Diffusion akantu (features/changes-to-address-joss-review) History

History
features/changes-to…6e15f4e65858e92204cef09…

Apr 16 2019

still working on the materials for python
6e15f4e65858
·anciaux on Apr 16 2019, 16:08.

Apr 12 2019

started the dev of the materials in python
c2107819fe71
·anciaux on Apr 12 2019, 17:39.
tests good for array, vector and matrix
97c5fc33599c
·anciaux on Apr 12 2019, 17:07.
adding test and dynamic example now working
c2fdaea2317f
·anciaux on Apr 12 2019, 12:34.

Apr 9 2019

fix a compilation problem due to file removal
b56fbddcf7b1
·anciaux on Apr 9 2019, 13:45.
remove the useless namespaces Dirichlet and Neumann
bbddb3bb42f1
·anciaux on Apr 9 2019, 13:42.
good first state for pybind
df0ac98c3b81
·anciaux on Apr 9 2019, 13:41.
good to go with pybind11
b80854eed663
·anciaux on Apr 9 2019, 13:40.
added solidmechanics bcs mesh model
547d68723a68
·anciaux on Apr 9 2019, 11:38.

Apr 8 2019

fix bad merge
ba1d770459b9
·anciaux on Apr 8 2019, 13:13.
Abaqus reader broken with Boost 1.67 (wont fix)
5c67ccc6e23b
·richart / anciaux on Apr 8 2019, 12:43.

Oct 31 2018

Bootstraping the pybind11 code
0cf2524f8f9e
·richart on Oct 31 2018, 10:30.

Oct 18 2018

Protecting path
adda5cb009fb
·richart on Oct 18 2018, 11:28.
Jenkinsfile debugging
d356df49d348
·richart on Oct 18 2018, 11:24.

Oct 17 2018

Adding parameters to the build
d93d78692b7e
·richart on Oct 17 2018, 20:18.
Updated ntn contact to make it compile
86cbcad5ff57
·richart on Oct 17 2018, 20:10.
Cohesive element corretion due to pbc branch merge
c49e61deed71
·richart on Oct 17 2018, 13:50.

Oct 16 2018

Adding computeBarycenters to the python interface
33eaf7cb000e
·richart on Oct 16 2018, 18:16.

Oct 12 2018

Correcting the bug of insertion finite_deformation and dump (again)
091d83ec5d79
·richart on Oct 12 2018, 14:26.

Oct 10 2018

Merge branch 'features/pbc'
0dc284119849
·richart on Oct 10 2018, 10:26.

Oct 9 2018

correcting mesh_io_msh nodedata
e129d486a1a0
·richart on Oct 9 2018, 12:50.

Sep 25 2018

Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
17fde1346772
·richart on Sep 25 2018, 18:06.
Adding the mesh nodal data to the python interface
7b78eda9f30a
·richart on Sep 25 2018, 17:39.

Sep 13 2018

default values for InternalField members
46063ac227c6
·frerot on Sep 13 2018, 18:42.
modernizing InternalField
6068be0bf5d8
·frerot on Sep 13 2018, 13:10.

Sep 12 2018

Adding transform adaptor and nodedata in mesh data
023a4b630b0e
·richart on Sep 12 2018, 13:22.

Sep 5 2018

make periodic debugging
8ec3c922e7ee
·richart on Sep 5 2018, 13:49.
Making compilation work with gcc >= 8
a835a3214c48
·richart on Sep 5 2018, 13:48.

Aug 29 2018

Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
7dc81cfc7ec7
·richart on Aug 29 2018, 14:08.
Adding some functions in the python interface
71beddeb9549
·richart on Aug 29 2018, 14:08.

Aug 15 2018

Expanded the "Compiling your simulation" part of the manual.
a7b87ab7f810
·brink on Aug 15 2018, 15:26.
Sourcing the environment file
cc267756e92b
·richart on Aug 15 2018, 15:11.

Aug 14 2018

modified fe_engine python interface
00b736ea3a6f
·richart on Aug 14 2018, 17:55.
Modified Jenkinsfile to report states
ce27c97d465b
·richart on Aug 14 2018, 17:55.

Aug 10 2018

refactoring fieldTimesShapes in computeNtb
f4dd6b579644
·richart on Aug 10 2018, 16:29.
Few compilation fixes for gcc>=8
ed8607e8f267
·richart on Aug 10 2018, 15:30.

Jul 19 2018

commit to push before vacations: this version is currently broken
327aad04af0a
·richart on Jul 19 2018, 16:57.

Jun 19 2018

Implementing missing function fir makePeriodic
d35974ef9782
·richart on Jun 19 2018, 15:07.
Add google-benchmark for benchmarking
ccded5305f53
·richart on Jun 19 2018, 13:47.
Rewrote the equation numbers to work properly with pbc
d06c0a0487e5
·richart / gallyamov on Jun 19 2018, 12:30.

Jun 17 2018

minor improvements
8b3453beaf64
·• arichart on Jun 17 2018, 23:45.
make it compile in sequential too
f2c01b8dc4fc
·• arichart on Jun 17 2018, 23:45.
Fix for nodeflag change
9d1800564f97
·• arichart on Jun 17 2018, 23:44.
Bug fix if periodic mesh have more than one dof per node
2ec7f7581cc7
·• arichart on Jun 17 2018, 23:44.

Jun 15 2018

Initialize the is_periodic variable
40c729a672b7
·richart on Jun 15 2018, 12:03.
Pre-working stage for PBC:
d4f0b6028779
·richart on Jun 15 2018, 11:02.

Jun 6 2018

added previous state restore on Material
ce2730d54e3e
·frerot on Jun 6 2018, 11:47.
added restore history to InternalField
0fa983932f3b
·frerot on Jun 6 2018, 11:14.

May 30 2018

Multiple changes in order to start implementation of periodicity
033a8225e32a
·richart on May 30 2018, 14:47.

May 17 2018

Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private
6a2d279265ae
·richart on May 17 2018, 17:04.

May 1 2018

added physical names selector to python interface
cf9971ddd98a
·frerot on May 1 2018, 15:50.
removed import mpi4py from python module
0d46473e9018
·frerot on May 1 2018, 15:50.

Apr 17 2018

adding debug info in makePeriodic
ba0d478cf0b3
·richart on Apr 17 2018, 17:53.

Apr 9 2018

Syntax error in mesh.cc DEBUG_ERROR -> ERROR
195608c9be30
·richart on Apr 9 2018, 14:53.

Apr 4 2018

NodeType becomes NodeFlags + node_prank
7d530d027fd0
·richart on Apr 4 2018, 17:53.
Adding BBox
e71e540aaa48
·richart on Apr 4 2018, 17:10.
correction in DynamicCommunicationBuffer
7f933d1c9d7c
·richart on Apr 4 2018, 17:10.
namespace correction
8ea334aed4ad
·richart on Apr 4 2018, 17:10.
order correction in tensors
b9f8cbc2348a
·richart on Apr 4 2018, 17:10.
adding a mesh makePeriodic function
ba18e5860efa
·richart on Apr 4 2018, 17:08.
spacial direction ?
8b22417fb5c7
·richart on Apr 4 2018, 17:07.
Adding a full blown object to treat bounding boxes
a6ae4099f295
·richart on Apr 4 2018, 17:07.
Adding functionality for periodicity in the mesh
11d8a4d1b2c5
·richart on Apr 4 2018, 17:05.
Cleaning the pbc
8c2ead782ac0
·richart on Apr 4 2018, 17:05.
adding linters for python
67a1f1d0977b
·richart on Apr 4 2018, 14:09.
Cleaning the Jenkinsfile
0bbad422f5e2
·richart on Apr 4 2018, 11:19.

Apr 3 2018

Allowing to skip test in gtest
c43899c526cc
·richart on Apr 3 2018, 21:11.
Adapting the test driver to handle extra option for test executable
b2b4f9e7a282
·richart on Apr 3 2018, 20:40.
Trying to analyze gtest results separately
e8d2352f1bba
·richart on Apr 3 2018, 16:51.
Switching output to ctest
6c8e80ac80aa
·richart on Apr 3 2018, 16:06.
Syntax error in email notification
958249a79fbf
·richart on Apr 3 2018, 13:53.
More comments problems
14fefaf44446
·richart on Apr 3 2018, 13:39.
Remaining useless comment
d04d2031c1de
·richart on Apr 3 2018, 13:37.
Attempt to make the test pass with mpi in docker
a974cb7fb24c
·richart on Apr 3 2018, 13:33.

Mar 28 2018

mode syntax errors
7c75df790315
·richart on Mar 28 2018, 20:31.
syntax error in Jenkins file
f76a48447125
·richart on Mar 28 2018, 20:24.
Adding tests and notifications to jenkinsfile
a9630d9994cb
·richart on Mar 28 2018, 20:18.
Added Jenkinsfile
74124d83987c
·richart on Mar 28 2018, 19:51.
Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private
7475e6d06223
·gallyamov on Mar 28 2018, 16:00.
Made cohesive intrinsic example work
372dd18148b4
·gallyamov on Mar 28 2018, 15:58.

Mar 27 2018

Adding cleaning to help debug Jenkinsfile
befcbaadef92
·richart on Mar 27 2018, 20:52.
Adding git and handling mpi codes to not fail even in sequential
c753772b83f5
·richart on Mar 27 2018, 20:44.
More minor changes for tests
2dd4a6dc714b
·richart on Mar 27 2018, 19:57.
More missing packages in docker
6307b3c73a73
·richart on Mar 27 2018, 19:29.
Adapting dockerfile according to best practices
3179fe8fda79
·richart on Mar 27 2018, 19:18.
Adding blas in docker and cd build in jenkins
8121b743d7b6
·richart on Mar 27 2018, 19:06.
More tweaking on the Jenkins file
843de98e3fb7
·richart on Mar 27 2018, 18:19.
Adding docker file
8f35967432b4
·richart on Mar 27 2018, 18:15.
typo in Jenkinsfile
6d8484ee0a8e
·richart on Mar 27 2018, 18:02.
Minor changes int the python insterface
2bbc30b8dd4c
·richart on Mar 27 2018, 17:02.
is_extrinic in python
2bcda32fdee4
·richart on Mar 27 2018, 15:23.

Mar 23 2018

Changes docker image
ede2f5e72ff6
·richart on Mar 23 2018, 17:59.
Initial commit of Jenkinsfile
c675c376462d
·richart on Mar 23 2018, 17:52.

Mar 20 2018

give access to solve step of a given solver
6084ccd718c5
·anciaux on Mar 20 2018, 17:36.
make example compile
c4a3de477515
·anciaux on Mar 20 2018, 17:35.

Mar 15 2018

Fixing bug introduced due to change of behavior when mesh distributed in…
29f36af846c5
·richart on Mar 15 2018, 13:08.
Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private
49572d5f5f6b
·richart on Mar 15 2018, 00:50.
Adding info on how to compil a external simu
9f07cdd93b98
·richart on Mar 15 2018, 00:47.
cleaning the code
e28e345c933b
·richart on Mar 15 2018, 00:26.
More correction to install
6708a9d70aaa
·richart on Mar 15 2018, 00:14.

Historyfeatures/changes-to…6e15f4e65858e92204cef09…

Apr 16 2019

Apr 12 2019

Apr 9 2019

Apr 8 2019

Oct 31 2018

Oct 18 2018

Oct 17 2018

Oct 16 2018

Oct 12 2018

Oct 10 2018

Oct 9 2018

Sep 25 2018

Sep 13 2018

Sep 12 2018

Sep 5 2018

Aug 29 2018

Aug 15 2018

Aug 14 2018

Aug 10 2018

Jul 19 2018

Jun 19 2018

Jun 17 2018

Jun 15 2018

Jun 6 2018

May 30 2018

May 17 2018

May 1 2018

Apr 17 2018

Apr 9 2018

Apr 4 2018

Apr 3 2018

Mar 28 2018

Mar 27 2018

Mar 23 2018

Mar 20 2018

Mar 15 2018

History
features/changes-to…6e15f4e65858e92204cef09…