Diffusion akantu (features/changes-to-address-joss-review) History

History
features/changes-to…517d428bac6c3afc6ca9db4…

Dec 20 2022

Match version of docker with the one from the runner
517d428bac6c
·richart on Dec 20 2022, 14:15.

Sep 30 2022

Cleaning deprecated code
f3609ba141a0
·richart on Sep 30 2022, 16:36.
Extending cohesive inserter interface
173d75062333
·richart on Sep 30 2022, 16:36.
Remove dead code
be03cb269697
·richart on Sep 30 2022, 14:12.
Adding possibility to set seed in environment
3d31c2ef5df0
·richart on Sep 30 2022, 11:31.
Bug fix in matrix vector product
d9bea8fd5095
·richart on Sep 30 2022, 11:30.

Jul 21 2022

Merge branch 'bugfixes/41-group-not-properly-updated-when-cohesive-elements-are…
fb0acba68469
·richart on Jul 21 2022, 09:48.

Jul 20 2022

Bug fix for element types that are not surface elements
e9572b464dec
·branch: bugfixes/41-group-not-properly-updated-when-cohesive-elements-are-inserted
·richart on Jul 20 2022, 14:52.

Jul 19 2022

Update mesh connectivity to reflect mesh_facets changes
ed25970cd51e
·richart on Jul 19 2022, 16:34.

Jul 12 2022

Merge branch 'bugfixes/43-documentation-problem-with-latex-formatting' into…
45d738031ac0
·anciaux on Jul 12 2022, 15:35.
Not the proper config set for mathjax
a6216dbfb2f1
·branch: bugfixes/43-documentation-problem-with-latex-formatting
·richart on Jul 12 2022, 13:48.
Changed MathJAX config for readthedoc
de2cc3e295f6
·richart on Jul 12 2022, 13:01.

Jul 8 2022

Updates node groups associated to element groups when nodes are doubled to…
b54daa8924d0
·richart on Jul 8 2022, 15:52.
Modifies the return value of add on NodeGroup to solve #42
1b8ce86036c4
·richart on Jul 8 2022, 15:47.

Jun 30 2022

Merge branch 'bugfixes/installation-instructions' into 'master'
65a562501ab3
·tdroch on Jun 30 2022, 14:05.

Jun 29 2022

Correcting a warning at compilation
23afa0f74cab
·branch: bugfixes/installation-instructions
·richart on Jun 29 2022, 22:57.
Python module does not compile with python 3.11
34f9b667ee80
·richart on Jun 29 2022, 22:33.

Jun 10 2022

Typo in zlib
d44f4a69b78d
·richart on Jun 10 2022, 14:48.
Bug fix in the installation instructions and in the option protections
2c20edca9355
·richart on Jun 10 2022, 11:52.

May 13 2022

Merge branch 'bugfixes/version-detection-in-ci' into 'master'
8f70816b5e8c
·richart on May 13 2022, 09:08.
Debugging the version detection in the CI
a309dba7d066
·richart on May 13 2022, 09:08.

May 10 2022

Merge branch 'bugfixes/create_matrices_if_needed_by_user' into 'master'
9d1341e08698
·tdroch on May 10 2022, 11:05.

May 4 2022

Merge branch 'bugfixes/multiple_small_bug_in_contact_mechanics' into 'master'
d849be145a03
·Lucas Frérot on May 4 2022, 16:54.
keeping old version but marking it deprecated
b8b5f49bb76d
·branch: bugfixes/multiple_small_bug_in_contact_mechanics
·richart on May 4 2022, 14:50.

May 3 2022

Changing the version from real to int to avoid exact real comparaison
46de087fc5ed
·richart on May 3 2022, 09:16.
extanding python group interface
e7ba0c1c0ee7
·richart on May 3 2022, 09:16.
Setting properly the model type in contact coupler
d95695ca47b4
·richart on May 3 2022, 09:15.
Bu fix in the material selector
16c7f3f5d1ca
·richart on May 3 2022, 09:14.
Creating submodule for debug and cleaning debug code
af35006dbf96
·richart on May 3 2022, 09:13.

Apr 28 2022

Merge branch 'features/structural_mechanics_lumped_mass' into 'master'
05dfe5c52a09
·richart on Apr 28 2022, 22:37.
Running clang-format for code quality checks
4964c71bb961
·branch: features/structural_mechanics_lumped_mass
·richart on Apr 28 2022, 20:30.
Merge branch 'features/structural_mechanics_lumped_mass' of gitlab.com…
e31f5d848265
·richart on Apr 28 2022, 20:26.
Merge branch 'master' into 'features/structural_mechanics_lumped_mass'
09de0b6e0b49
·richart on Apr 28 2022, 16:30.
Update .gitlab-ci.yml file
09b079271f45
·richart on Apr 28 2022, 16:22.
Merge branch 'bugfixes/Unexpected-behaviour-in-energy-computation-structural…
fb60e2128635
·richart on Apr 28 2022, 14:52.
Merge branch 'master' into bugfixes/Unexpected-behaviour-in-energy-computation…
4f7245f27871
·richart on Apr 28 2022, 12:45.
Merge branch 'master' into 'features/structural_mechanics_lumped_mass'
7ffe79ae43a2
·richart on Apr 28 2022, 12:16.
Merge branch 'bugfixes/detect_mixed_distributed_initialization' into 'master'
8185a160038c
·richart on Apr 28 2022, 09:55.
Apply 2 suggestion(s) to 2 file(s)
56be2315a654
·branch: bugfixes/create_matrices_if_needed_by_user
·phimuell / richart on Apr 28 2022, 09:29.
Apply 1 suggestion(s) to 1 file(s)
96dbd1c1c33c
·branch: bugfixes/detect_mixed_distributed_initialization
·richart / phimuell on Apr 28 2022, 07:20.

Apr 27 2022

Giving access to alpha and beta in NewmarkBeta
f6df60ddf7b7
·richart on Apr 27 2022, 17:34.
Merge branch 'master' into bugfixes/create_matrices_if_needed_by_user
c5fb4eb8f6a9
·richart on Apr 27 2022, 16:24.
Merge branch 'bugfixes/39-the-python-example-for-phasefield-are-broken-due-to-a…
392f7c3dd293
·richart on Apr 27 2022, 16:12.
Making K optional in Newmark-beta for explicit with consistent mass computations
792f29f6d28d
·richart on Apr 27 2022, 11:48.
Merge remote-tracking branch 'akantuGL/bugfixes/39-the-python-example-for…
465a82aa17b6
·Philip Mueller, HS on Apr 27 2022, 10:49.
Run the clang formater.
b5b10351b368
·Philip Mueller, HS on Apr 27 2022, 10:48.
Removed an accessor that is no longer needed.
eaec5d10f288
·Philip Mueller, HS on Apr 27 2022, 10:45.
Fixed a bug.
b64239f821f0
·Philip Mueller, HS on Apr 27 2022, 10:13.
Apply 1 suggestion(s) to 1 file(s)
570532b271ab
·richart / phimuell on Apr 27 2022, 10:06.
Applied more of Nicolas' suggestions.
3db0cf5502c7
·Philip Mueller, HS on Apr 27 2022, 09:59.
Apply 1 suggestion(s) to 1 file(s)
78946eebbd37
·richart / phimuell on Apr 27 2022, 09:46.
Addessed several of Nicolas' comments on GitLab.
678ec54b220c
·Philip Mueller, HS on Apr 27 2022, 09:03.
Apply 1 suggestion(s) to 1 file(s)
ab8a70eff592
·richart / phimuell on Apr 27 2022, 08:02.
Apply 1 suggestion(s) to 1 file(s)
cc6ad0f52582
·richart / phimuell on Apr 27 2022, 08:02.
Apply 1 suggestion(s) to 1 file(s)
a015367b0b7c
·richart / phimuell on Apr 27 2022, 08:02.
Apply 1 suggestion(s) to 1 file(s)
8c8f962ac1c3
·richart / phimuell on Apr 27 2022, 07:57.
Apply 1 suggestion(s) to 1 file(s)
73f4016ec514
·richart / phimuell on Apr 27 2022, 07:56.

Apr 26 2022

Adding the default argument to `setIntegrationScheme`
489f68024a53
·branch: bugfixes/39-the-python-example-for-phasefield-are-broken-due-to-a-change-to-setintegrationscheme
·richart on Apr 26 2022, 22:01.
Merge branch 'master' into features/structural_mechanics_lumped_mass
1f273ed272f8
·richart on Apr 26 2022, 20:43.

Apr 8 2022

Merge branch 'bugfixes/65-Making-the-integrators-available-in-Python' into…
af00844e74fe
·anciaux on Apr 8 2022, 11:10.

Mar 31 2022

Made some small adjuatments in the Python interface.
b619a7464358
·Philip Mueller, HS on Mar 31 2022, 07:59.
Added an alias function for the lumped mass to the structural model.
9890e5b3d6c9
·Philip Mueller, HS on Mar 31 2022, 07:58.
Removed some old functions of mine, that prevented the compilation.
9649c6fd2684
·Philip Mueller, HS on Mar 31 2022, 07:58.

Mar 30 2022

Merge branch 'bugfixes/65-Making-the-integrators-available-in-Python' into…
b6dbd90d648e
·Philip Mueller, HS on Mar 30 2022, 12:53.
Merge branch 'bugfixes/65-Making-the-integrators-available-in-Python' into…
41c92c6b98b7
·Philip Mueller, HS on Mar 30 2022, 12:52.
Fixed some compilation errors in the `python/py_integration_scheme.cc` file.
522a8942da5d
·branch: bugfixes/65-Making-the-integrators-available-in-Python
·Philip Mueller, HS on Mar 30 2022, 12:47.
Fixed the CMake of the Python interface.
6864c9ffb9ca
·Philip Mueller, HS on Mar 30 2022, 10:56.
This commit fixes a bug in the `assembleResidual()` function of the…
de452cb795f1
·Philip Mueller, HS on Mar 30 2022, 10:06.
Updated the implementation of the kinetic energy computation in the solid…
45847f50eb7d
·Philip Mueller, HS on Mar 30 2022, 09:53.
Updated the implementation of the `StructuralMechanicsModel::getKineticEnergy…
b7c85dd2bf05
·Philip Mueller, HS on Mar 30 2022, 09:51.

Mar 25 2022

The structural part now also have the solvers of the continuum.
596a07bedb2d
·Philip Mueller on Mar 25 2022, 16:33.
Fixed a bug in the lumped mass implementation of the structural part.
72e56f3888d3
·Philip Mueller on Mar 25 2022, 16:30.

Mar 24 2022

Fixed a typo.
4a883eb2a210
·phimuell on Mar 24 2022, 07:31.
Removed a misleading comment.
0c52d49647c8
·phimuell on Mar 24 2022, 07:23.

Mar 23 2022

Fixed a bug in the `assembleResidual()` function of the structural mechanics…
1531328d5dcb
·Philip Mueller on Mar 23 2022, 09:06.

Mar 22 2022

Updates the `assembleResidual()` functions of the `StructuralMechanicsModel`.
29b90b0f220d
·Philip Mueller, HS on Mar 22 2022, 13:52.
Updated the behaviour of the `getPotentialEnergy()` and `getKineticEnergy()`…
7be0c4621be1
·Philip Mueller, HS on Mar 22 2022, 13:48.

Mar 20 2022

Added a test for the new event.
7a3e0505d63f
·Philip Mueller, HS on Mar 20 2022, 16:49.
Updated the `DOFManager`, regarding the new event `MeshIsDistributedEvent`.
f01a71ed88a5
·Philip Mueller, HS on Mar 20 2022, 16:48.
Added a new mesh event for the case when the `Mesh` is set to be distributed.
aaed29043102
·Philip Mueller, HS on Mar 20 2022, 16:48.

Mar 18 2022

Making IntegratorScheme available in python
7c8e3eb1d349
·richart on Mar 18 2022, 16:04.
Missing matrix type
809d12911433
·richart on Mar 18 2022, 10:58.
Create the M and K matrices if the assembly function is called directly by the…
b592be01af06
·richart on Mar 18 2022, 10:55.

Mar 15 2022

Added a check to the `initFullImpl()` function of the `Model` to check the…
0dbef4831570
·Philip Mueller, HS on Mar 15 2022, 07:46.
Updated the Python interface of the `Mesh`.
1777d544246a
·Philip Mueller, HS on Mar 15 2022, 07:45.
Updated the `SolverVector` Interface.
a1120eb7be62
·Philip Mueller, HS on Mar 15 2022, 07:43.

Mar 14 2022

Removing debug code
3fbdb1c1064d
·richart on Mar 14 2022, 11:26.

Mar 9 2022

`constepr pi` does not compile on clang
b8bf04d15d77
·richart on Mar 9 2022, 15:40.
Missing override
28e453375af1
·richart on Mar 9 2022, 13:37.

Mar 8 2022

Aligning the code with akantu coding conventions
547c4e3b1cbd
·richart on Mar 8 2022, 22:35.

Feb 25 2022

Compiler are sop picky.
d6cbb7a4852c
·Philip Mueller on Feb 25 2022, 16:21.
Fixed an error in the `isFinite()` implementation of `SolverVector`.
20ecde97aa7a
·Philip Mueller on Feb 25 2022, 13:45.
Updated the Akantu Array.
cbfa2ee4faba
·Philip Mueller on Feb 25 2022, 13:27.
Updated the computation of the Bernulli beams.
030b587794b7
·Philip Mueller on Feb 25 2022, 12:58.
Updated the `SolverVector` class of the Python interface.
237ed1deceae
·Philip Mueller on Feb 25 2022, 12:58.
The `SparseMatrix` class now supports a function for testing if its entries are…
962960572b97
·Philip Mueller on Feb 25 2022, 12:26.
Updated the Python interface of the DOFManager.
22fdfd97576d
·Philip Mueller, HS / Philip Mueller on Feb 25 2022, 12:25.
It is now possible to force the creation of the lumped mass.
dca49f1688f5
·Philip Mueller, HS / Philip Mueller on Feb 25 2022, 12:23.
Implemented a shady way of computing the lumped mass matrix.
e18e82be6b0e
·Philip Mueller, HS / Philip Mueller on Feb 25 2022, 12:22.
Fixed some issues for the array iterator.
aa96d746ff76
·Philip Mueller, HS / Philip Mueller on Feb 25 2022, 12:20.

Historyfeatures/changes-to…517d428bac6c3afc6ca9db4…

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History
features/changes-to…517d428bac6c3afc6ca9db4…