Diffusion akantu (features/changes-to-address-joss-review) History

History
features/changes-to…8178b1e40e105fadcfb7d37…

Feb 9 2021

Adding MeshAccessor to python and adding posibility to resize meshes
8178b1e40e10
·richart on Feb 9 2021, 00:41.

Feb 8 2021

Bug fix in the python interface of structural model
98e6ec45ecd9
·richart on Feb 8 2021, 21:18.
Initializing properly the element_material
d3f488d7feee
·richart on Feb 8 2021, 20:58.
Linting the python interface
c899d41bc065
·richart on Feb 8 2021, 20:58.
Rewriting the example as a python code, importing the proper code
26c3a5b8f03e
·richart on Feb 8 2021, 20:57.

Feb 5 2021

This commit fixes an error in the Python interface of the model.
88d3df4f3c5e
·Philip Mueller on Feb 5 2021, 09:04.
Added a first try of the test of the Python interface for the structural…
fe9ccceae3d5
·Philip Mueller on Feb 5 2021, 07:14.
This commit fixes an error, at least I think that, in the Python interface of…
4ba9503a3f37
·Philip Mueller on Feb 5 2021, 07:14.
Included the python wrapper of the structural mechanics part into CMake.
e2b06dcbe600
·Philip Mueller on Feb 5 2021, 07:14.
Finalized the work on the Python interface for the structural mechanics part.
b21bd8ea6faa
·Philip Mueller on Feb 5 2021, 07:14.
Added functions to better interact with the material torage of the…
81d5d634d296
·Philip Mueller on Feb 5 2021, 07:14.
Modified the `addMaterial()` function of the `StructuralMechanicsModel`.
bd14ee9d4261
·Philip Mueller on Feb 5 2021, 07:14.
Started with the extension of the Python interface such that it also includes…
d3b901dacdcc
·Philip Mueller, HS / Philip Mueller on Feb 5 2021, 07:14.
Bug fix of dynamics structural elements
e2a9b85e876e
·richart on Feb 5 2021, 00:22.

Feb 1 2021

correcting shapes in _bernouilli beams
fc805b05db5c
·richart on Feb 1 2021, 09:24.
A bit more cleaning
da2c2d3ca841
·richart on Feb 1 2021, 09:20.

Jan 28 2021

Assembling structural elements mass matrix in FEEngine
48c1c478dbae
·richart on Jan 28 2021, 23:46.
Compilation error on ubuntu corrected
96c2c56bc646
·richart on Jan 28 2021, 19:03.
Correcting output in example dynamic
beaa59346f63
·richart on Jan 28 2021, 13:20.
Reactivating mass matrix computation for structural elements
b74014a5dfe8
·richart on Jan 28 2021, 13:00.

Jan 27 2021

Reactivating boundary forces code for structural elements
39c17a8c4fe7
·richart on Jan 27 2021, 00:36.

Jan 22 2021

Adding a bit more messages when detection goes wrong
ad04d05918d4
·richart on Jan 22 2021, 17:30.
Making the "detection" of lib Math more generic
69e6a6b8b066
·richart on Jan 22 2021, 13:14.
Impoving the detection of MUMPS (OpenMP, Math and LAPACK)
065842926eb7
·Philip Mueller / richart on Jan 22 2021, 13:09.

Jan 20 2021

Merge branch 'master' into 'master'
73a8b68b5512
·richart on Jan 20 2021, 18:16.
Correct the akantu config to be correct in spack installation
4c275a228579
·anciaux / richart on Jan 20 2021, 18:16.

Jan 18 2021

Merge branch 'master' of gitlab.com:akantu/akantu
b56858367c28
·anciaux on Jan 18 2021, 18:09.
making link with library ok
0870565fddd9
·anciaux on Jan 18 2021, 18:05.
adding setup.py.in
264488a89fd1
·anciaux on Jan 18 2021, 16:48.
update the dockerfile for centos
8d1164b286e0
·anciaux on Jan 18 2021, 16:48.

Jan 15 2021

Protect files that are not generated so cmake does not tries to install them
51dda7e0bc1d
·richart on Jan 15 2021, 16:49.
Missed to add threads in potential dependencies
037f267f627c
·richart on Jan 15 2021, 16:18.
Threads is a non conventional package from cmake
627a23c29df7
·richart on Jan 15 2021, 16:01.
Adding pthread in the possible dependencies of mumps
f59c4437da8e
·richart on Jan 15 2021, 15:56.

Nov 18 2020

Merge branch 'features/ci_improvement' into 'master'
1a7b1e2153f4
·richart on Nov 18 2020, 13:42.
Missed one TYPED_TEST_SUITE
69b4d1f18bf5
·richart on Nov 18 2020, 12:37.
More variadic macro solved without hiding them
c1084030fd96
·richart on Nov 18 2020, 11:22.
more cleaning
8035ce763fce
·richart on Nov 18 2020, 00:48.
Bumping version number since this branch brings API breaking changes
725a79223a34
·richart on Nov 18 2020, 00:40.
Small cleaning touches
5ac56912d2cb
·richart on Nov 18 2020, 00:40.

Nov 17 2020

report not working properly
5176460968fa
·richart on Nov 17 2020, 23:35.
Bug fix when not in debug
e9bcfea33128
·richart on Nov 17 2020, 23:20.
Reoving editorconfig from codeclimate
e2fed5339880
·richart on Nov 17 2020, 17:57.
Trying out Code Quality
32f63a5c5480
·richart on Nov 17 2020, 17:04.
Adding code coverage
da42e172aec1
·richart on Nov 17 2020, 16:17.
Protecting lambda not used in NDEBUG
ca8b0916b687
·richart on Nov 17 2020, 14:37.
Removing warning in py_material RTFM...
e13ac132d985
·richart on Nov 17 2020, 14:35.
compilation bug fix when mpi is off
2491c2214859
·richart on Nov 17 2020, 12:57.
some linting
10560320f49d
·richart on Nov 17 2020, 12:57.
removing warnings in py_material
8f1d14ec176b
·richart on Nov 17 2020, 12:57.
still not enough time
986fb0107000
·richart on Nov 17 2020, 02:27.
Extend timeout for tests runing in debug
8c4c14ccba46
·richart on Nov 17 2020, 00:52.

Nov 16 2020

Bug fix in the eigen-gradu, with cohesive elements
30d41afebedb
·richart on Nov 16 2020, 23:02.
Debug in order to be able to do some coverage later on
7824bde4aa81
·richart on Nov 16 2020, 10:03.
Trying to solve the problem of artefacts
fef91f6b2215
·richart on Nov 16 2020, 09:04.

Nov 14 2020

keeping artefacts longer
3443a944cf43
·richart on Nov 14 2020, 12:39.

Nov 13 2020

improving ccache cache hits:
e06b8ab29c69
·richart on Nov 13 2020, 22:38.
Bug fix: rebase conflit resolution
64fb0b466ebe
·richart on Nov 13 2020, 19:45.
sharing ccache in between builds
e56d3c31e766
·richart on Nov 13 2020, 18:26.
Missing marco definition for pybind11
b3bb1a6f112e
·richart on Nov 13 2020, 18:26.
Warning in pybind11
327367782b0e
·richart on Nov 13 2020, 18:26.
Correcting deprecated pybind code
3ae228d1e7a7
·richart on Nov 13 2020, 18:26.
Minor improvements to help debugging
92684d20aee0
·richart on Nov 13 2020, 18:26.
bug fix in mesh distribution
e6cb89c743c8
·richart on Nov 13 2020, 18:26.
Bug fix in size computation
7fe6b3c3c105
·richart on Nov 13 2020, 18:25.
bug fix in parallel test_cohesive
ff307afb5ce4
·richart on Nov 13 2020, 18:25.
bug fix in the insertion of 3d elements
cf7c4837cb90
·richart on Nov 13 2020, 18:25.
Full rewrite of cohesive insertion to ensure the order of insertion across…
36b61f922c3e
·richart on Nov 13 2020, 18:25.
Test fix when no implicit solver present
fad101f38cd4
·richart on Nov 13 2020, 18:25.
Bug fix
e67b19e9c27e
·richart on Nov 13 2020, 18:25.
Accounting for stupid version of compilers
996fba290d56
·richart on Nov 13 2020, 18:25.
Remaining semicolon
e430cc0cba3c
·richart on Nov 13 2020, 18:25.
clang-tidy
2494dc4e9df3
·richart on Nov 13 2020, 18:25.
Modified visibility and headers in pybind interface
ce37131bcd4f
·richart on Nov 13 2020, 18:25.
This closes #1, problem with `-j auto` in versions prior to 1.7
2d642dd472d8
·richart on Nov 13 2020, 18:25.
Bug fix in non_local cleanup
a7cedbf9906c
·richart on Nov 13 2020, 18:25.
A bit of cleanup of the code
18bc82b3bd6a
·richart on Nov 13 2020, 18:25.
Change in pybind11 compilation
d0b63cea21e3
·richart on Nov 13 2020, 12:03.
Missing openmpi configuration and renaing of docker config folders
e8e7d2bf51f7
·richart on Nov 13 2020, 12:03.
Bug fixes and compilation warning cleaning:
1f6666b97403
·richart on Nov 13 2020, 12:03.
[ci] Extanding the ci:
1ca3bf659e84
·richart on Nov 13 2020, 12:03.
Adding git information to the code
5cc4b76ac4b6
·richart on Nov 13 2020, 12:02.
Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private into master
8f5380fd35d3
·richart on Nov 13 2020, 09:54.

Oct 8 2020

Changed the way eigen grad u can be set from the material file
baacd6b48076
·richart on Oct 8 2020, 18:58.
Merge branch 'master' of gitlab.com:akantu/akantu into HEAD
23f4ae96ca18
·anciaux on Oct 8 2020, 15:34.
register the eigen gradu as a material parameter
5c8a4684bc7f
·anciaux on Oct 8 2020, 15:33.

Oct 6 2020

Merge branch 'ganciaux/akantu-master' into master
55646041beef
·richart on Oct 6 2020, 13:54.

Oct 1 2020

Fixed a configuration error in cmake seen on centos8, cmake-3.11.4
eeeed5ece489
·anciaux on Oct 1 2020, 17:41.

Jul 21 2020

Bug fix
5cae7298abb3
·richart on Jul 21 2020, 10:39.
Extanding the python interface of FEEngine and cohesive element
f7d749d67510
·richart on Jul 21 2020, 09:29.

Jun 25 2020

Merge branch 'master' of gitlab.com:akantu/akantu
a4d44e4da579
·richart on Jun 25 2020, 20:25.
Correction for cmake 3.10
f1e8f3e6fe75
·richart on Jun 25 2020, 20:24.

Jun 23 2020

remove prank and psize from communicator.hh
3fb8ce4a66af
·anciaux on Jun 23 2020, 14:06.

Jun 17 2020

fix rotation wrongly inserted in the natural coordinates for tetrahedron4
04f84f3897ff
·anciaux on Jun 17 2020, 17:24.
raise threshold strain for modeI insertion check
6c2319dba2b2
·anciaux on Jun 17 2020, 17:24.

Jun 8 2020

Bug fixed : multiple cohesive materials in extrinsic insertion
03d3e280c971
·pundir on Jun 8 2020, 18:14.

May 8 2020

[doc] making the config a bit more generic
4bf20f1e8c72
·richart on May 8 2020, 17:02.
[doc] removing unused files
1a968ca404b5
·richart on May 8 2020, 17:02.

May 7 2020

[doc] using existing doxygen index for namespace akantu
c093aeb2cc0f
·frerot on May 7 2020, 22:30.
[doc] integrating sphinx user manual with cmake-built doc
a8db5fc939de
·frerot on May 7 2020, 22:08.

Historyfeatures/changes-to…8178b1e40e105fadcfb7d37…

Feb 9 2021

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Feb 1 2021

Jan 28 2021

Jan 27 2021

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Nov 14 2020

Nov 13 2020

Oct 8 2020

Oct 6 2020

Oct 1 2020

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Jun 23 2020

Jun 17 2020

Jun 8 2020

May 8 2020

May 7 2020

History
features/changes-to…8178b1e40e105fadcfb7d37…