Diffusion akantu (features/changes-to-address-joss-review) History

History
features/changes-to…5aafb992abf75e9433a40db…

Nov 27 2019

correcting some tests
5aafb992abf7
·richart on Nov 27 2019, 15:38.
Storing step before solve restoring if solve failed
125fb50f0497
·richart on Nov 27 2019, 15:38.
Updating cmake
970ac3e26845
·richart on Nov 27 2019, 15:38.
Rewriting the mesh to dual graph generation algorithm
e6f63992680a
·richart on Nov 27 2019, 15:38.
Some cleaning and modernization of the code
f570859554d8
·richart on Nov 27 2019, 15:38.

Nov 11 2019

Adding docker images
81588efb99bd
·richart on Nov 11 2019, 16:47.
Cleaning debug couts
cab6f9eb1023
·richart on Nov 11 2019, 16:28.
Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
7f326650e4d3
·richart on Nov 11 2019, 16:05.
Cleaning unused parameters
d40b01128a4a
·richart on Nov 11 2019, 16:03.
Adding finite deformation materials to patch tests
585ad12eb2d9
·richart on Nov 11 2019, 16:03.
Adding finite deformation test
74624526009d
·richart on Nov 11 2019, 16:02.
aka_iterators simplification
af09af746396
·richart on Nov 11 2019, 16:01.

Nov 7 2019

adding the meshdatamaterialselector handling
ea9f5da46600
·anciaux on Nov 7 2019, 22:17.
Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private
ee1dff673661
·anciaux on Nov 7 2019, 22:16.
Change default to simplify integration
b6d46f5101a7
·richart on Nov 7 2019, 17:28.

Nov 6 2019

Correcting bug introduced in rAKAPRIVe3715c23639b
d5e1ffd77387
·richart on Nov 6 2019, 16:57.
adding a feature for node groups
04aac09fe6af
·anciaux on Nov 6 2019, 15:45.
add library dependence for aka pybind
c8da98a363fb
·anciaux on Nov 6 2019, 14:56.
adding possibilities for the element/node groups
81356e7a12a0
·anciaux on Nov 6 2019, 14:40.
Adding more missing files
570a09d1673a
·richart on Nov 6 2019, 14:33.
Adding missing file
341680976401
·richart on Nov 6 2019, 14:29.

Nov 1 2019

policy CMP0077
e238b95239f9
·richart on Nov 1 2019, 11:17.
Including akantu_iterators as a sub project
a6f878784a5b
·richart on Nov 1 2019, 11:17.

Oct 30 2019

modify gitignore
146d0aec6280
·richart on Oct 30 2019, 16:36.
Add 'third-party/akantu_iterators/' from commit…
fbe055d5bd1a
·richart on Oct 30 2019, 16:33.
cleaning repo to move to sub repo
1d3b143d927f
·richart on Oct 30 2019, 16:32.
Bug fix for cmake > 3.11
5c6d9f803c20
·richart on Oct 30 2019, 16:15.
Minor change to limit the number of cores for the tests
1bdda648109d
·richart on Oct 30 2019, 16:14.

Oct 28 2019

Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
147e1270d175
·richart on Oct 28 2019, 21:26.
Make akantu compile again on ubuntu xenial
7d5788cb11eb
·richart on Oct 28 2019, 21:24.

Oct 24 2019

Activating tests
407edeebc0fd
·richart on Oct 24 2019, 00:06.

Oct 23 2019

adding linters
53b225d01a2c
·richart on Oct 23 2019, 23:59.
moving ci files
5a404e915234
·richart on Oct 23 2019, 23:52.
Adding jenkinsfile
67175e63d6b5
·richart on Oct 23 2019, 23:27.
Add 'test/ci/' from commit 'df23807ae10b118336f2e819c6a205b0704401e5'
1026bc603baf
·richart on Oct 23 2019, 23:20.
initial commit
03e5b87c032b
·richart on Oct 23 2019, 22:49.

Oct 10 2019

fix bug on the group manager python interface
bbbac31366b5
·anciaux on Oct 10 2019, 16:27.

Oct 4 2019

onElementAdded only for elements of the correct dimension
850e6e7cab7d
·richart on Oct 4 2019, 17:09.
Moving the flipFacet call to the mesh facet creation code
9ced33b21085
·richart on Oct 4 2019, 16:50.
minor enhancements
12d6811c677d
·richart on Oct 4 2019, 15:59.
adding info to mesh events
fe9a13297180
·richart on Oct 4 2019, 15:58.
Tangent matrix re-computation a bit more clever
cabfaf40d130
·richart on Oct 4 2019, 15:57.

Oct 1 2019

Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private
6f1602db9de8
·anciaux on Oct 1 2019, 17:57.

Sep 27 2019

dirty hack to allow to dump a numpy array
52e99b106601
·anciaux on Sep 27 2019, 21:49.
saving the test for large rotations
5ad2b577d899
·anciaux on Sep 27 2019, 21:46.
temporary fix to pass a numpy to be dumped
f4c238d2be5e
·anciaux on Sep 27 2019, 21:45.
adding a adddumpfieldexternal
d1ff1a8538d2
·anciaux on Sep 27 2019, 14:57.

Sep 24 2019

adding the example on finite rotation in dynamics
8b4cbff3c1ea
·anciaux on Sep 24 2019, 22:17.
Add 'test/ci/scripts/' from commit 'df23807ae10b118336f2e819c6a205b0704401e5'
dec47ae94661
·richart on Sep 24 2019, 11:13.
splitting repositories
342ac7beecee
·richart on Sep 24 2019, 11:13.
arclinting arclint.py
df23807ae10b
·richart on Sep 24 2019, 11:09.
cleaning usless files
1f8ceb41cdb1
·richart on Sep 24 2019, 11:02.
preparation to split hbm scripts in a different project
41e7f928e7f3
·richart on Sep 24 2019, 10:56.
preparation to split hbm scripts in a different project
9b0b8a6b22b2
·richart on Sep 24 2019, 10:56.
Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
d16bb4b1e67d
·richart on Sep 24 2019, 10:46.

Sep 23 2019

added parser for junit in harbormaster ci scripts
07f320d9a304
·frerot on Sep 23 2019, 15:45.
added parser for junit in harbormaster ci scripts
41d91ae41651
·frerot on Sep 23 2019, 15:45.

Sep 17 2019

bug in the interface
4b00ed89f550
·richart on Sep 17 2019, 17:03.
Bug fix in exclusiveScan in sequential
3fdc4ee052a4
·richart on Sep 17 2019, 13:09.

Sep 4 2019

cleaning the code
8d4effaa2144
·richart on Sep 4 2019, 17:41.

Aug 27 2019

Do not compute shape derivatives on all type in onElementsAdded
dc616972a49a
·richart on Aug 27 2019, 16:55.
linting to make jenkins happy again
b3f8b6dd7ebb
·richart on Aug 27 2019, 16:33.
missed the structural shape functions
2f6c39dd1049
·richart on Aug 27 2019, 16:32.
Limiting the shape functions and integrator to one dimension
00ddecef1c66
·richart on Aug 27 2019, 16:19.

Aug 21 2019

modernizing the code
aceea939d413
·richart on Aug 21 2019, 12:47.
adding some debugging
273de36873a2
·richart on Aug 21 2019, 12:47.
Copying missing file
fb1c462a64eb
·richart on Aug 21 2019, 12:47.
Material selector test correction
de5aab8dbcc3
·richart on Aug 21 2019, 12:46.

Aug 20 2019

bug fix in the profil construction
d9813e44eab2
·richart on Aug 20 2019, 16:21.
Removing useless function + bug fix
4cc5593bbcc3
·richart on Aug 20 2019, 16:08.

Aug 14 2019

trying to compensate google breaking compatibility without change version…
173ad494e739
·richart on Aug 14 2019, 18:54.
Correcting python examples
1b4cc34760d6
·richart on Aug 14 2019, 18:21.
adding types capabilities
506facc40360
·richart on Aug 14 2019, 18:20.
Correcting some stuff in the dumpers
25ce746b01c9
·richart on Aug 14 2019, 18:19.
merge ?
1df7f98dd040
·richart on Aug 14 2019, 17:08.
Modified pybind11 to work also with 2.3
1b5c0762adf5
·richart on Aug 14 2019, 15:33.
Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private
bba624502e8f
·frerot on Aug 14 2019, 10:27.

Aug 13 2019

protected pybind tests if python interface is not activated
8f67ae44aaa2
·frerot on Aug 13 2019, 11:05.

Aug 9 2019

made the getNbDataPerElem more generic
68b36dbdab07
·richart on Aug 9 2019, 19:17.

Jul 23 2019

Make tests faster by not running the examples
85bbe0855508
·richart on Jul 23 2019, 10:30.

Jul 19 2019

Adding more options to ci
9d98a08af0ca
·richart on Jul 19 2019, 18:08.
backward compatibility for pybind11 interface
d0573c64ba77
·richart on Jul 19 2019, 18:03.
Correcting some examples
d813e3429b63
·richart on Jul 19 2019, 18:03.
run parallel examples with mpi
10b7ce394580
·richart on Jul 19 2019, 16:34.
arc lint --everything
7863d49f001b
·richart on Jul 19 2019, 16:32.
arc lint --everything
5cf490a6c1b7
·richart on Jul 19 2019, 16:32.
Making examples testable (just running them nothing fancy)
dd7a93e3d228
·richart on Jul 19 2019, 16:09.
adapt to latest changes
a88fe88b52f9
·richart on Jul 19 2019, 12:09.
removed unused variables
5af31d108e6b
·richart on Jul 19 2019, 12:08.
Trying to figure out the checkout
1fe95d9275e3
·richart on Jul 19 2019, 10:26.

Jul 18 2019

more synthax errors
3e2ce1b3f4ec
·richart on Jul 18 2019, 16:45.
Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
36a1cff1722f
·richart on Jul 18 2019, 16:44.
bug in synthax
77d5e25c4217
·richart on Jul 18 2019, 16:44.
Checkout proper commit
5f91ae6dd213
·richart on Jul 18 2019, 16:42.
skip default checkout
56500b9499ee
·richart on Jul 18 2019, 16:41.
Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private
6cc99d648484
·gallyamov on Jul 18 2019, 16:37.
Remove ghost_type from energy computation
83daca0d40ff
·gallyamov on Jul 18 2019, 16:36.
Removing artifacts
9a7dc4b02c38
·richart on Jul 18 2019, 16:21.
Removed checkout
7165dd3e255b
·richart on Jul 18 2019, 16:19.
adding pytest to docker image
b20bf430bb16
·richart on Jul 18 2019, 16:03.

Historyfeatures/changes-to…5aafb992abf75e9433a40db…

Nov 27 2019

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Aug 27 2019

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History
features/changes-to…5aafb992abf75e9433a40db…