Diffusion akantu (features/changes-to-address-joss-review) History

History
features/changes-to…d846de9e46df43ed106f91a…

Oct 14 2022

Solving the code-quality docker problem
d846de9e46df
·branch: bugfixes/bug-fix-in-contact-and-interface-extension
·richart on Oct 14 2022, 12:27.
Adding possibility to write a cohesive material in python
24b44a6c9180
·richart on Oct 14 2022, 11:08.

Oct 6 2022

Missing part in the mesh interface
327856a9918d
·richart on Oct 6 2022, 15:29.

Sep 30 2022

Cleaning deprecated code
f3609ba141a0
·richart on Sep 30 2022, 16:36.
Extending cohesive inserter interface
173d75062333
·richart on Sep 30 2022, 16:36.
Remove dead code
be03cb269697
·richart on Sep 30 2022, 14:12.
Adding possibility to set seed in environment
3d31c2ef5df0
·richart on Sep 30 2022, 11:31.
Bug fix in matrix vector product
d9bea8fd5095
·richart on Sep 30 2022, 11:30.

Jul 21 2022

Merge branch 'bugfixes/41-group-not-properly-updated-when-cohesive-elements-are…
fb0acba68469
·richart on Jul 21 2022, 09:48.

Jul 20 2022

Bug fix for element types that are not surface elements
e9572b464dec
·branch: bugfixes/41-group-not-properly-updated-when-cohesive-elements-are-inserted
·richart on Jul 20 2022, 14:52.

Jul 19 2022

Update mesh connectivity to reflect mesh_facets changes
ed25970cd51e
·richart on Jul 19 2022, 16:34.

Jul 12 2022

Merge branch 'bugfixes/43-documentation-problem-with-latex-formatting' into…
45d738031ac0
·anciaux on Jul 12 2022, 15:35.
Not the proper config set for mathjax
a6216dbfb2f1
·branch: bugfixes/43-documentation-problem-with-latex-formatting
·richart on Jul 12 2022, 13:48.
Changed MathJAX config for readthedoc
de2cc3e295f6
·richart on Jul 12 2022, 13:01.

Jul 8 2022

Updates node groups associated to element groups when nodes are doubled to…
b54daa8924d0
·richart on Jul 8 2022, 15:52.
Modifies the return value of add on NodeGroup to solve #42
1b8ce86036c4
·richart on Jul 8 2022, 15:47.

Jun 30 2022

Merge branch 'bugfixes/installation-instructions' into 'master'
65a562501ab3
·tdroch on Jun 30 2022, 14:05.

Jun 29 2022

Correcting a warning at compilation
23afa0f74cab
·branch: bugfixes/installation-instructions
·richart on Jun 29 2022, 22:57.
Python module does not compile with python 3.11
34f9b667ee80
·richart on Jun 29 2022, 22:33.

Jun 10 2022

Typo in zlib
d44f4a69b78d
·richart on Jun 10 2022, 14:48.
Bug fix in the installation instructions and in the option protections
2c20edca9355
·richart on Jun 10 2022, 11:52.

May 13 2022

Merge branch 'bugfixes/version-detection-in-ci' into 'master'
8f70816b5e8c
·richart on May 13 2022, 09:08.
Debugging the version detection in the CI
a309dba7d066
·richart on May 13 2022, 09:08.

May 10 2022

Merge branch 'bugfixes/create_matrices_if_needed_by_user' into 'master'
9d1341e08698
·tdroch on May 10 2022, 11:05.

May 4 2022

Merge branch 'bugfixes/multiple_small_bug_in_contact_mechanics' into 'master'
d849be145a03
·Lucas Frérot on May 4 2022, 16:54.
keeping old version but marking it deprecated
b8b5f49bb76d
·branch: bugfixes/multiple_small_bug_in_contact_mechanics
·richart on May 4 2022, 14:50.

May 3 2022

Changing the version from real to int to avoid exact real comparaison
46de087fc5ed
·richart on May 3 2022, 09:16.
extanding python group interface
e7ba0c1c0ee7
·richart on May 3 2022, 09:16.
Setting properly the model type in contact coupler
d95695ca47b4
·richart on May 3 2022, 09:15.
Bu fix in the material selector
16c7f3f5d1ca
·richart on May 3 2022, 09:14.
Creating submodule for debug and cleaning debug code
af35006dbf96
·richart on May 3 2022, 09:13.

Apr 28 2022

Merge branch 'features/structural_mechanics_lumped_mass' into 'master'
05dfe5c52a09
·richart on Apr 28 2022, 22:37.
Running clang-format for code quality checks
4964c71bb961
·branch: features/structural_mechanics_lumped_mass
·richart on Apr 28 2022, 20:30.
Merge branch 'features/structural_mechanics_lumped_mass' of gitlab.com…
e31f5d848265
·richart on Apr 28 2022, 20:26.
Merge branch 'master' into 'features/structural_mechanics_lumped_mass'
09de0b6e0b49
·richart on Apr 28 2022, 16:30.
Update .gitlab-ci.yml file
09b079271f45
·richart on Apr 28 2022, 16:22.
Merge branch 'bugfixes/Unexpected-behaviour-in-energy-computation-structural…
fb60e2128635
·richart on Apr 28 2022, 14:52.
Merge branch 'master' into bugfixes/Unexpected-behaviour-in-energy-computation…
4f7245f27871
·richart on Apr 28 2022, 12:45.
Merge branch 'master' into 'features/structural_mechanics_lumped_mass'
7ffe79ae43a2
·richart on Apr 28 2022, 12:16.
Merge branch 'bugfixes/detect_mixed_distributed_initialization' into 'master'
8185a160038c
·richart on Apr 28 2022, 09:55.
Apply 2 suggestion(s) to 2 file(s)
56be2315a654
·branch: bugfixes/create_matrices_if_needed_by_user
·phimuell / richart on Apr 28 2022, 09:29.
Apply 1 suggestion(s) to 1 file(s)
96dbd1c1c33c
·branch: bugfixes/detect_mixed_distributed_initialization
·richart / phimuell on Apr 28 2022, 07:20.

Apr 27 2022

Giving access to alpha and beta in NewmarkBeta
f6df60ddf7b7
·richart on Apr 27 2022, 17:34.
Merge branch 'master' into bugfixes/create_matrices_if_needed_by_user
c5fb4eb8f6a9
·richart on Apr 27 2022, 16:24.
Merge branch 'bugfixes/39-the-python-example-for-phasefield-are-broken-due-to-a…
392f7c3dd293
·richart on Apr 27 2022, 16:12.
Making K optional in Newmark-beta for explicit with consistent mass computations
792f29f6d28d
·richart on Apr 27 2022, 11:48.
Merge remote-tracking branch 'akantuGL/bugfixes/39-the-python-example-for…
465a82aa17b6
·Philip Mueller, HS on Apr 27 2022, 10:49.
Run the clang formater.
b5b10351b368
·Philip Mueller, HS on Apr 27 2022, 10:48.
Removed an accessor that is no longer needed.
eaec5d10f288
·Philip Mueller, HS on Apr 27 2022, 10:45.
Fixed a bug.
b64239f821f0
·Philip Mueller, HS on Apr 27 2022, 10:13.
Apply 1 suggestion(s) to 1 file(s)
570532b271ab
·richart / phimuell on Apr 27 2022, 10:06.
Applied more of Nicolas' suggestions.
3db0cf5502c7
·Philip Mueller, HS on Apr 27 2022, 09:59.
Apply 1 suggestion(s) to 1 file(s)
78946eebbd37
·richart / phimuell on Apr 27 2022, 09:46.
Addessed several of Nicolas' comments on GitLab.
678ec54b220c
·Philip Mueller, HS on Apr 27 2022, 09:03.
Apply 1 suggestion(s) to 1 file(s)
ab8a70eff592
·richart / phimuell on Apr 27 2022, 08:02.
Apply 1 suggestion(s) to 1 file(s)
cc6ad0f52582
·richart / phimuell on Apr 27 2022, 08:02.
Apply 1 suggestion(s) to 1 file(s)
a015367b0b7c
·richart / phimuell on Apr 27 2022, 08:02.
Apply 1 suggestion(s) to 1 file(s)
8c8f962ac1c3
·richart / phimuell on Apr 27 2022, 07:57.
Apply 1 suggestion(s) to 1 file(s)
73f4016ec514
·richart / phimuell on Apr 27 2022, 07:56.

Apr 26 2022

Adding the default argument to `setIntegrationScheme`
489f68024a53
·branch: bugfixes/39-the-python-example-for-phasefield-are-broken-due-to-a-change-to-setintegrationscheme
·richart on Apr 26 2022, 22:01.
Merge branch 'master' into features/structural_mechanics_lumped_mass
1f273ed272f8
·richart on Apr 26 2022, 20:43.

Apr 8 2022

Merge branch 'bugfixes/65-Making-the-integrators-available-in-Python' into…
af00844e74fe
·anciaux on Apr 8 2022, 11:10.

Mar 31 2022

Made some small adjuatments in the Python interface.
b619a7464358
·Philip Mueller, HS on Mar 31 2022, 07:59.
Added an alias function for the lumped mass to the structural model.
9890e5b3d6c9
·Philip Mueller, HS on Mar 31 2022, 07:58.
Removed some old functions of mine, that prevented the compilation.
9649c6fd2684
·Philip Mueller, HS on Mar 31 2022, 07:58.

Mar 30 2022

Merge branch 'bugfixes/65-Making-the-integrators-available-in-Python' into…
b6dbd90d648e
·Philip Mueller, HS on Mar 30 2022, 12:53.
Merge branch 'bugfixes/65-Making-the-integrators-available-in-Python' into…
41c92c6b98b7
·Philip Mueller, HS on Mar 30 2022, 12:52.
Fixed some compilation errors in the `python/py_integration_scheme.cc` file.
522a8942da5d
·branch: bugfixes/65-Making-the-integrators-available-in-Python
·Philip Mueller, HS on Mar 30 2022, 12:47.
Fixed the CMake of the Python interface.
6864c9ffb9ca
·Philip Mueller, HS on Mar 30 2022, 10:56.
This commit fixes a bug in the `assembleResidual()` function of the…
de452cb795f1
·Philip Mueller, HS on Mar 30 2022, 10:06.
Updated the implementation of the kinetic energy computation in the solid…
45847f50eb7d
·Philip Mueller, HS on Mar 30 2022, 09:53.
Updated the implementation of the `StructuralMechanicsModel::getKineticEnergy…
b7c85dd2bf05
·Philip Mueller, HS on Mar 30 2022, 09:51.

Mar 25 2022

The structural part now also have the solvers of the continuum.
596a07bedb2d
·Philip Mueller on Mar 25 2022, 16:33.
Fixed a bug in the lumped mass implementation of the structural part.
72e56f3888d3
·Philip Mueller on Mar 25 2022, 16:30.

Mar 24 2022

Fixed a typo.
4a883eb2a210
·phimuell on Mar 24 2022, 07:31.
Removed a misleading comment.
0c52d49647c8
·phimuell on Mar 24 2022, 07:23.

Mar 23 2022

Fixed a bug in the `assembleResidual()` function of the structural mechanics…
1531328d5dcb
·Philip Mueller on Mar 23 2022, 09:06.

Mar 22 2022

Updates the `assembleResidual()` functions of the `StructuralMechanicsModel`.
29b90b0f220d
·Philip Mueller, HS on Mar 22 2022, 13:52.
Updated the behaviour of the `getPotentialEnergy()` and `getKineticEnergy()`…
7be0c4621be1
·Philip Mueller, HS on Mar 22 2022, 13:48.

Mar 20 2022

Added a test for the new event.
7a3e0505d63f
·Philip Mueller, HS on Mar 20 2022, 16:49.
Updated the `DOFManager`, regarding the new event `MeshIsDistributedEvent`.
f01a71ed88a5
·Philip Mueller, HS on Mar 20 2022, 16:48.
Added a new mesh event for the case when the `Mesh` is set to be distributed.
aaed29043102
·Philip Mueller, HS on Mar 20 2022, 16:48.

Mar 18 2022

Making IntegratorScheme available in python
7c8e3eb1d349
·richart on Mar 18 2022, 16:04.
Missing matrix type
809d12911433
·richart on Mar 18 2022, 10:58.
Create the M and K matrices if the assembly function is called directly by the…
b592be01af06
·richart on Mar 18 2022, 10:55.

Mar 15 2022

Added a check to the `initFullImpl()` function of the `Model` to check the…
0dbef4831570
·Philip Mueller, HS on Mar 15 2022, 07:46.
Updated the Python interface of the `Mesh`.
1777d544246a
·Philip Mueller, HS on Mar 15 2022, 07:45.
Updated the `SolverVector` Interface.
a1120eb7be62
·Philip Mueller, HS on Mar 15 2022, 07:43.

Mar 14 2022

Removing debug code
3fbdb1c1064d
·richart on Mar 14 2022, 11:26.

Mar 9 2022

`constepr pi` does not compile on clang
b8bf04d15d77
·richart on Mar 9 2022, 15:40.
Missing override
28e453375af1
·richart on Mar 9 2022, 13:37.

Mar 8 2022

Aligning the code with akantu coding conventions
547c4e3b1cbd
·richart on Mar 8 2022, 22:35.

Feb 25 2022

Compiler are sop picky.
d6cbb7a4852c
·Philip Mueller on Feb 25 2022, 16:21.
Fixed an error in the `isFinite()` implementation of `SolverVector`.
20ecde97aa7a
·Philip Mueller on Feb 25 2022, 13:45.
Updated the Akantu Array.
cbfa2ee4faba
·Philip Mueller on Feb 25 2022, 13:27.
Updated the computation of the Bernulli beams.
030b587794b7
·Philip Mueller on Feb 25 2022, 12:58.
Updated the `SolverVector` class of the Python interface.
237ed1deceae
·Philip Mueller on Feb 25 2022, 12:58.
The `SparseMatrix` class now supports a function for testing if its entries are…
962960572b97
·Philip Mueller on Feb 25 2022, 12:26.
Updated the Python interface of the DOFManager.
22fdfd97576d
·Philip Mueller, HS / Philip Mueller on Feb 25 2022, 12:25.
It is now possible to force the creation of the lumped mass.
dca49f1688f5
·Philip Mueller, HS / Philip Mueller on Feb 25 2022, 12:23.

Historyfeatures/changes-to…d846de9e46df43ed106f91a…

Oct 14 2022

Oct 6 2022

Sep 30 2022

Jul 21 2022

Jul 20 2022

Jul 19 2022

Jul 12 2022

Jul 8 2022

Jun 30 2022

Jun 29 2022

Jun 10 2022

May 13 2022

May 10 2022

May 4 2022

May 3 2022

Apr 28 2022

Apr 27 2022

Apr 26 2022

Apr 8 2022

Mar 31 2022

Mar 30 2022

Mar 25 2022

Mar 24 2022

Mar 23 2022

Mar 22 2022

Mar 20 2022

Mar 18 2022

Mar 15 2022

Mar 14 2022

Mar 9 2022

Mar 8 2022

Feb 25 2022

History
features/changes-to…d846de9e46df43ed106f91a…