introduced default celsius (36°C) as a PointNeuron property shared by all…

added celsius parameter (36.0) to cortical and thalamic neurons.

corrected gaussian formula so that sigma matches definition of standard…

removed SilentMRGNode class (now generated on-the-fly in analysis notebook)

implemented passiveNeuron wrapper function to generate PassiveNeuron class…

added pneuron.tau_pas property

added LogBatch getSerlializedOutput and getEntryOutput methods.

added log scale option for tau axis in plotGatingStates

added pairwise utils function. added GroupedTimeSeries.shareX static method.

corrected Lookup and TimeSeries division operators.

updated MANIFEST file.

updated README.

corrected index offset error in GenericPlot.addCmap

added strictbounds plotting options

added extractCommonPrefix utils function.

corrected DrivenNeuronalBilayerSonophore.inputs

corrected error in solve_ivp call.

added actmap NaN data post-processing to prevent numpy warning when using log z…

new astim titrations for figure 8

Merge branch 'master' of https://c4science.ch/diffusion/4670/pysonic

added new titrations

corrected ComparativePlot and CompTimeSeries to enable taking generators as…

new figure 7 titrations for high PRF low DC

applied correction to ODESolver.getNsamples to make sure there are at least 2…

new figure 7 titrations

added new astim titrations

added progress bar logging to nbls.simFull at INFO level.

corrected scaling factor in actmap.addThresholdCurve

defined Thresholder class for a clearer threshold search implementation.

added RS 10Hz titrations.

corrected queue error in actmap.addTresholdCurve

corrected DC scaling in actmap.addThresholdCurve

added mpi feature to actmap threshold curve.

changed bls.inputs['a'] (factor 0, unit m).

added input-ouput match pre-check in LogBatch.run method to avoid unnecessary…

modified BurstProtocol default BRF such that BRI is twice burst time.

corrected simobj.check methods (incorrect paramStr call). added BRF pre-check…

added baseline_modulation example script

added optional tstart argument to PusledProtocol classes. corrected…

added TCtweak70 and TCtweak50 cases.

added TC2 class

introduced lambda function for test.execute calls

additional bls lookups

defined friendlyLogspace function

placed StimObject class in a separate stimobj module. added boltons dependency…

added TC lookup 80 nm 590 kHz

added few utils functions

added BalancedPulsedProtocol class.

added 48 nm TC lookups

added max_nsamples parameter to effective solver to avoid memory allocation…

added more TC lookups.

corrected units discrepancy in actmap.py

corrected TimSeries.getStimPulses function (no patches for zero states).

updated README

defined protocols copy methods.

corrected drives and protocols inputs.

simplified drives and protocols

updated inputs precision in protocols

updated README

cleand-up run_astim.py

added 64nm 590 kHz fs-dependent TC lookup

harmonized repr, desc and filecodes methods across protocols.

implemented simQueueBurst method in pneuron and nbls classes.

added update interval argument to HybridSolve.solve method.

cleaned-up find_tpeaks function

corrected error in computeFRProfile when no spikes are detected.

improved solvers docstrings and clarified their use in model classes.

added 2 MHz 32nm TC lookup.

implemented better solvers (now inside solvers module), including an…

removed ambiguity around initialConditions methods to allow correct lookups…

added TC fs lookup at 1 MHz.

replaced "Ascale" parsing options by "yscale" for more clarity.

corrected LogBatch class to enable correct use with mpi.

added better fs handling in actmap

removed useless error instance catch in utils

added example actmap script

changed default actmap tstim from 1s to 200 ms

added multiprocessing functionality to LogBatch class.

corrected ActMap class (now inheriting from LogBatch).

added TimeProtocol.stimEvents method (used in NEURON simulations).

added eventsON and eventsOFF methods to Protocol classes.

moved example scripts to examples folder and defined README.mdpp markdown…

added __eq__ methods to pneuron and nbls classes

added ASTIM_REL_CONV_THR to constants file.

added TC fs lookup.

added MRG fs lookup.

added MRG lookup.

renamed fibers point-neuron models for better interpretability. completed fiber…

tested MRG lookups generation

corrected typo in SweeneyNode description.

added addExcitationInset to pltutils

added getLogStartPoint to utils

added polyfit amd extrapolate capabilities to Lookup class.

added x axis sharing in GroupedTimeSeries

added extra functionalities to Lookup class. continued fiber nodes notebook.

Merge branch 'master' of https://c4science.ch/diffusion/4670/pysonic

added fiber ndoes analysis notebook

added better handling of ybounds in timeseries. added MRG neuron class.

moved getMeta to utils

changed meta property of model classes to return solely model information.