Diffusion akantu (features/changes-to-address-joss-review) History

changes-to…59ebe4582f96ef7f6f60baf…

May 5 2023

Merge branch 'bugfixes/all_bugs_found_by_working_on_tutorials' into 'master'
882b8698ac6c
·anciaux on May 5 2023, 12:15.

May 2 2023

Converter from python gmsh to akantu
0c70fb2d4ef4
·richart on May 2 2023, 11:05.

May 1 2023

Small rework on randomparameters
b87903dbd5da
·richart on May 1 2023, 01:01.

Apr 26 2023

Adding missing initialize in the ElementTypeMapArray python interface
437e57a876ec
·richart on Apr 26 2023, 23:07.
Forcing to use keywords for getNbElement, this is a api breaking change
7d9c5714bb25
·richart on Apr 26 2023, 22:52.
Const correctness messed up in the Array
58cda29883ee
·richart on Apr 26 2023, 22:37.

Apr 17 2023

Adding some functions in the python interface
6cb1e0229070
·branch: features/adding-shape-recomputation-capability-python
·richart on Apr 17 2023, 15:03.

Apr 4 2023

Correcting bad_cast
275453e1154b
·gallyamov on Apr 4 2023, 11:51.
Bug fix with the bad_cast
3b4f27fa5ded
·richart / gallyamov on Apr 4 2023, 10:05.
Modifications to py_material for custom materials
6e590d38f9c1
·gallyamov on Apr 4 2023, 10:05.

Mar 31 2023

Releasing version 5.0.0
782eefab8ea8
·richart on Mar 31 2023, 11:26.

Mar 15 2023

solve conflicts with master
5bb957e9b427
·saduruss on Mar 15 2023, 17:13.

Mar 1 2023

Cleaning the cmake to remove blas/lapack etc
f700d699eaa8
·Nicolas Richart on Mar 1 2023, 13:48.
Merge remote-tracking branch 'origin/master' into features/eigen
13e8c2729164
·Nicolas Richart on Mar 1 2023, 09:42.

Feb 25 2023

Merge branch 'bugfixes/access_PBC_slaves_python' into 'master'
d6d3330741bf
·richart on Feb 25 2023, 09:52.

Feb 9 2023

formatting
23cdc15365b4
·saduruss on Feb 9 2023, 10:14.

Feb 6 2023

Merge branch 'master' into features/38-damage-energy-computation-missing-in…
08844ab5a290
·saduruss on Feb 6 2023, 11:42.

Feb 3 2023

fix in phase-field model for nonlinear solver
30c579cdf033
·saduruss on Feb 3 2023, 16:38.
clean and fix in phase field material
4d3a517e245d
·saduruss on Feb 3 2023, 16:31.

Dec 23 2022

Merge branch 'master' into features/eigen
801237941204
·Nicolas Richart on Dec 23 2022, 11:27.

Nov 22 2022

Sanitizing the code
5bb67d7f3c81
·richart on Nov 22 2022, 10:33.

Nov 11 2022

Merge branch 'master' into bugfixes/access_PBC_slaves_python
3b7d23e08456
·branch: bugfixes/access_PBC_slaves_python
·tdroch on Nov 11 2022, 15:36.
Return list of slaves
e2c4998ec70d
·tdroch on Nov 11 2022, 14:40.

Oct 14 2022

Adding possibility to write a cohesive material in python
24b44a6c9180
·richart on Oct 14 2022, 11:08.

Oct 12 2022

bug fix in parser and material viscoelastic maxwell
c623efe070c6
·richart on Oct 12 2022, 13:35.

Oct 6 2022

Merge branch 'master' into features/38-damage-energy-computation-missing-in…
fbdc646afed3
·anciaux on Oct 6 2022, 16:53.
Missing part in the mesh interface
327856a9918d
·richart on Oct 6 2022, 15:29.

Oct 5 2022

Cleaning a bit the code
2acd6efbe56c
·richart on Oct 5 2022, 21:04.
Merge branch 'master' into features/eigen
395abbd6ce0f
·richart on Oct 5 2022, 10:32.

Sep 30 2022

Extending cohesive inserter interface
173d75062333
·richart on Sep 30 2022, 16:36.

Sep 29 2022

Refactor contact code (still need some work)
b49c989ba5c3
·richart on Sep 29 2022, 17:55.

Jul 12 2022

Correct compilation on ubuntu:lts and with clang
6748b0c03915
·richart on Jul 12 2022, 22:12.

Jul 9 2022

Merge branch 'master' into features/eigen
b4c0dfe20c45
·richart on Jul 9 2022, 20:56.

Jul 8 2022

Modifies the return value of add on NodeGroup to solve #42
1b8ce86036c4
·richart on Jul 8 2022, 15:47.

Jun 29 2022

Python module does not compile with python 3.11
34f9b667ee80
·richart on Jun 29 2022, 22:33.

May 13 2022

Debugging the version detection in the CI
a309dba7d066
·richart on May 13 2022, 09:08.

May 10 2022

Merge branch 'bugfixes/create_matrices_if_needed_by_user' into 'master'
9d1341e08698
·tdroch on May 10 2022, 11:05.

May 9 2022

parallelization finished
85243d0a8fb8
·tomohitpundir on May 9 2022, 13:43.

May 4 2022

Merge branch 'bugfixes/multiple_small_bug_in_contact_mechanics' into 'master'
d849be145a03
·Lucas Frérot on May 4 2022, 16:54.
keeping old version but marking it deprecated
b8b5f49bb76d
·branch: bugfixes/multiple_small_bug_in_contact_mechanics
·richart on May 4 2022, 14:50.

May 3 2022

Merge branch 'master' into features/38-damage-energy-computation-missing-in…
d22a093f7d6f
·tomohitpundir on May 3 2022, 21:41.
extanding python group interface
e7ba0c1c0ee7
·richart on May 3 2022, 09:16.
Setting properly the model type in contact coupler
d95695ca47b4
·richart on May 3 2022, 09:15.
Creating submodule for debug and cleaning debug code
af35006dbf96
·richart on May 3 2022, 09:13.

Apr 28 2022

Running clang-format for code quality checks
4964c71bb961
·branch: features/structural_mechanics_lumped_mass
·richart on Apr 28 2022, 20:30.
Merge branch 'master' into 'features/structural_mechanics_lumped_mass'
7ffe79ae43a2
·richart on Apr 28 2022, 12:16.
Merge branch 'bugfixes/detect_mixed_distributed_initialization' into 'master'
8185a160038c
·richart on Apr 28 2022, 09:55.

Apr 27 2022

Giving access to alpha and beta in NewmarkBeta
f6df60ddf7b7
·richart on Apr 27 2022, 17:34.
Merge remote-tracking branch 'akantuGL/bugfixes/39-the-python-example-for…
465a82aa17b6
·Philip Mueller, HS on Apr 27 2022, 10:49.

Apr 26 2022

Adding the default argument to `setIntegrationScheme`
489f68024a53
·branch: bugfixes/39-the-python-example-for-phasefield-are-broken-due-to-a-change-to-setintegrationscheme
·richart on Apr 26 2022, 22:01.

Apr 8 2022

Merge branch 'master' into features/38-damage-energy-computation-missing-in…
2474784a69e5
·tomohitpundir on Apr 8 2022, 11:15.

Apr 6 2022

dissipated energy computation added
5a614112b0c1
·tomohitpundir on Apr 6 2022, 20:31.

Mar 31 2022

Made some small adjuatments in the Python interface.
b619a7464358
·Philip Mueller, HS on Mar 31 2022, 07:59.

Mar 30 2022

Merge branch 'bugfixes/65-Making-the-integrators-available-in-Python' into…
b6dbd90d648e
·Philip Mueller, HS on Mar 30 2022, 12:53.
Fixed some compilation errors in the `python/py_integration_scheme.cc` file.
522a8942da5d
·branch: bugfixes/65-Making-the-integrators-available-in-Python
·Philip Mueller, HS on Mar 30 2022, 12:47.
Fixed the CMake of the Python interface.
6864c9ffb9ca
·Philip Mueller, HS on Mar 30 2022, 10:56.

Mar 18 2022

Making IntegratorScheme available in python
7c8e3eb1d349
·richart on Mar 18 2022, 16:04.

Mar 15 2022

Updated the Python interface of the `Mesh`.
1777d544246a
·Philip Mueller, HS on Mar 15 2022, 07:45.
Updated the `SolverVector` Interface.
a1120eb7be62
·Philip Mueller, HS on Mar 15 2022, 07:43.

Mar 14 2022

Removing debug code
3fbdb1c1064d
·richart on Mar 14 2022, 11:26.

Mar 8 2022

Aligning the code with akantu coding conventions
547c4e3b1cbd
·richart on Mar 8 2022, 22:35.

Feb 25 2022

Updated the `SolverVector` class of the Python interface.
237ed1deceae
·Philip Mueller on Feb 25 2022, 12:58.
The `SparseMatrix` class now supports a function for testing if its entries are…
962960572b97
·Philip Mueller on Feb 25 2022, 12:26.
Updated the Python interface of the DOFManager.
22fdfd97576d
·Philip Mueller, HS / Philip Mueller on Feb 25 2022, 12:25.
It is now possible to force the creation of the lumped mass.
dca49f1688f5
·Philip Mueller, HS / Philip Mueller on Feb 25 2022, 12:23.
Implemented a shady way of computing the lumped mass matrix.
e18e82be6b0e
·Philip Mueller, HS / Philip Mueller on Feb 25 2022, 12:22.
Updaed the structural mechanics model.
fa030cf05453
·Philip Mueller, HS / Philip Mueller on Feb 25 2022, 12:17.

Feb 18 2022

Merge branch 'features/missing-python-interface-for-mesh-data' into 'master'
f2068e9a8030
·tag: v4.0.1-pre2
·tag: v4.0.1
·richart on Feb 18 2022, 12:26.

Feb 16 2022

make it compile with clang
52958650f155
·richart on Feb 16 2022, 22:14.
It should compile in CI with some warning remaining
a71667e20cbd
·richart on Feb 16 2022, 16:24.
Compiles with older compilers and reactivated missing compilation flags
2a295ea8f9f4
·richart on Feb 16 2022, 01:24.

Feb 10 2022

Implemented inflate which does the opposite of flatten
677ca31609cb
·richart on Feb 10 2022, 09:52.
py::kw_only is pybind11 2.9
9661224b8806
·richart on Feb 10 2022, 09:52.
adding missing functions to the python interface
8a1376f66a9f
·richart on Feb 10 2022, 09:52.
Updated the Python interface of the solid mechanic model.
cdbd97116d13
·Philip Mueller, HS / richart on Feb 10 2022, 09:52.
Updated the Python interface of the material.
a9e5d4c6350f
·Philip Mueller, HS / richart on Feb 10 2022, 09:52.
Updated the Python interface of the parser.
0f10ebd6aa4f
·Philip Mueller, HS / richart on Feb 10 2022, 09:52.
Updated the Python interface of the ElementTypeMap
c6b4c9d7204a
·Philip Mueller, HS / richart on Feb 10 2022, 09:52.
Merge branch 'bugfixes/python_interface_energy_computations' into 'master'
26cd3a43fc8e
·richart on Feb 10 2022, 09:38.

Jan 26 2022

[wip] bug fix and changing UInt to Idx and Int
cb6de5f8a3bc
·Nicolas Richart on Jan 26 2022, 18:03.

Jan 22 2022

Merge branch 'master' into features/eigen
36b5c7690fc7
·Nicolas Richart on Jan 22 2022, 21:28.

Jan 21 2022

[wip] reached a compiling state for the library
9522a0eddb68
·Nicolas Richart on Jan 21 2022, 23:32.

Jan 20 2022

Adding PeriodicSlaves and removing method that returns a unordered_multimap
06016ce80fae
·Nicolas Richart on Jan 20 2022, 16:44.
Merge branch 'master' into features/mesh-periodic-info-in-python
4e311a5e5310
·Nicolas Richart on Jan 20 2022, 14:14.

Jan 19 2022

Adding the version of getPotentialEnergy by element_type
3c331277e5d9
·Nicolas Richart on Jan 19 2022, 09:47.
Added a missing function to the Python interface of the material.
46b653b86fe8
·Philip Mueller, HS / Nicolas Richart on Jan 19 2022, 09:25.
This commit fixes a problem in the Python interface of the material regarding…
d829bf5a7799
·Philip Mueller, HS / Nicolas Richart on Jan 19 2022, 09:25.

Dec 23 2021

This makes the CI build the python wheel - on master it pushes the wheel to the…
4d4db01864a7
·richart on Dec 23 2021, 11:40.

Nov 26 2021

Bug fix
7ff89e9b9c50
·richart on Nov 26 2021, 14:11.

Nov 23 2021

Adding missing interface for periodic information
16af306e34b6
·richart on Nov 23 2021, 14:09.

Nov 10 2021

Bug fix in the interface
6503defbf56c
·branch: features/terms-to-add-in-python
·Nicolas Richart on Nov 10 2021, 18:29.

Nov 9 2021

Remove pure virtual where not needed
90b20d4c42ee
·Nicolas Richart on Nov 9 2021, 19:21.

Nov 5 2021

Adding a layer InterceptSolverCallback to simplify the interception
174a2e1ab3ac
·richart on Nov 5 2021, 15:04.
Moved dofs ids information to TermsToAssemble
3ad087540b2b
·richart on Nov 5 2021, 11:23.

Oct 31 2021

[wip] slowly correcting the merge and rebase errors
8e76908f420b
·Nicolas Richart on Oct 31 2021, 21:06.

Oct 29 2021

Merge remote-tracking branch 'origin/master' into features/eigen
01141098e462
·Nicolas Richart on Oct 29 2021, 18:58.
[wip] changing back `const (ElementType|ElementKind|GhostType) &` to \1 after…
dd07c2a05544
·Nicolas Richart on Oct 29 2021, 18:05.
[wip] More UInt to auto, Int or Idx and Eigen stuffs
47efb065a843
·richart / Nicolas Richart on Oct 29 2021, 16:27.

Oct 26 2021

[WIP] UInt to Int and auto everything
6433ed40e8e0
·richart / Nicolas Richart on Oct 26 2021, 15:38.

Oct 22 2021

Adding missing parts in the interface and debugging
44aa27ae672e
·Nicolas Richart on Oct 22 2021, 09:08.

rAKA/pythonfeatures/changes-to…59ebe4582f96ef7f6f60baf…

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rAKA/python
features/changes-to…59ebe4582f96ef7f6f60baf…