Bioimaging And Optics Platform
Bioimaging And Optics Platform
Introduction
The BIOP Wiki aims to bring together all documentation from the BIOP in one easy, central, searchable place.
Structure on C4Science
This structure works through the idea of 'Projects'. We have a few already
Project Name | Contents |
---|---|
#bioimaging_and_optics_platform_biop | The main project for all BIOP things |
All projects below are subprojects | |
#biop_members | Contains the members of the BIOP |
#biop_analysts | Our BioImage Analysts |
#imagej_tools | All our macros, plugins, actionbars for ImageJ |
#imaris_tools | Our Imaris XTensions |
#microscope_tools | Software that was made for the microscopes |
#matlab_tools | Projects that involve predominantly Matlab |
Cell Profiler Tools | Tools, Pipelines and othes Cell Profiler things |
#qupath_tools | Code relevant to QuPath |
#biop_mooc | BIOP MOOC Workboard and Project |
As needed we will include more projects.
The Wiki is located here if you want a direct link: Bioimaging And Optics Platform
Everything in the Wiki is searchable.
- Last Author
- oburri
- Last Edited
- Oct 2 2018, 09:14
Document Hierarchy
Document Hierarchy
- CO2 Confocal Room
- Computers & Servers at the BIOP
- Covid-19
- EPFL Tools
- Image Processing
- [OBSOLETE] Whole Slide Image (WSI) Registration With ImageJ/Fiji, Elastix and QuPath
- Big Image Fusion with BigDataViewer Playground
- BIOP GISTS
- Cell Profiler
- Code Licensing
- Colocalization & Co-localization & Coloc & Co-Localisation & Colocalisation
- Composing an URL to pre-fill an image.sc forum post
- Creating 3D Printing File
- Deconvolution
- FFMPEG
- ilastik
- ImageJ/Fiji
- Learnathon2019
- Lightning
- Machine Learning
- OMERO
- QuPath
- QuPath 0.2.x
- SCITAS Cluster Processing
- Version Control : Git, GitHub Actions CI (continuous integration) and Scijava Maven
- Microscopy
- Teaching
- Workshops