_impl
72bc1b60d6fa
·richart on Jan 15 2020, 13:24.

Jan 10 2020

adding detection of the mpiseq library
658b6fd7fa88
·richart on Jan 10 2020, 13:27.
tuple concat trick
b72970096de0
·richart on Jan 10 2020, 13:19.

Dec 20 2019

Seting policy for the <package>_ROOT variable in the environment
cdbd6f96b11e
·richart on Dec 20 2019, 14:22.
Wrongly protected compilation
3741ee66d19a
·richart on Dec 20 2019, 14:14.

Dec 18 2019

Bug fix in the export of the target akantu
38689942d5bb
·richart on Dec 18 2019, 14:45.

Dec 13 2019

mpi skip mpicxx
668db21aecb0
·richart on Dec 13 2019, 15:51.
extanding SparseMatrix and DOFManager interface in python
0ff570ffbf37
·richart on Dec 13 2019, 15:33.
Make the test work with older version of gtest
ffa47eb473d7
·richart on Dec 13 2019, 14:45.
cleaning lincences and clang-formating
58c60757d33e
·richart on Dec 13 2019, 11:26.
Merge commit '77f80db265988ff43dd2ab40ac712b0ab8053711'
093c0a728b0e
·richart on Dec 13 2019, 10:46.
A bit to aggressive with the clang-tidy
77f80db26598
·richart on Dec 13 2019, 10:45.

Dec 12 2019

Merge commit '7085e4eba3cb6bdc76ba56c87cd3b686039aefaf'
74233cffde18
·richart on Dec 12 2019, 19:20.
Added named_zip
7085e4eba3cb
·richart on Dec 12 2019, 19:16.
tidied and formated version
507f7dbccbdf
·richart on Dec 12 2019, 15:38.
some cleaning to many class in the same file
3889358d690a
·richart on Dec 12 2019, 13:57.

Dec 11 2019

Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private
9af5e8823b34
·richart on Dec 11 2019, 18:37.
The fix for clang breaks gcc
238e081bfa3e
·richart on Dec 11 2019, 18:36.
fixed warning [-Wempty-body] in Mesh::read
b9311d8ff17e
·frerot on Dec 11 2019, 17:35.
bug fix to compile on clang
ff7c24cea62e
·richart on Dec 11 2019, 15:41.
Merge branch 'master' of gitlab.com:akantu/akantu
586f5f155d7a
·richart on Dec 11 2019, 15:30.
Merge commit '64aba083b7feb682b63ea7aba22d000b30666056'
699861af0ea7
·richart on Dec 11 2019, 15:27.

Dec 10 2019

adding support for non gnu compilers
64aba083b7fe
·richart on Dec 10 2019, 21:23.
Adding named_tuples and string_literal
451e39ec639b
·richart on Dec 10 2019, 21:03.
Correcting namespace + warnings
d19afc22171d
·richart on Dec 10 2019, 21:02.

Dec 9 2019

trying to accelerate the ci
c648795f225e
·richart on Dec 9 2019, 17:06.
improving ci
c80efd72a820
·richart on Dec 9 2019, 16:59.
Add .gitlab-ci.yml
48349fadeece
·richart on Dec 9 2019, 16:51.
small improvements in ci
3ad7addae7f2
·richart on Dec 9 2019, 16:38.
inceasing timeouts
74def707432e
·richart on Dec 9 2019, 16:21.
cleaning a bit the repo
48535c34dff3
·richart on Dec 9 2019, 16:11.
Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
fca35ee94278
·richart on Dec 9 2019, 15:51.
Merge commit 'd9766dec5fd1c5eb0b1bbaab9694dc44dcc74f15'
ea1f32bc5f12
·richart on Dec 9 2019, 15:50.
bug fix in the filter iterator
d9766dec5fd1
·richart on Dec 9 2019, 15:08.
Solving the gtest download failing the second time
60ed7290eaa8
·richart on Dec 9 2019, 15:07.
linting
5d55d5612076
·richart on Dec 9 2019, 14:43.
changing the way to do filter adaptor
221e6ca74e8e
·richart on Dec 9 2019, 11:27.
correcting the tests
0c5c265b6584
·richart on Dec 9 2019, 11:15.
flags to specify when akantu runs in docker
3f594cbb3680
·richart on Dec 9 2019, 10:35.

Dec 6 2019

Simplifying the jobs since it fails between caches and makefiles...
f142b17e9176
·richart on Dec 6 2019, 17:00.
cleaning the readme
09b534cfadc6
·richart on Dec 6 2019, 13:53.

Dec 5 2019

wrong variable
2283629c888f
·richart on Dec 5 2019, 18:39.
separating the caches since the are running in parallel
418f0cdcdd93
·richart on Dec 5 2019, 18:26.
style typos in junit
b578a0cb4fe7
·richart on Dec 5 2019, 18:05.
typo in reports
5d475fc77c44
·richart on Dec 5 2019, 18:01.
working on the test reports
ecfeb6b962e3
·richart on Dec 5 2019, 17:57.
Configure seems ok ?
5c6b97f4c8a2
·richart on Dec 5 2019, 17:26.
configure does not produce same output as on test
f5b079a3431a
·richart on Dec 5 2019, 17:20.
trying to figure out caches
e853faf42385
·richart on Dec 5 2019, 16:41.
Went down the rabbit hole of configuring ci
fd67091319e6
·richart on Dec 5 2019, 16:19.
fiddeling with gitlab' ci
09f52dea9329
·richart on Dec 5 2019, 15:30.
Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private
38b6e7a39aff
·richart on Dec 5 2019, 14:45.
adding gitlab ci
a68698997ea2
·richart on Dec 5 2019, 14:34.

Dec 4 2019

make pybind11 work with the system one
8c62f206d530
·richart on Dec 4 2019, 22:31.
Missing include in pybind11
ee95d25f3f67
·richart on Dec 4 2019, 21:56.
do not buildFacets in between constructor and initFull...
d5726d36cee2
·richart on Dec 4 2019, 21:08.
bug fix in case the facet is a boundary facet
fccb500bf91a
·richart on Dec 4 2019, 21:07.
avoiding assigning materials to "no element"
0e809a7ec2c3
·richart on Dec 4 2019, 18:21.
Wrong test marked UNSTABLE
a8efc4cf46fc
·richart on Dec 4 2019, 18:12.
handling properly the default arguments in py_fe_engine
db48d22d8064
·richart on Dec 4 2019, 17:35.
missing headers in py_fe_engine
fb6207862153
·richart on Dec 4 2019, 16:58.
adding method in model python interface
356f1dac21fd
·richart on Dec 4 2019, 15:43.

Dec 3 2019

Adding a missing S
5ac36c978a89
·richart on Dec 3 2019, 18:29.

Dec 2 2019

Report properly tests on Jenkins
04340e532b9c
·richart on Dec 2 2019, 14:53.
Compilation fix when structural elements are not activated
092b290520c2
·richart on Dec 2 2019, 14:51.

Nov 29 2019

UNSTABLE tests
74ea992b45aa
·richart on Nov 29 2019, 18:13.
Reverted a changes that make cohesive element insertion fail in parallel
549557bb86a5
·richart on Nov 29 2019, 18:09.
Securing accessors on pointers
9bdc4bbe7ab0
·richart on Nov 29 2019, 18:09.
Compile with a bit of optimizations to go faster through the tests
87f273ee8dfd
·richart on Nov 29 2019, 15:30.

Nov 28 2019

Improving the cleaning phase ?
1f21882a7371
·richart on Nov 28 2019, 12:24.
cleaning when failling
8ec02b2fbcb9
·richart on Nov 28 2019, 12:10.

Nov 27 2019

Corrected num iter count
dcdb1495214c
·richart on Nov 27 2019, 18:54.
Extending feengine generic api
a7b944d6c817
·richart on Nov 27 2019, 18:54.
Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
525799376c2e
·richart on Nov 27 2019, 15:44.
correcting some tests
c4cc4b4c47dd
·richart on Nov 27 2019, 15:38.
Storing step before solve restoring if solve failed
2d7706576326
·richart on Nov 27 2019, 15:38.
Updating cmake
3b5ad8bc6ce8
·richart on Nov 27 2019, 15:38.
Rewriting the mesh to dual graph generation algorithm
e0974cf6bcc5
·richart on Nov 27 2019, 15:38.
Some cleaning and modernization of the code
ba6837e25b9b
·richart on Nov 27 2019, 15:38.
don't cut the branch on which you sit
657da1256e23
·richart on Nov 27 2019, 14:23.
moved an output file
9597c2542bdf
·richart on Nov 27 2019, 14:17.

Historyfeatures/changes-to…44a04848e239191094885a8…

Mar 18 2020

Mar 15 2020

Mar 13 2020

Mar 11 2020

Mar 9 2020

Mar 6 2020

Feb 18 2020

Jan 24 2020

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Jan 15 2020

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Dec 18 2019

Dec 13 2019

Dec 12 2019

Dec 11 2019

Dec 10 2019

Dec 9 2019

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Nov 29 2019

Nov 28 2019

Nov 27 2019

History
features/changes-to…44a04848e239191094885a8…