Merge branch 'master' into features/fe2-orthodamage
188f96732338
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Authored by gallyamov on Feb 10 2022, 18:31.

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Merge branch 'master' into features/fe2-orthodamage

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Committed

gallyamov

Feb 10 2022, 18:31

Pushed

gitlab-richart

Feb 10 2022, 18:31

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rAKA646dfd37f91c: Clean code
rAKAa1cc60006adc: Merge branch 'features/manual-improvement' into 'master'

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gallyamov committed rAKA188f96732338: Merge branch 'master' into features/fe2-orthodamage (authored by gallyamov).Feb 10 2022, 18:31

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

Commit	Author	Details	Committed
a1cc60006adc	richart	Merge branch 'features/manual-improvement' into 'master'	Jun 15 2021
af0069881275	anciaux	coorect the orthotropic law	Jun 15 2021
b7a7173c92a0	anciaux	adding material example in the doc for cohesive fatigue law	Jun 15 2021
1109adb1936b	anciaux	rearrange the documentation of materials	Jun 15 2021
ba6cced3bc34	anciaux	fix double inclusion of some files in the documentation	Jun 15 2021
06e98acbdeed	anciaux	removed the material parameter section	Jun 15 2021
0c14c227cafb	anciaux	fix broken link in the documentation	Jun 15 2021
10a0b1184224	anciaux	removes a warning during documentation compilation	Jun 15 2021
74430aec0412	anciaux	indentation	Jun 15 2021
1c47c504ad49	anciaux	remove useless coefficient	Jun 15 2021
6754a206cb80	richart	Merge branch 'features/21-get-current-nodes-position-in-solid-mechanics-model…	Jun 8 2021
2f2e169a8dd8	tdroch	wrap getCurrentPosition	Jun 4 2021
4e5261b08725	anciaux	Merge branch 'features/17-create-an-element-group-using-a-node-group-with…	Jun 2 2021
751f72b27010	gallyamov	Merge branch 'bugfixes/cohesive_element_with_pbc' into 'master'	May 28 2021
5d6969fe38af	richart/gallyamov	Bug fix in cohesive element inseration while PBC are active	May 28 2021
f17918f128f5	richart	Extending the documentation	May 28 2021
dfaf86194a6a	richart	missing empty function	May 27 2021
e53983915882	richart	Extending the groups interfaces	May 26 2021
63db325b3a31	richart	Merge branch 'features/phasefield' into 'master'	May 19 2021
48566fff3ed0	richart	Merge branch 'master' into features/phasefield	May 14 2021
fdaa2dacbd0c	richart	Correcting documentation	May 14 2021
da8a139c0051	richart	removing dead cmake code	May 14 2021
583b06990849	richart	Linting the code and applying clang-tidy corrections	May 14 2021
ed63cd404c2f	richart	Removing useless parameter that comes from a copy/paste...	May 14 2021
a1f8c50c9afc	richart	Reordering methods	May 14 2021
5c0a955c98b9	richart	Correcting compilation errors on newer version of pybind11	May 14 2021
0f2be8165fcb	pundir	Documentation for phasefield added changes in index	May 9 2021
1a3b184cdd43	pundir	Documentation for phasefield added	May 9 2021
6c828a4ab000	richart	Merge branch 'features/versioneer' into 'master'	May 7 2021
f66bea2afab4	richart	Modified the import of py11_akantu	May 7 2021
2214b92238c9	richart	Relocated py11_akantu module as a submodule of akantu	May 7 2021
ccc0cad429ca	richart	adding versioneer to generate a version number in the python interface	May 7 2021
ca7a0f4b9298	richart	Merge branch 'features/doc_energies' into 'master'	Apr 29 2021
b6cbe61d90b8	pundir	cleaning tests for check warnings	Apr 28 2021
a3a0c621fd12	pundir	fixed override functions	Apr 28 2021
3c109d4497eb	frerot	[doc] added dissipated energy doc for relevant materials	Apr 23 2021
4e7cea78bab9	pundir	increased mesh size for phasefield example to finish as a test	Apr 7 2021
2f318e8d0e9b	pundir	removed the memory part from the phasefield model	Apr 2 2021
5acfa6ca970d	pundir	Merge branch 'master' into features/phasefield	Apr 2 2021
be0ea515f119	pundir	added eta parameter to avoid full degradation of elastic energy	Apr 2 2021
1ce2f1aeb5ef	pundir	cleaning the code and adding descriptions to the classes	Apr 2 2021
5905a7ea8175	richart	Merge branch 'features/python_fragment_manager'	Mar 30 2021
22eb3a214a25	anciaux	remove matplotlib things	Mar 30 2021
7f9fe3088b81	anciaux	add the possibility to return a vector of possible material allocators	Mar 30 2021
245660087964	anciaux	CMake generates the mesh	Mar 30 2021
f18bcf4c8e30	anciaux	CMake generates the mesh	Mar 30 2021
5dbea3e35321	frerot	[doc] added energy explaination for plastic materials	Mar 29 2021
e0ac8fcc77c8	frerot	[doc] added documentation on getEnergy	Mar 29 2021
35cd9f678615	anciaux	correct code style	Mar 29 2021
2c2ac9d01138	anciaux	give better default to the fragmentation_manager tools	Mar 29 2021

Changes (413)
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M		.clang-tidy
M		.codeclimate.yml
M		.editorconfig
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M		.gitlab-ci.yml
D		.gitmodules
M		CMakeLists.txt
M		cmake/AkantuCleaning.cmake
M		cmake/AkantuConfig.cmake.in
M		cmake/AkantuExtraCompilationProfiles.cmake
M		cmake/AkantuInstall.cmake
M		cmake/AkantuUse.cmake
M		cmake/Modules/CMakePackagesSystem.cmake
M		cmake/Modules/CMakePackagesSystemPrivateFunctions.cmake
M		cmake/Modules/FindMumps.cmake
M		cmake/akantu_environement.sh.in
M		doc/CMakeLists.txt
M		doc/dev-doc/CMakeLists.txt
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A		doc/dev-doc/_static/logo_akantu.svg
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A		doc/dev-doc/changelog.rst
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M		doc/dev-doc/index.rst
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A		doc/dev-doc/manual/appendix/elements.rst
A		doc/dev-doc/manual/bibliography.rst
A		doc/dev-doc/manual/constitutive-laws.rst
M		doc/dev-doc/manual/fe_engine.rst
A		doc/dev-doc/manual/figures/bc_and_ic_example.svg
A		doc/dev-doc/manual/figures/beam_example.svg
A	(dir)	doc/dev-doc/manual/figures/cl/
A		doc/dev-doc/manual/figures/cl/cohesive_exponential.png
A		doc/dev-doc/manual/figures/cl/hooke_law.svg
A		doc/dev-doc/manual/figures/cl/isotropic_hardening_plasticity.svg
A		doc/dev-doc/manual/figures/cl/linear_cohesive_law.svg
A		doc/dev-doc/manual/figures/cl/stress_strain_el.svg
A		doc/dev-doc/manual/figures/cl/stress_strain_hook.tex
A		doc/dev-doc/manual/figures/cl/stress_strain_neo.svg
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A		doc/dev-doc/manual/figures/cl/visco_elastic_law.svg
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A		doc/dev-doc/manual/figures/implicit_dynamic.svg
A		doc/dev-doc/manual/figures/insertion.svg
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A		doc/dev-doc/manual/figures/static.svg
A		doc/dev-doc/manual/figures/static_analysis.png
A		doc/dev-doc/manual/figures/tangent.svg
M		doc/dev-doc/manual/getting_started.rst
A		doc/dev-doc/manual/heattransfermodel.rst
A		doc/dev-doc/manual/io.rst
A		doc/dev-doc/manual/manual-bibliography.bib
A		doc/dev-doc/manual/new-constitutive-laws.rst
A		doc/dev-doc/manual/phasefieldmodel.rst
A		doc/dev-doc/manual/solidmechanicsmodel.rst
A		doc/dev-doc/manual/structuralmechanicsmodel.rst
M		doc/dev-doc/reference.rst
M		doc/manual/manual-appendix-elements.tex
M		examples/CMakeLists.txt
P		examples/cohesive_element/cohesive_extrinsic/CMakeLists.txt Copied to packages/model_couplers.cmake
A		examples/cohesive_element/cohesive_extrinsic/triangle.msh
M		examples/cohesive_element/cohesive_extrinsic_ig_tg/cohesive_extrinsic_ig_tg.cc
P		examples/cohesive_element/cohesive_intrinsic/CMakeLists.txt Copied to examples/phase_field/CMakeLists.txt
A		examples/cohesive_element/cohesive_intrinsic/triangle.msh
M		examples/explicit/explicit_dynamic.cc
A	(dir)	examples/phase_field/
P		examples/phase_field/CMakeLists.txt Copied from examples/cohesive_element/cohesive_intrinsic/CMakeLists.txt
A		examples/phase_field/material_notch.dat
A		examples/phase_field/phase_field_notch.cc
A		examples/phase_field/square_notch.geo
M		examples/python/CMakeLists.txt
M		examples/python/cohesive/plate.py
M		examples/python/custom-material/bi-material.py
M		examples/python/eigen_modes/eigen_modes.py
A	(dir)	examples/python/fragmentation/
A		examples/python/fragmentation/CMakeLists.txt
A		examples/python/fragmentation/fragmentation.py
A		examples/python/fragmentation/fragmentation_mesh.geo
A		examples/python/fragmentation/material.dat
A	(dir)	examples/python/phase-field/
A		examples/python/phase-field/phasefield-dynamic.py
A		examples/python/phase-field/phasefield-static.py
A	(dir)	examples/python/structural_mechanics/
A		examples/python/structural_mechanics/CMakeLists.txt
A		examples/python/structural_mechanics/structural_mechanics.py
A		examples/python/structural_mechanics/structural_mechanics_dynamics.py
A		examples/python/structural_mechanics/structural_mechanics_softening.py
M		examples/structural_mechanics/CMakeLists.txt
V		examples/structural_mechanics/{bernoulli_beam_2_example.cc ← bernoulli_beam_2_exemple.cc}
V		examples/structural_mechanics/{bernoulli_beam_2_exemple.cc → bernoulli_beam_2_example.cc}
M		extra_packages/asr-tools/src/material_FE2/material_FE2.cc
M		extra_packages/asr-tools/src/solid_mechanics_model_RVE.cc
M		extra_packages/asr-tools/src/solid_mechanics_model_RVE.hh
M		extra_packages/igfem/src/integrator_gauss_igfem.hh
M		extra_packages/igfem/src/integrator_gauss_igfem_inline_impl.hh
M		extra_packages/igfem/src/non_local_manager_igfem.cc
M		extra_packages/igfem/src/non_local_manager_igfem.hh
M		extra_packages/igfem/src/shape_igfem.cc
M		extra_packages/igfem/src/shape_igfem.hh
M		extra_packages/igfem/src/solid_mechanics_model_igfem.cc
M		extra_packages/igfem/src/solid_mechanics_model_igfem.hh
D		extra_packages/students-extra-package
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_coulomb.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_coulomb_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_cohesive.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_cohesive_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_no_healing.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_no_healing_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_no_regularisation.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_no_regularisation.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_rubin_ampuero.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_rubin_ampuero.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_simplified_prakash_clifton.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_simplified_prakash_clifton.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/mIIasym_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/mIIasym_contact.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_contact.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_friction.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_friction_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_contact.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_friction.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_friction_tmpl.hh
M		packages/core.cmake
M		packages/documentation_developer_manual.cmake
M		packages/documentation_user_manual.cmake
P		packages/fluid_diffusion.cmake Copied to packages/phase_field.cmake
P		packages/model_couplers.cmake Copied from examples/cohesive_element/cohesive_extrinsic/CMakeLists.txt
P		packages/phase_field.cmake Copied from packages/fluid_diffusion.cmake
M		packages/solid_mechanics.cmake
M		python/CMakeLists.txt
M		python/akantu/__init__.py
A		python/akantu/_version.py
M		python/py_aka_common.cc
M		python/py_akantu.cc
A		python/py_fragment_manager.cc
A		python/py_fragment_manager.hh
M		python/py_group_manager.cc
M		python/py_heat_transfer_model.cc
M		python/py_material.cc
M		python/py_mesh.cc
M		python/py_model.cc
M		python/py_parser.cc
A		python/py_phase_field_model.cc
A		python/py_phase_field_model.hh
M		python/py_solid_mechanics_model.cc
M		python/py_solid_mechanics_model_cohesive.cc
M		python/py_solver.cc
M		python/py_solver.hh
A		python/py_structural_mechanics_model.cc
A		python/py_structural_mechanics_model.hh
M		src/CMakeLists.txt
M		src/common/aka_array.hh
M		src/common/aka_array_tmpl.hh
M		src/common/aka_common.cc
M		src/common/aka_common.hh
M		src/common/aka_common_inline_impl.hh
M		src/common/aka_config.hh.in
M		src/common/aka_error.hh
M		src/common/aka_event_handler_manager.hh
M		src/common/aka_factory.hh
M		src/common/aka_grid_dynamic.hh
M		src/common/aka_math.hh
D		src/common/aka_memory.cc
V		src/{common/aka_memory.hh → model/solid_mechanics/materials/material_damage/material_phasefield.hh}
D		src/common/aka_memory_inline_impl.hh
D		src/common/aka_static_memory.cc
D		src/common/aka_static_memory.hh
D		src/common/aka_static_memory_inline_impl.hh
D		src/common/aka_static_memory_tmpl.hh
M		src/fe_engine/element_class_structural.hh
M		src/fe_engine/element_classes/element_class_bernoulli_beam_inline_impl.hh
M		src/fe_engine/element_classes/element_class_hermite_inline_impl.hh
M		src/fe_engine/fe_engine.cc
M		src/fe_engine/fe_engine.hh
M		src/fe_engine/fe_engine_template.hh
M		src/fe_engine/fe_engine_template_tmpl.hh
M		src/fe_engine/fe_engine_template_tmpl_field.hh
M		src/fe_engine/integrator.hh
M		src/fe_engine/integrator_gauss.hh
M		src/fe_engine/integrator_gauss_inline_impl.hh
M		src/fe_engine/shape_cohesive.hh
M		src/fe_engine/shape_cohesive_inline_impl.hh
M		src/fe_engine/shape_functions.cc
M		src/fe_engine/shape_functions.hh
M		src/fe_engine/shape_lagrange.hh
M		src/fe_engine/shape_lagrange_base.cc
M		src/fe_engine/shape_lagrange_base.hh
M		src/fe_engine/shape_lagrange_inline_impl.hh
P		src/fe_engine/shape_structural.cc Copied to src/model/phase_field/phasefield_selector_tmpl.hh
M		src/fe_engine/shape_structural.hh
M		src/fe_engine/shape_structural_inline_impl.hh
M		src/io/dumper/dumper_material_padders.hh
M		src/io/parser/parser.hh
M		src/mesh/element_group.cc
M		src/mesh/element_group.hh
M		src/mesh/element_group_inline_impl.hh
M		src/mesh/element_type_map.hh
M		src/mesh/element_type_map_tmpl.hh
M		src/mesh/group_manager.cc
M		src/mesh/group_manager.hh
M		src/mesh/mesh.cc
M		src/mesh/mesh.hh
M		src/mesh/mesh_accessor.hh
M		src/mesh/mesh_data.cc
M		src/mesh/mesh_data.hh
M		src/mesh/mesh_data_tmpl.hh
M		src/mesh/mesh_inline_impl.hh
M		src/mesh/mesh_iterators.hh
M		src/mesh/mesh_periodic.cc
M		src/mesh/node_group.cc
M		src/mesh/node_group.hh
M		src/mesh/node_group_inline_impl.hh
M		src/mesh_utils/mesh_partition.cc
M		src/mesh_utils/mesh_partition.hh
M		src/mesh_utils/mesh_partition/mesh_partition_mesh_data.cc
M		src/mesh_utils/mesh_partition/mesh_partition_mesh_data.hh
M		src/mesh_utils/mesh_partition/mesh_partition_scotch.cc
M		src/mesh_utils/mesh_partition/mesh_partition_scotch.hh
M		src/mesh_utils/mesh_utils.cc
M		src/model/common/dof_manager/dof_manager.cc
M		src/model/common/dof_manager/dof_manager.hh
M		src/model/common/dof_manager/dof_manager_default.cc
M		src/model/common/dof_manager/dof_manager_default.hh
M		src/model/common/dof_manager/dof_manager_petsc.cc
M		src/model/common/dof_manager/dof_manager_petsc.hh
M		src/model/common/integration_scheme/integration_scheme.cc
M		src/model/common/integration_scheme/integration_scheme.hh
M		src/model/common/model_solver.cc
M		src/model/common/model_solver.hh
M		src/model/common/non_linear_solver/non_linear_solver.cc
M		src/model/common/non_linear_solver/non_linear_solver.hh
M		src/model/common/non_linear_solver/non_linear_solver_linear.cc
M		src/model/common/non_linear_solver/non_linear_solver_linear.hh
M		src/model/common/non_linear_solver/non_linear_solver_lumped.cc
M		src/model/common/non_linear_solver/non_linear_solver_lumped.hh
M		src/model/common/non_linear_solver/non_linear_solver_newton_raphson.cc
M		src/model/common/non_linear_solver/non_linear_solver_newton_raphson.hh
M		src/model/common/non_linear_solver/non_linear_solver_petsc.cc
M		src/model/common/non_linear_solver/non_linear_solver_petsc.hh
M		src/model/common/non_local_toolbox/neighborhood_base.cc
M		src/model/common/non_local_toolbox/neighborhood_base.hh
M		src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion.cc
M		src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion.hh
M		src/model/common/non_local_toolbox/non_local_manager.cc
M		src/model/common/non_local_toolbox/non_local_manager.hh
M		src/model/common/non_local_toolbox/non_local_neighborhood.hh
M		src/model/common/non_local_toolbox/non_local_neighborhood_base.cc
M		src/model/common/non_local_toolbox/non_local_neighborhood_base.hh
M		src/model/common/non_local_toolbox/non_local_neighborhood_tmpl.hh
M		src/model/common/time_step_solvers/time_step_solver.cc
M		src/model/common/time_step_solvers/time_step_solver.hh
M		src/model/common/time_step_solvers/time_step_solver_default.cc
M		src/model/common/time_step_solvers/time_step_solver_default.hh
M		src/model/fluid_diffusion/fluid_diffusion_model.cc
M		src/model/fluid_diffusion/fluid_diffusion_model.hh
M		src/model/heat_transfer/heat_transfer_model.cc
M		src/model/heat_transfer/heat_transfer_model.hh
M		src/model/model.cc
M		src/model/model.hh
A	(dir)	src/model/model_couplers/
A		src/model/model_couplers/coupler_solid_phasefield.cc
A		src/model/model_couplers/coupler_solid_phasefield.hh
M		src/model/model_inline_impl.hh
M		src/model/model_options.hh
A	(dir)	src/model/phase_field/
A		src/model/phase_field/phase_field_model.cc
A		src/model/phase_field/phase_field_model.hh
A		src/model/phase_field/phase_field_model_inline_impl.cc
A		src/model/phase_field/phasefield.cc
A		src/model/phase_field/phasefield.hh
A		src/model/phase_field/phasefield_inline_impl.cc
A		src/model/phase_field/phasefield_selector.hh
P		src/model/phase_field/phasefield_selector_tmpl.hh Copied from src/fe_engine/shape_structural.cc
A	(dir)	src/model/phase_field/phasefields/
A		src/model/phase_field/phasefields/phasefield_exponential.cc
A		src/model/phase_field/phasefields/phasefield_exponential.hh
M		src/model/solid_mechanics/material.cc
M		src/model/solid_mechanics/material.hh
M		src/model/solid_mechanics/materials/internal_field.hh
M		src/model/solid_mechanics/materials/internal_field_tmpl.hh
M		src/model/solid_mechanics/materials/material_core_includes.hh
M		src/model/solid_mechanics/materials/material_damage/material_damage_tmpl.hh
A		src/model/solid_mechanics/materials/material_damage/material_phasefield.cc
V		src/{model/solid_mechanics/materials/material_damage/material_phasefield.hh ← common/aka_memory.hh}
A		src/model/solid_mechanics/materials/material_damage/material_phasefield_inline_impl.cc
M		src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.cc
M		src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.hh
M		src/model/solid_mechanics/materials/material_plastic/material_plastic.hh
M		src/model/solid_mechanics/solid_mechanics_model.cc
M		src/model/solid_mechanics/solid_mechanics_model.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.hh
M		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.cc
M		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.hh
M		src/model/solid_mechanics/solid_mechanics_model_io.cc
M		src/model/solid_mechanics/solid_mechanics_model_material.cc
M		src/model/structural_mechanics/structural_elements/structural_element_bernoulli_beam_2.hh
M		src/model/structural_mechanics/structural_elements/structural_element_bernoulli_beam_3.hh
M		src/model/structural_mechanics/structural_elements/structural_element_kirchhoff_shell.hh
M		src/model/structural_mechanics/structural_mechanics_model.cc
M		src/model/structural_mechanics/structural_mechanics_model.hh
M		src/model/structural_mechanics/structural_mechanics_model_inline_impl.hh
M		src/model/structural_mechanics/structural_mechanics_model_mass.cc
M		src/solver/solver_petsc.cc
M		src/solver/solver_petsc.hh
M		src/solver/sparse_solver.cc
M		src/solver/sparse_solver.hh
M		src/solver/sparse_solver_mumps.cc
M		src/solver/sparse_solver_mumps.hh
M		src/synchronizer/communicator_dummy_inline_impl.hh
M		src/synchronizer/communicator_inline_impl.hh
M		src/synchronizer/dof_synchronizer.cc
M		src/synchronizer/dof_synchronizer.hh
M		src/synchronizer/element_synchronizer.cc
M		src/synchronizer/element_synchronizer.hh
M		src/synchronizer/facet_synchronizer.cc
M		src/synchronizer/facet_synchronizer.hh
M		src/synchronizer/grid_synchronizer.cc
M		src/synchronizer/grid_synchronizer.hh
M		src/synchronizer/grid_synchronizer_tmpl.hh
M		src/synchronizer/node_synchronizer.cc
M		src/synchronizer/node_synchronizer.hh
M		src/synchronizer/periodic_node_synchronizer.cc
M		src/synchronizer/periodic_node_synchronizer.hh
M		src/synchronizer/synchronizer.cc
M		src/synchronizer/synchronizer.hh
M		src/synchronizer/synchronizer_impl.hh
M		src/synchronizer/synchronizer_impl_tmpl.hh
M		test/CMakeLists.txt
A	(dir)	test/ci/codeclimate/
A	(dir)	test/ci/codeclimate/codeclimate-clang-tidy/
A		test/ci/codeclimate/codeclimate-clang-tidy/Dockerfile
A	(dir)	test/ci/codeclimate/codeclimate-clang-tidy/bin/
A		test/ci/codeclimate/codeclimate-clang-tidy/bin/codeclimate-clang-tidy
A		test/ci/codeclimate/codeclimate-clang-tidy/bin/run-clang-tidy
A		test/ci/codeclimate/codeclimate-clang-tidy/engine.json
A	(dir)	test/ci/codeclimate/codeclimate-clang-tidy/lib/
A		test/ci/codeclimate/codeclimate-clang-tidy/lib/command.py
A		test/ci/codeclimate/codeclimate-clang-tidy/lib/issue_formatter.py
A		test/ci/codeclimate/codeclimate-clang-tidy/lib/runner.py
A		test/ci/codeclimate/codeclimate-clang-tidy/lib/workspace.py
M		test/ci/debian:testing/Dockerfile
A	(dir)	test/ci/includes_for_ci/
A		test/ci/includes_for_ci/aka_config.hh
A		test/ci/includes_for_ci/aka_element_classes_info.hh
A		test/ci/includes_for_ci/aka_fortran_mangling.hh
A		test/ci/includes_for_ci/material_list.hh
A	(dir)	test/ci/manylinux/
A		test/ci/manylinux/Dockerfile
A		test/ci/manylinux/compilers.yaml
A		test/ci/scripts/clang-tidy2code-quality.py
M		test/test_model/CMakeLists.txt
M		test/test_model/test_common/test_dof_manager.cc
M		test/test_model/test_common/test_model_solver/test_model_solver_my_model.hh
M		test/test_model/test_common/test_non_local_toolbox/my_model.hh
A	(dir)	test/test_model/test_phase_field_model/
V		test/{test_model/test_phase_field_model ← test_static_memory}/CMakeLists.txt
A		test/test_model/test_phase_field_model/material_coupling.dat
A		test/test_model/test_phase_field_model/material_multiple.dat
A		test/test_model/test_phase_field_model/phasefield_selector.dat
A		test/test_model/test_phase_field_model/phasefield_selector.msh
A		test/test_model/test_phase_field_model/test_multi_material.cc
A		test/test_model/test_phase_field_model/test_one_element.geo
A		test/test_model/test_phase_field_model/test_one_element.msh
A		test/test_model/test_phase_field_model/test_phase_solid_coupling.cc
A		test/test_model/test_phase_field_model/test_phase_solid_explicit.cc
A		test/test_model/test_phase_field_model/test_phasefield_selector.cc
A		test/test_model/test_phase_field_model/test_two_element.geo
A		test/test_model/test_phase_field_model/test_two_element.msh
M		test/test_model/test_solid_mechanics_model/cube_two_materials.geo
M		test/test_model/test_solid_mechanics_model/test_materials/test_plastic_materials.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_reassign_material.cc
M		test/test_model/test_structural_mechanics_model/CMakeLists.txt
M		test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_bernoulli_beam_2.cc
M		test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_bernoulli_beam_3.cc
M		test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_bernoulli_beam_dynamics.cc
M		test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_discrete_kirchhoff_triangle_18.cc
M		test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_fixture.hh
M		test/test_python_interface/CMakeLists.txt
D		test/test_static_memory
V		test/{test_static_memory → test_model/test_phase_field_model}/CMakeLists.txt
D		test/test_static_memory/test_static_memory.cc
M		test/test_synchronizer/test_facet_synchronizer.cc
M		test/test_synchronizer/test_synchronizer_communication.cc
M		third-party/akantu_iterators/include/aka_iterators.hh
M		third-party/akantu_iterators/include/aka_tuple_tools.hh
A		third-party/akantu_iterators/include/iterators/aka_concatenate_iterator.hh
A		third-party/akantu_iterators/include/iterators/aka_iterator_tools.hh
M		third-party/akantu_iterators/include/iterators/aka_zip_iterator.hh
M		third-party/akantu_iterators/test/CMakeLists.txt
M		third-party/akantu_iterators/test/test_iterators.cc
M		third-party/iohelper/CMakeLists.txt
M		third-party/iohelper/src/CMakeLists.txt