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Jun 27 2018
Jun 27 2018
laurenczy committed R2915:47c2b5aeef0c: Added high quality and low size version of guidelines document (authored by laurenczy).
Added high quality and low size version of guidelines document
Added updated guidelines document
Jun 21 2018
Jun 21 2018
laurenczy committed R2915:2027d07a08d5: Updated README to add reference log link and required ressources (authored by laurenczy).
Updated README to add reference log link and required ressources
May 18 2018
May 18 2018
Added container building folder
May 17 2018
May 17 2018
Adjusted run scripts
May 7 2018
May 7 2018
Small fixes in README
Small changes in README
laurenczy committed R2915:9f72c32f6675: Removing MelArray repo from master branch (authored by laurenczy).
Removing MelArray repo from master branch
Adding link to public GIST
Adding MelArray to public branch
Updated README
Adding MelArray repository
Oct 13 2017
Oct 13 2017
Updates after testing
Added different configurations
laurenczy committed R2915:467127cb1972: Changing build and run scripts to separate steps (authored by laurenczy).
Changing build and run scripts to separate steps
Added python + cuda config
Added python + cuda config
Updates for testing
Updates for testing
Updating runner config file
laurenczy committed R2915:688462c08f42: Updated building and running scripts (authored by laurenczy).
Updated building and running scripts
Oct 12 2017
Oct 12 2017
laurenczy committed R2915:a00fd86c981d: Updated Dockerfiles for cudnn library (authored by laurenczy).
Updated Dockerfiles for cudnn library
laurenczy committed R2915:11692fe2863b: Updated Singularity images runner script to test for tensorflow (authored by laurenczy).
Updated Singularity images runner script to test for tensorflow
laurenczy committed R2915:bea67b54dc79: Updated LD_LIBRARY_PATH definitions (authored by laurenczy).
Updated LD_LIBRARY_PATH definitions
Updated running script
laurenczy committed R2915:67fe47664b4c: Added test script and running script (authored by laurenczy).
Added test script and running script
Updating pulling script
Added GPU Dockerfiles
Oct 2 2017
Oct 2 2017
Added guidelines PDF
Aug 25 2017
Aug 25 2017
Changing the container creation
Aug 23 2017
Aug 23 2017
laurenczy committed R2915:13fc090e376c: Adding MPI over ethernet submission scripts (authored by laurenczy).
Adding MPI over ethernet submission scripts
laurenczy committed R2915:619ccbcf7002: Adding MPI over ethernet submission scripts (authored by laurenczy).
Adding MPI over ethernet submission scripts
laurenczy committed R2915:055030e15783: Merge branch 'master' of ssh://c4science.ch/diffusion/2915/esct-pipeline… (authored by laurenczy).
Merge branch 'master' of ssh://c4science.ch/diffusion/2915/esct-pipeline…
Removing temporary notes file
Added LSF sumbission logs
Removing bad logs
Added tilling submission scripts
Aug 22 2017
Aug 22 2017
laurenczy committed R2915:f5be7e83ff6e: Fixing CUDA parameter in submission scripts (authored by laurenczy).
Fixing CUDA parameter in submission scripts
Updating launching script
Updating launching script
Added LSF job launching script
laurenczy committed R2915:a542b873640b: Added no CUDA versions of LSF scripts (authored by laurenczy).
Added no CUDA versions of LSF scripts
Added .out extension to log files
Added no container script
laurenczy committed R2915:5f87b95ca8ed: Merge branch 'master' of https://c4science.ch/diffusion/2915/esct-pipeline… (authored by laurenczy).
Merge branch 'master' of https://c4science.ch/diffusion/2915/esct-pipeline…
Added Singularity build scritp
Added LSF submission scripts
Fixed version number
Fixed version number
Added pushing script
laurenczy committed R2915:974c8ef4235c: Added docker images building script (authored by laurenczy).
Added docker images building script
laurenczy committed R2915:5ab0f7969cb5: Fixed Dockerfile for LD_LIBRARY_PATH and PATH variables (authored by laurenczy).
Fixed Dockerfile for LD_LIBRARY_PATH and PATH variables
Deleting logs from repo
laurenczy committed R2915:c32b5b9f3aa0: Ordering files, renaming, adding comments (authored by laurenczy).
Ordering files, renaming, adding comments
Aug 14 2017
Aug 14 2017
Added Dockerfile and YAML file
Added MPI folder
Aug 2 2017
Aug 2 2017
Changed BSUB submit parameters
Jul 1 2017
Jul 1 2017
Added LSF submission script
Jun 30 2017
Jun 30 2017
Updated runner README (2)
Updated runner README
Changed README file (2)
Changed README file
laurenczy committed R2915:a0d2698cc758: Added SIB publications example pipeline (authored by laurenczy).
Added SIB publications example pipeline
laurenczy committed R2915:e956cc851379: Created public branch with re-organised files (authored by laurenczy).
Created public branch with re-organised files
Jun 23 2017
Jun 23 2017
Added config file for hello_world
laurenczy committed R2915:f5ec274b5772: Tested runner script, made a python3 version (authored by laurenczy).
Tested runner script, made a python3 version
Jun 22 2017
Jun 22 2017
laurenczy committed R2915:87ebc08e65e2: Added own version of docker2singularity to try to reduce size of converted image (authored by laurenczy).
Added own version of docker2singularity to try to reduce size of converted image
Added tests for hello world light
Jun 14 2017
Jun 14 2017
laurenczy committed R2915:5312e3ee74a5: Changing LSF submission scripts for pipeline1 (more memory) (authored by laurenczy).
Changing LSF submission scripts for pipeline1 (more memory)
laurenczy committed R2915:dc47940dd1f2: Changing LSF submission scripts for pipeline1 (more memory) (authored by laurenczy).
Changing LSF submission scripts for pipeline1 (more memory)
laurenczy committed R2915:05ccf8c0695c: Changing LSF submission scripts for pipeline1 (authored by laurenczy).
Changing LSF submission scripts for pipeline1
Jun 13 2017
Jun 13 2017
Changing LSF submission scripts
Changing LSF submission scripts
laurenczy committed R2915:c7b9f3ad048f: Added bowtie2 installation to pipeline2 Dockerfile (authored by laurenczy).
Added bowtie2 installation to pipeline2 Dockerfile
laurenczy committed R2915:f45978fdd4bb: Testing pipelines with singularity pull (authored by laurenczy).
Testing pipelines with singularity pull
Jun 12 2017
Jun 12 2017
Testing private GitLab (1)
Jun 1 2017
Jun 1 2017
laurenczy committed R2915:bc74245c0363: Added Dockerfile for pipeline2 and some scripts, started pipeline1 snakemake… (authored by laurenczy).
Added Dockerfile for pipeline2 and some scripts, started pipeline1 snakemake…
May 30 2017
May 30 2017
laurenczy committed R2915:21ff5170b17d: Updated the hello world pipeline. Provided download link for the Singularity… (authored by laurenczy).
Updated the hello world pipeline. Provided download link for the Singularity…
BugFix for pipeline1
Changing parameters for pipeline1
Changing parameters for pipeline1
Changing parameters for pipeline1
Changing parameters for pipeline1
May 29 2017
May 29 2017
laurenczy committed R2915:5f9551340c48: Adapted submission script to LSF (running on Euler) (authored by laurenczy).
Adapted submission script to LSF (running on Euler)
laurenczy committed R2915:645b3e1d6f40: Adapted submission script to LSF (running on Euler) for pipeline2 (authored by laurenczy).
Adapted submission script to LSF (running on Euler) for pipeline2
Changing folder structure
May 2 2017
May 2 2017
Small fixes
Apr 28 2017
Apr 28 2017
Testing scicore pipeline...
laurenczy committed R2915:65c2a27f3f55: Updating pipelines, work in progress... (authored by laurenczy).
Updating pipelines, work in progress...
laurenczy committed R2915:bb36f5cef5b2: Renaming pipelines, adding tests for sciCORE's pipeline (authored by laurenczy).
Renaming pipelines, adding tests for sciCORE's pipeline
Apr 21 2017
Apr 21 2017
laurenczy committed R2915:42362601403b: Added first version of the basic 'hello world' pipeline (authored by laurenczy).
Added first version of the basic 'hello world' pipeline
Mar 24 2017
Mar 24 2017
Added SIS folder
initial commit
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