Diffusion akantu (features/changes-to-address-joss-review) History

changes-to…63db325b3a31bb63790b56b…

May 14 2021

Merge branch 'master' into features/phasefield
48566fff3ed0
·branch: features/phasefield
·richart on May 14 2021, 11:23.
Correcting compilation errors on newer version of pybind11
5c0a955c98b9
·richart on May 14 2021, 10:13.

May 7 2021

Modified the import of py11_akantu
f66bea2afab4
·branch: features/versioneer
·richart on May 7 2021, 18:09.
Relocated py11_akantu module as a submodule of akantu
2214b92238c9
·richart on May 7 2021, 13:45.
adding versioneer to generate a version number in the python interface
ccc0cad429ca
·richart on May 7 2021, 08:57.

Apr 2 2021

removed the memory part from the phasefield model
2f318e8d0e9b
·pundir on Apr 2 2021, 08:56.
Merge branch 'master' into features/phasefield
5acfa6ca970d
·pundir on Apr 2 2021, 01:37.

Mar 30 2021

add the possibility to return a vector of possible material allocators
7f9fe3088b81
·anciaux on Mar 30 2021, 10:32.

Mar 29 2021

give better default to the fragmentation_manager tools
2c2ac9d01138
·anciaux on Mar 29 2021, 12:24.
adding the fragment manager to python interface
c7e03d7ebae5
·anciaux on Mar 29 2021, 10:23.

Mar 15 2021

missing include in py_mesh
bc514ea38833
·richart on Mar 15 2021, 21:00.

Mar 13 2021

Fixing dumper warnings
d7eb0b0c18be
·richart on Mar 13 2021, 23:38.
Adapting due to changes in structural mechanics
95d0dced15d1
·richart on Mar 13 2021, 19:14.
Merge branch 'master' into features/material_internals_memory
9cb01e0c3a12
·richart on Mar 13 2021, 15:31.
Merge branch 'master' into features/material_internals_memory
12c0a090caee
·richart on Mar 13 2021, 14:42.
Merge branch 'master' into bugfixes/dynamics_structural_mechnanics
db203e90b229
·branch: bugfixes/dynamics_structural_mechnanics
·richart on Mar 13 2021, 13:23.

Mar 12 2021

Copy paste error in the target name
7b357e2dce56
·richart on Mar 12 2021, 23:35.
Trying to remove warnings from pybind11 includes
d5fb526af36e
·richart on Mar 12 2021, 23:35.
Merge branch 'master' into bugfixes/dynamics_structural_mechnanics
3d1bde8e1dbb
·richart on Mar 12 2021, 23:01.

Mar 10 2021

Adding energy computation per element group
6f03fe32926e
·richart on Mar 10 2021, 09:10.
Getting rid of the static memory
33327d9f46e4
·richart on Mar 10 2021, 00:01.

Mar 9 2021

fixed python interface for custom material and internals management
a72501b17df2
·anciaux on Mar 9 2021, 16:28.

Mar 8 2021

Updated the Python interface of the `DOFManager` .
bff781638aca
·Philip Mueller, HS on Mar 8 2021, 15:08.
Updated the text description of the `getMaterial()` functions of the structural…
1b9d3b1e2f9f
·Philip Mueller, HS on Mar 8 2021, 15:08.

Mar 6 2021

Adding energy computations
8b2393966ca6
·richart on Mar 6 2021, 19:30.
Adding capability to add matrix to matrix
b9626220d63d
·richart on Mar 6 2021, 19:28.

Mar 4 2021

Adding capability to register materials by name
23a4eb17ac12
·richart on Mar 4 2021, 13:50.

Mar 3 2021

Merge branch 'bugfixes/dynamics_structural_mechnanics' of gitlab.com…
f27e60b770cd
·richart on Mar 3 2021, 15:49.
Updated the Interface of the mesh to allow the creation of the `extra_normal`…
b4da2bec742f
·Philip Mueller, HS on Mar 3 2021, 10:03.

Mar 2 2021

added python interface for defining new user-defined solvers
e64b992bfcc9
·pundir on Mar 2 2021, 01:05.

Mar 1 2021

functionality to defined solver type for solid model during coupling
368683505b73
·pundir on Mar 1 2021, 17:43.

Feb 28 2021

python interface for phasefield coupler added
fa42b762652f
·pundir on Feb 28 2021, 15:34.

Feb 26 2021

Merge remote-tracking branch 'upstream/master' into features/phasefield
a4e2455c217e
·pundir on Feb 26 2021, 16:02.
python module for phasefield added
e53c696aaab0
·pundir on Feb 26 2021, 15:32.

Feb 24 2021

Adding solvers to the python interface
b37d88658024
·richart on Feb 24 2021, 12:59.

Feb 20 2021

Created a constructor for the Python version of the `StructuralMaterial`.
90b085f6bff5
·Philip Mueller on Feb 20 2021, 13:48.

Feb 19 2021

Corrected the Python interface of the structural mechanic wrapper.
a1a3d3e1f37c
·Philip Mueller on Feb 19 2021, 13:04.
Added the `addConnectivityType()` function to the Python mesh interface.
d128c8f2a50c
·Philip Mueller on Feb 19 2021, 13:03.
This commit fixes several bugs in the the implementation of the Python…
729a820968e3
·Philip Mueller on Feb 19 2021, 13:03.

Feb 9 2021

Adding MeshAccessor to python and adding posibility to resize meshes
8178b1e40e10
·richart on Feb 9 2021, 00:41.

Feb 8 2021

Bug fix in the python interface of structural model
98e6ec45ecd9
·richart on Feb 8 2021, 21:18.
Linting the python interface
c899d41bc065
·richart on Feb 8 2021, 20:58.

Feb 5 2021

This commit fixes an error in the Python interface of the model.
88d3df4f3c5e
·Philip Mueller on Feb 5 2021, 09:04.
This commit fixes an error, at least I think that, in the Python interface of…
4ba9503a3f37
·Philip Mueller on Feb 5 2021, 07:14.
Included the python wrapper of the structural mechanics part into CMake.
e2b06dcbe600
·Philip Mueller on Feb 5 2021, 07:14.
Finalized the work on the Python interface for the structural mechanics part.
b21bd8ea6faa
·Philip Mueller on Feb 5 2021, 07:14.
Started with the extension of the Python interface such that it also includes…
d3b901dacdcc
·Philip Mueller, HS / Philip Mueller on Feb 5 2021, 07:14.

Jan 18 2021

Merge branch 'master' of gitlab.com:akantu/akantu
b56858367c28
·anciaux on Jan 18 2021, 18:09.
making link with library ok
0870565fddd9
·anciaux on Jan 18 2021, 18:05.
adding setup.py.in
264488a89fd1
·anciaux on Jan 18 2021, 16:48.

Nov 17 2020

Removing warning in py_material RTFM...
e13ac132d985
·richart on Nov 17 2020, 14:35.
removing warnings in py_material
8f1d14ec176b
·richart on Nov 17 2020, 12:57.

Nov 13 2020

Bug fix: rebase conflit resolution
64fb0b466ebe
·richart on Nov 13 2020, 19:45.
Missing marco definition for pybind11
b3bb1a6f112e
·richart on Nov 13 2020, 18:26.
Warning in pybind11
327367782b0e
·richart on Nov 13 2020, 18:26.
Correcting deprecated pybind code
3ae228d1e7a7
·richart on Nov 13 2020, 18:26.
clang-tidy
2494dc4e9df3
·richart on Nov 13 2020, 18:25.
Modified visibility and headers in pybind interface
ce37131bcd4f
·richart on Nov 13 2020, 18:25.
Change in pybind11 compilation
d0b63cea21e3
·richart on Nov 13 2020, 12:03.
Bug fixes and compilation warning cleaning:
1f6666b97403
·richart on Nov 13 2020, 12:03.

Jul 21 2020

Bug fix
5cae7298abb3
·richart on Jul 21 2020, 10:39.
Extanding the python interface of FEEngine and cohesive element
f7d749d67510
·richart on Jul 21 2020, 09:29.

Jun 19 2020

Conflict with master resolved
c921ebe198ff
·pundir on Jun 19 2020, 21:34.

May 6 2020

Merge branch 'master' of gitlab.com:akantu/akantu
95f643fbb529
·richart on May 6 2020, 20:20.
Modifications for the documentation
f2b54f6e0331
·richart on May 6 2020, 20:17.

Mar 25 2020

extend python interface for dofmanager
c5c7617d4862
·anciaux on Mar 25 2020, 16:28.

Feb 21 2020

conflict with master resolved
f8216b08dab8
·pundir on Feb 21 2020, 13:25.

Jan 24 2020

Bug fix in pythonpath
e55ad43b118d
·richart on Jan 24 2020, 16:39.

Jan 23 2020

Installing python binding and akantu-iterators properly
8b12a8c50daf
·richart on Jan 23 2020, 18:07.

Dec 13 2019

extanding SparseMatrix and DOFManager interface in python
0ff570ffbf37
·richart on Dec 13 2019, 15:33.

Dec 4 2019

Missing include in pybind11
ee95d25f3f67
·richart on Dec 4 2019, 21:56.
handling properly the default arguments in py_fe_engine
db48d22d8064
·richart on Dec 4 2019, 17:35.
missing headers in py_fe_engine
fb6207862153
·richart on Dec 4 2019, 16:58.
adding method in model python interface
356f1dac21fd
·richart on Dec 4 2019, 15:43.

Nov 27 2019

Extending feengine generic api
a7b944d6c817
·richart on Nov 27 2019, 18:54.
Updating cmake
3b5ad8bc6ce8
·richart on Nov 27 2019, 15:38.

Nov 11 2019

Cleaning debug couts
136fdff461b8
·richart on Nov 11 2019, 16:28.

Nov 7 2019

adding the meshdatamaterialselector handling
1679e030bb0f
·anciaux on Nov 7 2019, 22:17.
Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private
c4af0da6117d
·anciaux on Nov 7 2019, 22:16.

Nov 6 2019

Correcting bug introduced in rAKAPRIVe3715c23639b
1d436d1e0a06
·richart on Nov 6 2019, 16:57.
adding a feature for node groups
18549d2da848
·anciaux on Nov 6 2019, 15:45.
add library dependence for aka pybind
f4a623ac3799
·anciaux on Nov 6 2019, 14:56.
adding possibilities for the element/node groups
33b2a21d75fa
·anciaux on Nov 6 2019, 14:40.

Oct 30 2019

Bug fix for cmake > 3.11
e3715c23639b
·richart on Oct 30 2019, 16:15.

Oct 28 2019

Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
7f3d662810a7
·richart on Oct 28 2019, 21:26.
Make akantu compile again on ubuntu xenial
67bc28894cfb
·richart on Oct 28 2019, 21:24.

Oct 10 2019

fix bug on the group manager python interface
98e31aa37f35
·anciaux on Oct 10 2019, 16:27.

Oct 5 2019

conflicts with master resolved
8ab1824459dc
·pundir on Oct 5 2019, 23:06.

Sep 27 2019

dirty hack to allow to dump a numpy array
a7432c4bab43
·anciaux on Sep 27 2019, 21:49.
saving the test for large rotations
442a2f57fe23
·anciaux on Sep 27 2019, 21:46.
temporary fix to pass a numpy to be dumped
baac59a38a62
·anciaux on Sep 27 2019, 21:45.
adding a adddumpfieldexternal
aaddfc6e06ae
·anciaux on Sep 27 2019, 14:57.

Sep 17 2019

bug in the interface
c59021d18d8e
·richart on Sep 17 2019, 17:03.

Aug 14 2019

Modified pybind11 to work also with 2.3
8fb402aea0a1
·richart on Aug 14 2019, 15:33.

Jul 19 2019

backward compatibility for pybind11 interface
66e096390ab1
·richart on Jul 19 2019, 18:03.
Correcting some examples
b2a2f97d97ac
·richart on Jul 19 2019, 18:03.
arc lint --everything
fe2c711063a8
·richart on Jul 19 2019, 16:32.

Jul 16 2019

bug fix in the model interface pybind11
d4c15ff0af18
·richart on Jul 16 2019, 11:33.

Jul 4 2019

Allowing to call the solver with a different solver callback
64b062ea67f5
·richart on Jul 4 2019, 14:50.

Jun 24 2019

changes to coupler interface of phasefield model
dc45d7139e94
·pundir on Jun 24 2019, 23:58.

rAKA/pythonfeatures/changes-to…63db325b3a31bb63790b56b…

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rAKA/python
features/changes-to…63db325b3a31bb63790b56b…