Phriction Projects Wikis Bioimaging And Optics Platform Image Processing OMERO OMERO Pilot History Version 19 vs 32
Version 19 vs 32
Version 19 vs 32
Content Changes
Content Changes
= USERs =
Please contact [[claire.stoffel@epfl.ch | Claire Stoffel]] for any question related to OMERO or to the pilot project.
= EPFL OMERO server =
The EPFL OMERO server can be accessed at [[ https://omero.epfl.ch/ | https://omero.epfl.ch/]] with your gaspar credentials.
= Training slides =
The slides from the first training session (OMERO introduction) can be accessed [[https://docs.google.com/presentation/d/11RAzRpONymEYehHdVCedFzRB8qbo3QRRm1gJs-Xg0Z8/ | here]].
The slides from the second training session (FIJI and OMERO) can be accessed [[https://docs.google.com/presentation/d/1FUvzQeMTo99tv6gksRoOtMMO78HQY95x2C3whWqN6qE/ | here]].
= OMERO PDF tutorials =
You can find here useful pdf tutorials from the OME team:
1. [[ https://downloads.openmicroscopy.org/help/pdfs/managing-data.pdf | managing data]]
2. [[ https://downloads.openmicroscopy.org/help/pdfs/figure.pdf | creating figures]]
3. [[ https://downloads.openmicroscopy.org/help/pdfs/web-tagging.pdf | web-tagging]]
4. [[ https://downloads.openmicroscopy.org/help/pdfs/sharing-data.pdf | sharing data]]
5. [[ https://downloads.openmicroscopy.org/help/pdfs/workflows-fiji.pdf | processing with FIJI]]
= Training materials =
===== Demo dataset for the first training session =====
Windows: Go to the path `\\svfas6.epfl.ch\biop\public\0-BIOP_Data\0-Install\OMERO\demo dataset` from your file explorer
Mac: Go to the folder `smb://svfas6.epfl.ch/biop/public\0-BIOP_Data\0-Install\OMERO\demo dataset` from the finder
===== Demo dataset for the second training session =====
Windows: Go to the path `\\svfas6.epfl.ch\biop\public\0-BIOP_Data\0-Install\OMERO\demo dataset 2` from your file explorer
Mac: Go to the folder `smb://svfas6.epfl.ch/biop/public\0-BIOP_Data\0-Install\OMERO\demo dataset 2` from the finder
===== Additional files for the second training session =====
Windows: Go to the path `\\svfas6.epfl.ch\biop\public\0-BIOP_Data\0-Install\OMERO\demo extra files` from your file explorer
Mac: Go to the folder `smb://svfas6.epfl.ch/biop/public\0-BIOP_Data\0-Install\OMERO\demo extra files` from the finder
https://wiki-biop.epfl.ch/en/Image_Storage/OMERO/AdminOmeroGeneral
https://wiki-biop.epfl.ch/en/Image_Storage/OMERO/Managing_Data
https://wiki-biop.epfl.ch/en/Image_Storage/OMERO/Home
= USERs =
Please contact [[claire.stoffel@epfl.ch | Claire Stoffel]] for any question related to OMERO or to the pilot project.
= EPFL OMERO server =
The EPFL OMERO server can be accessed at [[ https://omero.epfl.ch/ | https://omero.epfl.ch/]] with your gaspar credentials.
= Training slides =
The slides from the first training session (OMERO introduction) can be accessed [[https://docs.google.com/presentation/d/11RAzRpONymEYehHdVCedFzRB8qbo3QRRm1gJs-Xg0Z8/ | here]].
The slides from the second training session (FIJI and OMERO) can be accessed [[https://docs.google.com/presentation/d/1FUvzQeMTo99tv6gksRoOtMMO78HQY95x2C3whWqN6qE/ | here]].
= OMERO PDF tutorials =
You can find here useful pdf tutorials from the OME team:
1. [[ https://downloads.openmicroscopy.org/help/pdfs/managing-data.pdf | managing data]]
2. [[ https://downloads.openmicroscopy.org/help/pdfs/figure.pdf | creating figures]]
3. [[ https://downloads.openmicroscopy.org/help/pdfs/web-tagging.pdf | web-tagging]]
4. [[ https://downloads.openmicroscopy.org/help/pdfs/sharing-data.pdf | sharing data]]
5. [[ https://downloads.openmicroscopy.org/help/pdfs/workflows-fiji.pdf | processing with FIJI]]
= Training materials =
===== Demo dataset for the first training session =====
Windows: Go to the path `\\svfas6.epfl.ch\biop\public\0-BIOP_Data\0-Install\OMERO\demo dataset` from your file explorer
Mac: Go to the folder `smb://svfas6.epfl.ch/biop/public\0-BIOP_Data\0-Install\OMERO\demo dataset` from the finder
===== Demo dataset for the second training session =====
Windows: Go to the path `\\svfas6.epfl.ch\biop\public\0-BIOP_Data\0-Install\OMERO\demo dataset 2` from your file explorer
Mac: Go to the folder `smb://svfas6https://wiki-biop.epfl.ch/biop/public\0-BIOP_Data\0-Install\OMERO\demo dataset 2` from the finder
===== Additional files for the second training session =====en/Image_Storage/OMERO/AdminOmeroGeneral
Windows: Go to the path `\\svfas6https://wiki-biop.epfl.ch\biop\public\0-BIOP_Data\0-Install\ch/en/Image_Storage/OMERO\demo extra files` from your file explorer/Managing_Data
Mac: Go to the folder `smb://svfas6https://wiki-biop.epfl.ch/biop/public\0-BIOP_Data\0-Install\ch/en/Image_Storage/OMERO\demo extra files` from the finder
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