Diffusion akantu (features/changes-to-address-joss-review) History

History
features/changes-to…8b2393966ca696467bd2189…

Mar 6 2021

Adding energy computations
8b2393966ca6
·richart on Mar 6 2021, 19:30.
Adding capability to add matrix to matrix
b9626220d63d
·richart on Mar 6 2021, 19:28.

Mar 4 2021

Adding capability to register materials by name
23a4eb17ac12
·richart on Mar 4 2021, 13:50.

Mar 3 2021

Merge branch 'bugfixes/dynamics_structural_mechnanics' of gitlab.com…
f27e60b770cd
·richart on Mar 3 2021, 15:49.
Updated the Interface of the mesh to allow the creation of the `extra_normal`…
b4da2bec742f
·Philip Mueller, HS on Mar 3 2021, 10:03.

Feb 25 2021

Bug found in the structural mechanics model
846fa0c86ab1
·richart on Feb 25 2021, 00:15.

Feb 24 2021

Adding solvers to the python interface
b37d88658024
·richart on Feb 24 2021, 12:59.
Adding structural test dynamic example
0f9b429a7a40
·richart on Feb 24 2021, 12:58.

Feb 23 2021

Added a new demonstration of the Python interface of the structural model.
c2f8664968f2
·Philip Mueller, HS on Feb 23 2021, 12:01.

Feb 22 2021

Fixed the test `test_structural_mechanics_gtest`.
e3ae5e06016f
·Philip Mueller, HS on Feb 22 2021, 15:14.

Feb 20 2021

Created a constructor for the Python version of the `StructuralMaterial`.
90b085f6bff5
·Philip Mueller on Feb 20 2021, 13:48.
Updated the Python example for teh structural mechanics.
08552281d80c
·Philip Mueller on Feb 20 2021, 13:48.
Added a second example for the Python structural mechanics part.
20b2c5957575
·Philip Mueller on Feb 20 2021, 13:30.
Continuued to change the Python test for the structural mechanics part.
bb5ed96f3c75
·Philip Mueller on Feb 20 2021, 13:30.
Fixed a typo in the CMake for generating the tests for the structural mechanics…
f3139768cd07
·Philip Mueller on Feb 20 2021, 13:30.
Updated the python interface example.
d73c423b1e45
·Philip Mueller on Feb 20 2021, 13:29.

Feb 19 2021

Corrected the Python interface of the structural mechanic wrapper.
a1a3d3e1f37c
·Philip Mueller on Feb 19 2021, 13:04.
Added the `addConnectivityType()` function to the Python mesh interface.
d128c8f2a50c
·Philip Mueller on Feb 19 2021, 13:03.
This commit fixes several bugs in the the implementation of the Python…
729a820968e3
·Philip Mueller on Feb 19 2021, 13:03.

Feb 9 2021

Fixed a bug in the import statement of the structural mechanics Python…
79c5a89e7f62
·Philip Mueller, HS on Feb 9 2021, 09:27.
restored hermite shapes
34cdde4a0ef8
·richart on Feb 9 2021, 00:42.
Refactored python tests
d44cbf7a0117
·richart on Feb 9 2021, 00:41.
Adding MeshAccessor to python and adding posibility to resize meshes
8178b1e40e10
·richart on Feb 9 2021, 00:41.

Feb 8 2021

Bug fix in the python interface of structural model
98e6ec45ecd9
·richart on Feb 8 2021, 21:18.
Initializing properly the element_material
d3f488d7feee
·richart on Feb 8 2021, 20:58.
Linting the python interface
c899d41bc065
·richart on Feb 8 2021, 20:58.
Rewriting the example as a python code, importing the proper code
26c3a5b8f03e
·richart on Feb 8 2021, 20:57.

Feb 5 2021

This commit fixes an error in the Python interface of the model.
88d3df4f3c5e
·Philip Mueller on Feb 5 2021, 09:04.
Added a first try of the test of the Python interface for the structural…
fe9ccceae3d5
·Philip Mueller on Feb 5 2021, 07:14.
This commit fixes an error, at least I think that, in the Python interface of…
4ba9503a3f37
·Philip Mueller on Feb 5 2021, 07:14.
Included the python wrapper of the structural mechanics part into CMake.
e2b06dcbe600
·Philip Mueller on Feb 5 2021, 07:14.
Finalized the work on the Python interface for the structural mechanics part.
b21bd8ea6faa
·Philip Mueller on Feb 5 2021, 07:14.
Added functions to better interact with the material torage of the…
81d5d634d296
·Philip Mueller on Feb 5 2021, 07:14.
Modified the `addMaterial()` function of the `StructuralMechanicsModel`.
bd14ee9d4261
·Philip Mueller on Feb 5 2021, 07:14.
Started with the extension of the Python interface such that it also includes…
d3b901dacdcc
·Philip Mueller, HS / Philip Mueller on Feb 5 2021, 07:14.
Bug fix of dynamics structural elements
e2a9b85e876e
·richart on Feb 5 2021, 00:22.

Feb 1 2021

correcting shapes in _bernouilli beams
fc805b05db5c
·richart on Feb 1 2021, 09:24.
A bit more cleaning
da2c2d3ca841
·richart on Feb 1 2021, 09:20.

Jan 28 2021

Assembling structural elements mass matrix in FEEngine
48c1c478dbae
·richart on Jan 28 2021, 23:46.
Compilation error on ubuntu corrected
96c2c56bc646
·richart on Jan 28 2021, 19:03.
Correcting output in example dynamic
beaa59346f63
·richart on Jan 28 2021, 13:20.
Reactivating mass matrix computation for structural elements
b74014a5dfe8
·richart on Jan 28 2021, 13:00.

Jan 27 2021

Reactivating boundary forces code for structural elements
39c17a8c4fe7
·richart on Jan 27 2021, 00:36.

Jan 22 2021

Adding a bit more messages when detection goes wrong
ad04d05918d4
·richart on Jan 22 2021, 17:30.
Making the "detection" of lib Math more generic
69e6a6b8b066
·richart on Jan 22 2021, 13:14.
Impoving the detection of MUMPS (OpenMP, Math and LAPACK)
065842926eb7
·Philip Mueller / richart on Jan 22 2021, 13:09.

Jan 20 2021

Merge branch 'master' into 'master'
73a8b68b5512
·richart on Jan 20 2021, 18:16.
Correct the akantu config to be correct in spack installation
4c275a228579
·anciaux / richart on Jan 20 2021, 18:16.

Jan 18 2021

Merge branch 'master' of gitlab.com:akantu/akantu
b56858367c28
·anciaux on Jan 18 2021, 18:09.
making link with library ok
0870565fddd9
·anciaux on Jan 18 2021, 18:05.
adding setup.py.in
264488a89fd1
·anciaux on Jan 18 2021, 16:48.
update the dockerfile for centos
8d1164b286e0
·anciaux on Jan 18 2021, 16:48.

Jan 15 2021

Protect files that are not generated so cmake does not tries to install them
51dda7e0bc1d
·richart on Jan 15 2021, 16:49.
Missed to add threads in potential dependencies
037f267f627c
·richart on Jan 15 2021, 16:18.
Threads is a non conventional package from cmake
627a23c29df7
·richart on Jan 15 2021, 16:01.
Adding pthread in the possible dependencies of mumps
f59c4437da8e
·richart on Jan 15 2021, 15:56.

Nov 18 2020

Merge branch 'features/ci_improvement' into 'master'
1a7b1e2153f4
·richart on Nov 18 2020, 13:42.
Missed one TYPED_TEST_SUITE
69b4d1f18bf5
·richart on Nov 18 2020, 12:37.
More variadic macro solved without hiding them
c1084030fd96
·richart on Nov 18 2020, 11:22.
more cleaning
8035ce763fce
·richart on Nov 18 2020, 00:48.
Bumping version number since this branch brings API breaking changes
725a79223a34
·richart on Nov 18 2020, 00:40.
Small cleaning touches
5ac56912d2cb
·richart on Nov 18 2020, 00:40.

Nov 17 2020

report not working properly
5176460968fa
·richart on Nov 17 2020, 23:35.
Bug fix when not in debug
e9bcfea33128
·richart on Nov 17 2020, 23:20.
Reoving editorconfig from codeclimate
e2fed5339880
·richart on Nov 17 2020, 17:57.
Trying out Code Quality
32f63a5c5480
·richart on Nov 17 2020, 17:04.
Adding code coverage
da42e172aec1
·richart on Nov 17 2020, 16:17.
Protecting lambda not used in NDEBUG
ca8b0916b687
·richart on Nov 17 2020, 14:37.
Removing warning in py_material RTFM...
e13ac132d985
·richart on Nov 17 2020, 14:35.
compilation bug fix when mpi is off
2491c2214859
·richart on Nov 17 2020, 12:57.
some linting
10560320f49d
·richart on Nov 17 2020, 12:57.
removing warnings in py_material
8f1d14ec176b
·richart on Nov 17 2020, 12:57.
still not enough time
986fb0107000
·richart on Nov 17 2020, 02:27.
Extend timeout for tests runing in debug
8c4c14ccba46
·richart on Nov 17 2020, 00:52.

Nov 16 2020

Bug fix in the eigen-gradu, with cohesive elements
30d41afebedb
·richart on Nov 16 2020, 23:02.
Debug in order to be able to do some coverage later on
7824bde4aa81
·richart on Nov 16 2020, 10:03.
Trying to solve the problem of artefacts
fef91f6b2215
·richart on Nov 16 2020, 09:04.

Nov 14 2020

keeping artefacts longer
3443a944cf43
·richart on Nov 14 2020, 12:39.

Nov 13 2020

improving ccache cache hits:
e06b8ab29c69
·richart on Nov 13 2020, 22:38.
Bug fix: rebase conflit resolution
64fb0b466ebe
·richart on Nov 13 2020, 19:45.
sharing ccache in between builds
e56d3c31e766
·richart on Nov 13 2020, 18:26.
Missing marco definition for pybind11
b3bb1a6f112e
·richart on Nov 13 2020, 18:26.
Warning in pybind11
327367782b0e
·richart on Nov 13 2020, 18:26.
Correcting deprecated pybind code
3ae228d1e7a7
·richart on Nov 13 2020, 18:26.
Minor improvements to help debugging
92684d20aee0
·richart on Nov 13 2020, 18:26.
bug fix in mesh distribution
e6cb89c743c8
·richart on Nov 13 2020, 18:26.
Bug fix in size computation
7fe6b3c3c105
·richart on Nov 13 2020, 18:25.
bug fix in parallel test_cohesive
ff307afb5ce4
·richart on Nov 13 2020, 18:25.
bug fix in the insertion of 3d elements
cf7c4837cb90
·richart on Nov 13 2020, 18:25.
Full rewrite of cohesive insertion to ensure the order of insertion across…
36b61f922c3e
·richart on Nov 13 2020, 18:25.
Test fix when no implicit solver present
fad101f38cd4
·richart on Nov 13 2020, 18:25.
Bug fix
e67b19e9c27e
·richart on Nov 13 2020, 18:25.
Accounting for stupid version of compilers
996fba290d56
·richart on Nov 13 2020, 18:25.
Remaining semicolon
e430cc0cba3c
·richart on Nov 13 2020, 18:25.
clang-tidy
2494dc4e9df3
·richart on Nov 13 2020, 18:25.
Modified visibility and headers in pybind interface
ce37131bcd4f
·richart on Nov 13 2020, 18:25.
This closes #1, problem with `-j auto` in versions prior to 1.7
2d642dd472d8
·richart on Nov 13 2020, 18:25.
Bug fix in non_local cleanup
a7cedbf9906c
·richart on Nov 13 2020, 18:25.
A bit of cleanup of the code
18bc82b3bd6a
·richart on Nov 13 2020, 18:25.
Change in pybind11 compilation
d0b63cea21e3
·richart on Nov 13 2020, 12:03.

Historyfeatures/changes-to…8b2393966ca696467bd2189…

Mar 6 2021

Mar 4 2021

Mar 3 2021

Feb 25 2021

Feb 24 2021

Feb 23 2021

Feb 22 2021

Feb 20 2021

Feb 19 2021

Feb 9 2021

Feb 8 2021

Feb 5 2021

Feb 1 2021

Jan 28 2021

Jan 27 2021

Jan 22 2021

Jan 20 2021

Jan 18 2021

Jan 15 2021

Nov 18 2020

Nov 17 2020

Nov 16 2020

Nov 14 2020

Nov 13 2020

History
features/changes-to…8b2393966ca696467bd2189…